Rmu_ssc0000050.1_g000100

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000050.1
N/A
Physical Location & Seq
Forward (+)
465928 .. 468168
2241 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 459 bp
atgatctcctacttcactcttgcattctgtttattcttgtttttgtctccctatgttcatagcgagaggtatccctttccttatggccagcagcttgattacaatttctacgacagaacctgcccccacttgccgaggattgttaagtacaatgtctgggccgctctcaagaatgacaccaggatggctgcatctcttcttcggatgcattttcacgactgtattgttgatggatgtgaaggctcagtgcttcttgatgacacacaagacttcaggggcgagaagaatgctccaccaaatcgcaattcacttcgaggggtttcatttgctggcggcggcgatctcatggtccctggaccaagcagcgacagcgagggcacggggaggcggcgcagtcttgttcgttcatcggcgccgttgttccagatcgattgctctacagaaaagttgaggcgataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

152

Amino Acids

17.26

Weight (kDa)

8.31

Isoelectric Point (pI)

54.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 48 - 108 2.6e-16 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 128
AccB1I GGYRCC 1 cut(s) 412
AccBSI CCGCTC 1 cut(s) 164
AciI CCGC 4 cut(s) 162, 333, 336, 388
AcoI YGGCCR 1 cut(s) 85
AcuI CTGAAG 1 cut(s) 256
AcyI GRCGYC 1 cut(s) 413
AfaI GTAC 1 cut(s) 149
AjnI CCWGG 2 cut(s) 179, 352
AjuI GAANNNNNNNTTGG 2 cut(s) 289, 321
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
Alw26I GTCTC 1 cut(s) 51
AlwNI CAGNNNCTG 1 cut(s) 120
AoxI GGCC 2 cut(s) 85, 159
ApeKI GCWGC 3 cut(s) 91, 188, 363
AspLEI GCGC 2 cut(s) 393, 415
AspS9I GGNCC 3 cut(s) 159, 349, 356
AvaII GGWCC 2 cut(s) 349, 356
BaeGI GKGCMC 1 cut(s) 380
BalI TGGCCA 1 cut(s) 87
BanI GGYRCC 1 cut(s) 412
BbvI GCAGC 3 cut(s) 103, 175, 375
BccI CCATC 2 cut(s) 178, 224
BceAI ACGGC 1 cut(s) 400
BcgI CGANNNNNNTGC 2 cut(s) 269, 303
BciT130I CCWGG 2 cut(s) 181, 354
BciVI GTATCC 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 51
BfmI CTRYAG 1 cut(s) 438
BfoI RGCGCY 1 cut(s) 416
BfuAI ACCTGC 1 cut(s) 128
BfuI GTATCC 1 cut(s) 81
BisI GCNGC 7 cut(s) 92, 162, 189, 334, 337, 364, 389
BlsI GCNGC 7 cut(s) 93, 163, 190, 335, 338, 365, 390
Bme1390I CCNGG 2 cut(s) 181, 354
Bme18I GGWCC 2 cut(s) 349, 356
BmgT120I GGNCC 3 cut(s) 159, 349, 356
BmiI GGNNCC 2 cut(s) 351, 414
BmrFI CCNGG 2 cut(s) 181, 354
BmsI GCATC 2 cut(s) 195, 200
BpuEI CTTGAG 1 cut(s) 152
Bsa29I ATCGAT 1 cut(s) 429
BsaHI GRCGYC 1 cut(s) 413
BsaJI CCNNGG 2 cut(s) 134, 352
BseBI CCWGG 2 cut(s) 181, 354
BseCI ATCGAT 1 cut(s) 429
BseDI CCNNGG 2 cut(s) 134, 352
BseGI GGATG 3 cut(s) 189, 210, 239
BseMII CTCAG 1 cut(s) 258
BseSI GKGCMC 1 cut(s) 380
BseXI GCAGC 3 cut(s) 103, 175, 375
BshFI GGCC 2 cut(s) 87, 161
BshNI GGYRCC 1 cut(s) 412
BshVI ATCGAT 1 cut(s) 429
BslFI GGGAC 1 cut(s) 335
BsmAI GTCTC 1 cut(s) 51
BsmFI GGGAC 1 cut(s) 335
BsmI GAATGC 2 cut(s) 23, 292
BsnI GGCC 2 cut(s) 87, 161
Bsp1286I GDGCHC 1 cut(s) 380
Bsp143I GATC 3 cut(s) 3, 340, 426
BspACI CCGC 4 cut(s) 162, 333, 336, 388
BspANI GGCC 2 cut(s) 87, 161
BspCNI CTCAG 1 cut(s) 257
BspDI ATCGAT 1 cut(s) 429
BspLI GGNNCC 2 cut(s) 351, 414
BspMI ACCTGC 1 cut(s) 128
BspT107I GGYRCC 1 cut(s) 412
BsrBI CCGCTC 1 cut(s) 164
BssECI CCNNGG 2 cut(s) 134, 352
BssMI GATC 3 cut(s) 3, 340, 426
BssNI GRCGYC 1 cut(s) 413
Bst2UI CCWGG 2 cut(s) 181, 354
Bst4CI ACNGT 1 cut(s) 221
Bst6I CTCTTC 1 cut(s) 201
BstACI GRCGYC 1 cut(s) 413
BstC8I GCNNGC 2 cut(s) 89, 331
BstDEI CTNAG 1 cut(s) 244
BstF5I GGATG 3 cut(s) 189, 210, 239
BstH2I RGCGCY 1 cut(s) 416
BstHHI GCGC 2 cut(s) 393, 415
BstKTI GATC 3 cut(s) 6, 343, 429
BstMAI GTCTC 1 cut(s) 51
BstMBI GATC 3 cut(s) 3, 340, 426
BstMWI GCNNNNNNNGC 1 cut(s) 369
BstNI CCWGG 2 cut(s) 181, 354
BstSCI CCNGG 2 cut(s) 179, 352
BstSFI CTRYAG 1 cut(s) 438
BstSLI GKGCMC 1 cut(s) 380
BstV1I GCAGC 3 cut(s) 103, 175, 375
Bsu15I ATCGAT 1 cut(s) 429
BsuI GTATCC 1 cut(s) 81
BsuRI GGCC 2 cut(s) 87, 161
BsuTUI ATCGAT 1 cut(s) 429
BtsCI GGATG 3 cut(s) 189, 210, 239
BtsIMutI CAGTG 1 cut(s) 252
BveI ACCTGC 1 cut(s) 128
Cac8I GCNNGC 2 cut(s) 89, 331
CaiI CAGNNNCTG 1 cut(s) 120
CfoI GCGC 2 cut(s) 393, 415
Cfr13I GGNCC 3 cut(s) 159, 349, 356
ClaI ATCGAT 1 cut(s) 429
Csp6I GTAC 1 cut(s) 148
CviAII CATG 1 cut(s) 346
CviJI RGCY 5 cut(s) 87, 94, 161, 188, 243
CviKI_1 RGCY 5 cut(s) 87, 94, 161, 188, 243
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 1 cut(s) 244
DinI GGCGCC 1 cut(s) 414
DpnI GATC 3 cut(s) 5, 342, 428
DpnII GATC 3 cut(s) 3, 340, 426
EaeI YGGCCR 1 cut(s) 85
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Eco47I GGWCC 2 cut(s) 349, 356
Eco57I CTGAAG 1 cut(s) 256
EcoRII CCWGG 2 cut(s) 179, 352
EcoT22I ATGCAT 1 cut(s) 210
EgeI GGCGCC 1 cut(s) 414
EheI GGCGCC 1 cut(s) 414
FaeI CATG 1 cut(s) 349
FaiI YATR 4 cut(s) 54, 60, 84, 347
FaqI GGGAC 1 cut(s) 335
FatI CATG 1 cut(s) 345
Fnu4HI GCNGC 7 cut(s) 92, 162, 189, 334, 337, 364, 389
FokI GGATG 3 cut(s) 196, 217, 246
Fsp4HI GCNGC 7 cut(s) 92, 162, 189, 334, 337, 364, 389
GlaI GCGC 2 cut(s) 392, 414
GluI GCNGC 7 cut(s) 92, 162, 189, 334, 337, 364, 389
HaeII RGCGCY 1 cut(s) 416
HaeIII GGCC 2 cut(s) 87, 161
HhaI GCGC 2 cut(s) 393, 415
Hin1I GRCGYC 1 cut(s) 413
Hin1II CATG 1 cut(s) 349
Hin6I GCGC 2 cut(s) 391, 413
HinP1I GCGC 2 cut(s) 391, 413
Hpy188I TCNGA 1 cut(s) 204
Hpy188III TCNNGA 4 cut(s) 169, 215, 254, 424
HpyAV CCTTC 1 cut(s) 233
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4V TGCA 3 cut(s) 23, 191, 208
HpyF10VI GCNNNNNNNGC 1 cut(s) 369
HpyF3I CTNAG 1 cut(s) 244
Hsp92I GRCGYC 1 cut(s) 413
Hsp92II CATG 1 cut(s) 349
HspAI GCGC 2 cut(s) 391, 413
KasI GGCGCC 1 cut(s) 412
Kzo9I GATC 3 cut(s) 3, 340, 426
LmnI GCTCC 1 cut(s) 295
Lsp1109I GCAGC 3 cut(s) 103, 175, 375
LweI GCATC 2 cut(s) 195, 200
MalI GATC 3 cut(s) 5, 342, 428
MbiI CCGCTC 1 cut(s) 164
MboI GATC 3 cut(s) 3, 340, 426
MboII GAAGA 3 cut(s) 188, 191, 295
MhlI GDGCHC 1 cut(s) 380
MlsI TGGCCA 1 cut(s) 87
MluCI AATT 2 cut(s) 103, 304
MluNI TGGCCA 1 cut(s) 87
Mly113I GGCGCC 1 cut(s) 413
MnlI CCTC 6 cut(s) 60, 129, 308, 367, 378, 444
Mox20I TGGCCA 1 cut(s) 87
Mph1103I ATGCAT 1 cut(s) 210
MscI TGGCCA 1 cut(s) 87
MseI TTAA 1 cut(s) 144
MslI CAYNNNNRTG 1 cut(s) 182
Msp20I TGGCCA 1 cut(s) 87
MspR9I CCNGG 2 cut(s) 181, 354
Mva1269I GAATGC 2 cut(s) 23, 292
MvaI CCWGG 2 cut(s) 181, 354
MwoI GCNNNNNNNGC 1 cut(s) 369
NarI GGCGCC 1 cut(s) 413
NdeII GATC 3 cut(s) 3, 340, 426
NlaIII CATG 1 cut(s) 349
NlaIV GGNNCC 2 cut(s) 351, 414
NmeAIII GCCGAG 1 cut(s) 159
NsiI ATGCAT 1 cut(s) 210
PctI GAATGC 2 cut(s) 23, 292
PkrI GCNGC 7 cut(s) 93, 163, 190, 335, 338, 365, 390
PluTI GGCGCC 1 cut(s) 416
Psp6I CCWGG 2 cut(s) 179, 352
PspGI CCWGG 2 cut(s) 179, 352
PspN4I GGNNCC 2 cut(s) 351, 414
PspPI GGNCC 3 cut(s) 159, 349, 356
PstNI CAGNNNCTG 1 cut(s) 120
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
RseI CAYNNNNRTG 1 cut(s) 182
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 7 cut(s) 92, 162, 189, 334, 337, 364, 389
Sau3AI GATC 3 cut(s) 3, 340, 426
Sau96I GGNCC 3 cut(s) 159, 349, 356
ScrFI CCNGG 2 cut(s) 181, 354
SduI GDGCHC 1 cut(s) 380
SetI ASST 3 cut(s) 71, 96, 122
SfaNI GCATC 2 cut(s) 195, 200
SfcI CTRYAG 1 cut(s) 438
SfoI GGCGCC 1 cut(s) 414
SinI GGWCC 2 cut(s) 349, 356
SmiMI CAYNNNNRTG 1 cut(s) 182
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 2 cut(s) 103, 304
SsiI CCGC 4 cut(s) 162, 333, 336, 388
SspDI GGCGCC 1 cut(s) 412
StyD4I CCNGG 2 cut(s) 179, 352
TaaI ACNGT 1 cut(s) 221
TaqI TCGA 2 cut(s) 313, 429
TasI AATT 2 cut(s) 103, 304
TatI WGTACW 1 cut(s) 147
TauI GCSGC 4 cut(s) 164, 336, 339, 391
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TscAI CASTG 1 cut(s) 252
TseI GCWGC 3 cut(s) 91, 188, 363
TspDTI ATGAA 3 cut(s) 47, 312, 396
TspRI CASTG 1 cut(s) 252
VpaK11BI GGWCC 2 cut(s) 349, 356
Zsp2I ATGCAT 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.