Rmu_ssc0000062.1_g000034

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000062.1
N/A
Physical Location & Seq
Forward (+)
196019 .. 198475
2457 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 696 bp
atggggataatgggcgtagttgtcgtgccacggcttccatttgcgatccttgcgttccttgcatcggagtggataggggtattcatactatcatgtgttgcggtgtcatttgattgtttgttcctttacattccaatcatcgatcaggaaaacaagtgccttgacacggacaagacgttgaggaatgtagcacttatcctcagatcacttacagatatcgctttcatattccatatttatgctctgatcaatggttccatgggggagcgcctcacatgggttcaccacgtgtcagagtcattgttgccaagaaaactacagcttgcgtcatggtttccaagaaaactacagcttgtccgacctcagaagattgcagctatccacaccatagtcacctttctagctattcttccctacccacaggtggcaatattagttggctctttcagattgggaattataatcgtccttcttgtcttccaatatctcttaaggattttccaaatcctcaccatcgaacggcgccttcatctatcttttactttctccttcaccatgacaacctccgctggcattgatgatgtcacggcgagctttgcggcatcgctggctttggctggaggcgatgtcattgacgtctcacttatgggaaacgctgcagcaccgcgaaacccccaggattttctgcttgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

231

Amino Acids

25.64

Weight (kDa)

8.52

Isoelectric Point (pI)

39.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 461
AatII GACGTC 1 cut(s) 639
AccB1I GGYRCC 1 cut(s) 522
AccII CGCG 1 cut(s) 667
AciI CCGC 4 cut(s) 101, 567, 599, 665
AclWI GGATC 1 cut(s) 40
AcvI CACGTG 1 cut(s) 289
AcyI GRCGYC 2 cut(s) 523, 636
AdeI CACNNNGTG 1 cut(s) 289
AfiI CCNNNNNNNGG 5 cut(s) 64, 166, 277, 424, 519
AflII CTTAAG 1 cut(s) 490
AflIII ACRYGT 1 cut(s) 288
AjnI CCWGG 1 cut(s) 675
AluBI AGCT 5 cut(s) 322, 352, 377, 404, 594
AluI AGCT 5 cut(s) 322, 352, 377, 404, 594
Alw26I GTCTC 1 cut(s) 643
AlwI GGATC 1 cut(s) 40
ApeKI GCWGC 3 cut(s) 374, 656, 659
AspLEI GCGC 2 cut(s) 270, 525
AsuHPI GGTGA 4 cut(s) 275, 385, 502, 544
BanI GGYRCC 1 cut(s) 522
BbrPI CACGTG 1 cut(s) 289
BbsI GAAGAC 1 cut(s) 469
BbvI GCAGC 3 cut(s) 386, 643, 671
BccI CCATC 1 cut(s) 521
BceAI ACGGC 3 cut(s) 47, 536, 603
BciT130I CCWGG 1 cut(s) 677
BclI TGATCA 1 cut(s) 246
BcoDI GTCTC 1 cut(s) 643
BfaI CTAG 1 cut(s) 401
BfmI CTRYAG 3 cut(s) 317, 347, 657
BfoI RGCGCY 2 cut(s) 271, 526
BfrI CTTAAG 1 cut(s) 490
BisI GCNGC 4 cut(s) 375, 600, 657, 660
BlsI GCNGC 4 cut(s) 376, 601, 658, 661
Bme1390I CCNGG 1 cut(s) 677
BmiI GGNNCC 2 cut(s) 256, 524
BmrFI CCNGG 1 cut(s) 677
BmsI GCATC 2 cut(s) 71, 611
BpiI GAAGAC 1 cut(s) 469
BpmI CTGGAG 1 cut(s) 639
Bsa29I ATCGAT 1 cut(s) 141
BsaAI YACGTR 1 cut(s) 289
BsaHI GRCGYC 2 cut(s) 523, 636
BsaJI CCNNGG 3 cut(s) 29, 258, 675
BsaXI ACNNNNNCTCC 2 cut(s) 612, 642
Bsc4I CCNNNNNNNGG 5 cut(s) 64, 166, 277, 424, 519
BseBI CCWGG 1 cut(s) 677
BseCI ATCGAT 1 cut(s) 141
BseDI CCNNGG 3 cut(s) 29, 258, 675
BseLI CCNNNNNNNGG 5 cut(s) 64, 166, 277, 424, 519
BseMII CTCAG 2 cut(s) 214, 377
BseXI GCAGC 3 cut(s) 386, 643, 671
Bsh1236I CGCG 1 cut(s) 667
BshNI GGYRCC 1 cut(s) 522
BshVI ATCGAT 1 cut(s) 141
BslI CCNNNNNNNGG 5 cut(s) 64, 166, 277, 424, 519
BsmAI GTCTC 1 cut(s) 643
BsmBI CGTCTC 1 cut(s) 643
Bsp143I GATC 4 cut(s) 45, 142, 203, 246
Bsp19I CCATGG 1 cut(s) 258
BspACI CCGC 4 cut(s) 101, 567, 599, 665
BspCNI CTCAG 2 cut(s) 213, 376
BspDI ATCGAT 1 cut(s) 141
BspFNI CGCG 1 cut(s) 667
BspLI GGNNCC 2 cut(s) 256, 524
BspMAI CTGCAG 1 cut(s) 661
BspPI GGATC 1 cut(s) 40
BspT107I GGYRCC 1 cut(s) 522
BspTI CTTAAG 1 cut(s) 490
BssECI CCNNGG 3 cut(s) 29, 258, 675
BssMI GATC 4 cut(s) 45, 142, 203, 246
BssNI GRCGYC 2 cut(s) 523, 636
BssT1I CCWWGG 1 cut(s) 258
Bst2UI CCWGG 1 cut(s) 677
BstACI GRCGYC 2 cut(s) 523, 636
BstAFI CTTAAG 1 cut(s) 490
BstBAI YACGTR 1 cut(s) 289
BstC8I GCNNGC 5 cut(s) 324, 571, 592, 609, 690
BstDEI CTNAG 2 cut(s) 200, 363
BstDSI CCRYGG 2 cut(s) 29, 258
BstFNI CGCG 1 cut(s) 667
BstH2I RGCGCY 2 cut(s) 271, 526
BstHHI GCGC 2 cut(s) 270, 525
BstKTI GATC 4 cut(s) 48, 145, 206, 249
BstMAI GTCTC 1 cut(s) 643
BstMBI GATC 4 cut(s) 45, 142, 203, 246
BstMWI GCNNNNNNNGC 4 cut(s) 50, 59, 596, 608
BstNI CCWGG 1 cut(s) 677
BstSCI CCNGG 1 cut(s) 675
BstSFI CTRYAG 3 cut(s) 317, 347, 657
BstUI CGCG 1 cut(s) 667
BstV1I GCAGC 3 cut(s) 386, 643, 671
BstV2I GAAGAC 1 cut(s) 469
Bsu15I ATCGAT 1 cut(s) 141
BsuTUI ATCGAT 1 cut(s) 141
BtgI CCRYGG 2 cut(s) 29, 258
BtgZI GCGATG 2 cut(s) 588, 639
Cac8I GCNNGC 5 cut(s) 324, 571, 592, 609, 690
CfoI GCGC 2 cut(s) 270, 525
ClaI ATCGAT 1 cut(s) 141
CseI GACGC 1 cut(s) 315
CviAII CATG 5 cut(s) 93, 259, 276, 330, 556
CviJI RGCY 9 cut(s) 34, 322, 352, 377, 404, 441, 594, 611, 617
CviKI_1 RGCY 9 cut(s) 34, 322, 352, 377, 404, 441, 594, 611, 617
DdeI CTNAG 2 cut(s) 200, 363
DinI GGCGCC 1 cut(s) 524
DpnI GATC 4 cut(s) 47, 144, 205, 248
DpnII GATC 4 cut(s) 45, 142, 203, 246
DraIII CACNNNGTG 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 258
Eco32I GATATC 1 cut(s) 217
Eco72I CACGTG 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 675
EcoRV GATATC 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 258
EgeI GGCGCC 1 cut(s) 524
EheI GGCGCC 1 cut(s) 524
ErhI CCWWGG 1 cut(s) 258
Esp3I CGTCTC 1 cut(s) 643
FaeI CATG 5 cut(s) 96, 262, 279, 333, 559
FatI CATG 5 cut(s) 92, 258, 275, 329, 555
FbaI TGATCA 1 cut(s) 246
Fnu4HI GCNGC 4 cut(s) 375, 600, 657, 660
Fsp4HI GCNGC 4 cut(s) 375, 600, 657, 660
FspBI CTAG 1 cut(s) 401
GlaI GCGC 2 cut(s) 269, 524
GluI GCNGC 4 cut(s) 375, 600, 657, 660
GsuI CTGGAG 1 cut(s) 639
HaeII RGCGCY 2 cut(s) 271, 526
HgaI GACGC 1 cut(s) 315
HhaI GCGC 2 cut(s) 270, 525
Hin1I GRCGYC 2 cut(s) 523, 636
Hin1II CATG 5 cut(s) 96, 262, 279, 333, 559
Hin6I GCGC 2 cut(s) 268, 523
HinP1I GCGC 2 cut(s) 268, 523
HinfI GANTC 1 cut(s) 296
HphI GGTGA 4 cut(s) 275, 385, 502, 544
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 7 cut(s) 67, 203, 246, 295, 359, 366, 449
Hpy188III TCNNGA 1 cut(s) 146
Hpy8I GTNNAC 1 cut(s) 283
HpyAV CCTTC 3 cut(s) 479, 536, 559
HpyCH4IV ACGT 3 cut(s) 176, 288, 636
HpyCH4V TGCA 3 cut(s) 62, 374, 659
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 59, 596, 608
HpyF3I CTNAG 2 cut(s) 200, 363
HpySE526I ACGT 3 cut(s) 176, 288, 636
Hsp92I GRCGYC 2 cut(s) 523, 636
Hsp92II CATG 5 cut(s) 96, 262, 279, 333, 559
HspAI GCGC 2 cut(s) 268, 523
KasI GGCGCC 1 cut(s) 522
Ksp22I TGATCA 1 cut(s) 246
Kzo9I GATC 4 cut(s) 45, 142, 203, 246
LmnI GCTCC 1 cut(s) 265
LpnPI CCDG 7 cut(s) 131, 407, 555, 593, 603, 662, 689
Lsp1109I GCAGC 3 cut(s) 386, 643, 671
LweI GCATC 2 cut(s) 71, 611
MaeI CTAG 1 cut(s) 401
MaeII ACGT 3 cut(s) 176, 288, 636
MaeIII GTNAC 2 cut(s) 391, 583
MalI GATC 4 cut(s) 47, 144, 205, 248
MboI GATC 4 cut(s) 45, 142, 203, 246
MboII GAAGA 3 cut(s) 379, 401, 469
MluCI AATT 1 cut(s) 456
Mly113I GGCGCC 1 cut(s) 523
MlyI GAGTC 1 cut(s) 305
MmeI TCCRAC 1 cut(s) 382
MnlI CCTC 7 cut(s) 174, 209, 281, 372, 518, 574, 614
MseI TTAA 1 cut(s) 491
MslI CAYNNNNRTG 2 cut(s) 67, 237
MspA1I CMGCKG 1 cut(s) 569
MspCI CTTAAG 1 cut(s) 490
MspR9I CCNGG 1 cut(s) 677
MvaI CCWGG 1 cut(s) 677
MvnI CGCG 1 cut(s) 667
MwoI GCNNNNNNNGC 4 cut(s) 50, 59, 596, 608
NarI GGCGCC 1 cut(s) 523
NcoI CCATGG 1 cut(s) 258
NdeII GATC 4 cut(s) 45, 142, 203, 246
NlaIII CATG 5 cut(s) 96, 262, 279, 333, 559
NlaIV GGNNCC 2 cut(s) 256, 524
NmuCI GTSAC 2 cut(s) 391, 583
PcsI WCGNNNNNNNCGW 1 cut(s) 173
PkrI GCNGC 4 cut(s) 376, 601, 658, 661
PleI GAGTC 1 cut(s) 304
PluTI GGCGCC 1 cut(s) 526
PmaCI CACGTG 1 cut(s) 289
PmlI CACGTG 1 cut(s) 289
PpsI GAGTC 1 cut(s) 304
Ppu21I YACGTR 1 cut(s) 289
PsiI TTATAA 1 cut(s) 461
Psp6I CCWGG 1 cut(s) 675
PspCI CACGTG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 675
PspN4I GGNNCC 2 cut(s) 256, 524
PstI CTGCAG 1 cut(s) 661
RseI CAYNNNNRTG 2 cut(s) 67, 237
SaqAI TTAA 1 cut(s) 491
SatI GCNGC 4 cut(s) 375, 600, 657, 660
Sau3AI GATC 4 cut(s) 45, 142, 203, 246
SchI GAGTC 1 cut(s) 305
ScrFI CCNGG 1 cut(s) 677
SfaNI GCATC 2 cut(s) 71, 611
SfcI CTRYAG 3 cut(s) 317, 347, 657
SfoI GGCGCC 1 cut(s) 524
SmiMI CAYNNNNRTG 2 cut(s) 67, 237
SmlI CTYRAG 1 cut(s) 490
SmoI CTYRAG 1 cut(s) 490
Sse9I AATT 1 cut(s) 456
SsiI CCGC 4 cut(s) 101, 567, 599, 665
SspDI GGCGCC 1 cut(s) 522
SspI AATATT 1 cut(s) 432
SspMI CTAG 1 cut(s) 401
StyD4I CCNGG 1 cut(s) 675
StyI CCWWGG 1 cut(s) 258
TaiI ACGT 3 cut(s) 179, 291, 639
TaqI TCGA 2 cut(s) 141, 516
TasI AATT 1 cut(s) 456
TauI GCSGC 1 cut(s) 602
Tru1I TTAA 1 cut(s) 491
Tru9I TTAA 1 cut(s) 491
TseFI GTSAC 2 cut(s) 391, 583
TseI GCWGC 3 cut(s) 374, 656, 659
Tsp45I GTSAC 2 cut(s) 391, 583
TspDTI ATGAA 3 cut(s) 73, 214, 518
TspGWI ACGGA 1 cut(s) 182
Vha464I CTTAAG 1 cut(s) 490
XspI CTAG 1 cut(s) 401
ZraI GACGTC 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.