Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000065.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

4353 .. 4751

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ctgcagtatgttgcgggaattgcaaatcagagcgttgtagttaccgttgtgaggtgtttggagcacagcactactcctccaagccccatcaccaaccccgacagggatcttgatgagactgcagtggcagagtttcgaaggcagaatgggtcggtggaattcatagagaaggtggtagtcggcaacattatagaaacggtggcgggcatagttcagggcagggaatacaacctggtgatcgtggggaagcagcaccacccttcaacaattgttgcagaattggctcacaatcagctggagcataccgaactgggaccaattggagacgcattagcttcatcctcacatgggatttcgtgctccgtgcttgtgatacaaacaccacagattagcaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006623 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0006885 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015672 GO:0015833 GO:0019725 GO:0030003 GO:0030004 GO:0030007 GO:0030104 GO:0033036 GO:0033365 GO:0034613 GO:0042592 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

132

Amino Acids

14.16

Weight (kDa)

5.39

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CHX17_C	PF23259	36 - 127	1.1e-07	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	14, 203
AclWI	GGATC	1 cut(s)	114
AcsI	RAATTY	1 cut(s)	158
AfiI	CCNNNNNNNGG	3 cut(s)	51, 103, 348
AgsI	TTSAA	1 cut(s)	264
AjnI	CCWGG	1 cut(s)	231
AluBI	AGCT	2 cut(s)	295, 335
AluI	AGCT	2 cut(s)	295, 335
Alw21I	GWGCWC	2 cut(s)	66, 362
Alw26I	GTCTC	2 cut(s)	110, 318
AlwI	GGATC	1 cut(s)	114
ApeKI	GCWGC	1 cut(s)	250
ApoI	RAATTY	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	314
AsuHPI	GGTGA	2 cut(s)	82, 247
AsuII	TTCGAA	1 cut(s)	136
AvaII	GGWCC	1 cut(s)	314
Bbv12I	GWGCWC	2 cut(s)	66, 362
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	1 cut(s)	95
BciT130I	CCWGG	1 cut(s)	233
BcoDI	GTCTC	2 cut(s)	110, 318
BfmI	CTRYAG	2 cut(s)	2, 120
BisI	GCNGC	1 cut(s)	251
BlsI	GCNGC	1 cut(s)	252
Bme1390I	CCNGG	1 cut(s)	233
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	1 cut(s)	315
BmrFI	CCNGG	1 cut(s)	233
BmrI	ACTGGG	1 cut(s)	320
BmuI	ACTGGG	1 cut(s)	320
BpmI	CTGGAG	1 cut(s)	317
Bpu14I	TTCGAA	1 cut(s)	136
BsaXI	ACNNNNNCTCC	2 cut(s)	61, 91
Bsc4I	CCNNNNNNNGG	3 cut(s)	51, 103, 348
Bse1I	ACTGG	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	233
BseGI	GGATG	1 cut(s)	338
BseLI	CCNNNNNNNGG	3 cut(s)	51, 103, 348
BseNI	ACTGG	1 cut(s)	315
BseRI	GAGGAG	1 cut(s)	66
BseXI	GCAGC	1 cut(s)	262
BsiHKAI	GWGCWC	2 cut(s)	66, 362
BslFI	GGGAC	1 cut(s)	327
BslI	CCNNNNNNNGG	3 cut(s)	51, 103, 348
BsmAI	GTCTC	2 cut(s)	110, 318
BsmBI	CGTCTC	1 cut(s)	318
BsmFI	GGGAC	1 cut(s)	327
Bsp119I	TTCGAA	1 cut(s)	136
Bsp1286I	GDGCHC	2 cut(s)	66, 362
Bsp143I	GATC	2 cut(s)	106, 237
BspACI	CCGC	2 cut(s)	14, 203
BspLI	GGNNCC	1 cut(s)	315
BspMAI	CTGCAG	2 cut(s)	6, 124
BspPI	GGATC	1 cut(s)	114
BspT104I	TTCGAA	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	315
BssMI	GATC	2 cut(s)	106, 237
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	2 cut(s)	46, 199
BstBI	TTCGAA	1 cut(s)	136
BstC8I	GCNNGC	1 cut(s)	205
BstF5I	GGATG	1 cut(s)	338
BstKTI	GATC	2 cut(s)	109, 240
BstMAI	GTCTC	2 cut(s)	110, 318
BstMBI	GATC	2 cut(s)	106, 237
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 281
BstNI	CCWGG	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	231
BstSFI	CTRYAG	2 cut(s)	2, 120
BstV1I	GCAGC	1 cut(s)	262
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	338
BtsI	GCAGTG	1 cut(s)	129
BtsIMutI	CAGTG	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	205
Cfr13I	GGNCC	1 cut(s)	314
CseI	GACGC	1 cut(s)	335
CsiI	ACCWGGT	1 cut(s)	231
CviAII	CATG	1 cut(s)	347
CviJI	RGCY	4 cut(s)	84, 284, 295, 335
CviKI_1	RGCY	4 cut(s)	84, 284, 295, 335
DpnI	GATC	2 cut(s)	108, 239
DpnII	GATC	2 cut(s)	106, 237
Eco47I	GGWCC	1 cut(s)	314
EcoRI	GAATTC	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	231
Esp3I	CGTCTC	1 cut(s)	318
FaeI	CATG	1 cut(s)	350
FaiI	YATR	6 cut(s)	9, 164, 191, 209, 303, 348
FaqI	GGGAC	1 cut(s)	327
FatI	CATG	1 cut(s)	346
FauI	CCCGC	2 cut(s)	7, 196
Fnu4HI	GCNGC	1 cut(s)	251
FokI	GGATG	1 cut(s)	325
Fsp4HI	GCNGC	1 cut(s)	251
GluI	GCNGC	1 cut(s)	251
GsuI	CTGGAG	1 cut(s)	317
HgaI	GACGC	1 cut(s)	335
Hin1II	CATG	1 cut(s)	350
HphI	GGTGA	2 cut(s)	82, 247
Hpy188I	TCNGA	1 cut(s)	30
Hpy188III	TCNNGA	1 cut(s)	110
HpyAV	CCTTC	3 cut(s)	132, 163, 270
HpyCH4III	ACNGT	2 cut(s)	46, 199
HpyCH4V	TGCA	4 cut(s)	4, 23, 122, 275
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 281
Hsp92II	CATG	1 cut(s)	350
Kzo9I	GATC	2 cut(s)	106, 237
LmnI	GCTCC	3 cut(s)	61, 298, 365
LpnPI	CCDG	7 cut(s)	88, 200, 205, 218, 245, 281, 296
Lsp1109I	GCAGC	1 cut(s)	262
MabI	ACCWGGT	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	2 cut(s)	108, 239
MboI	GATC	2 cut(s)	106, 237
MfeI	CAATTG	2 cut(s)	267, 318
MflI	RGATCY	1 cut(s)	106
MhlI	GDGCHC	2 cut(s)	66, 362
MluCI	AATT	5 cut(s)	18, 158, 267, 278, 318
MnlI	CCTC	3 cut(s)	45, 87, 352
MspA1I	CMGCKG	1 cut(s)	295
MspR9I	CCNGG	1 cut(s)	233
MunI	CAATTG	2 cut(s)	267, 318
MvaI	CCWGG	1 cut(s)	233
MwoI	GCNNNNNNNGC	2 cut(s)	20, 281
NdeII	GATC	2 cut(s)	106, 237
NlaIII	CATG	1 cut(s)	350
NlaIV	GGNNCC	1 cut(s)	315
NspV	TTCGAA	1 cut(s)	136
PkrI	GCNGC	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	1 cut(s)	315
PspPI	GGNCC	1 cut(s)	314
PstI	CTGCAG	2 cut(s)	6, 124
PsuI	RGATCY	1 cut(s)	106
PvuII	CAGCTG	1 cut(s)	295
SatI	GCNGC	1 cut(s)	251
Sau3AI	GATC	2 cut(s)	106, 237
Sau96I	GGNCC	1 cut(s)	314
ScrFI	CCNGG	1 cut(s)	233
SduI	GDGCHC	2 cut(s)	66, 362
SetI	ASST	5 cut(s)	56, 174, 234, 297, 337
SexAI	ACCWGGT	1 cut(s)	231
SfcI	CTRYAG	2 cut(s)	2, 120
SfuI	TTCGAA	1 cut(s)	136
SinI	GGWCC	1 cut(s)	314
Sse9I	AATT	5 cut(s)	18, 158, 267, 278, 318
SsiI	CCGC	2 cut(s)	14, 203
StyD4I	CCNGG	1 cut(s)	231
TaaI	ACNGT	2 cut(s)	46, 199
TaqI	TCGA	1 cut(s)	136
TasI	AATT	5 cut(s)	18, 158, 267, 278, 318
TscAI	CASTG	1 cut(s)	129
TseI	GCWGC	1 cut(s)	250
TspDTI	ATGAA	2 cut(s)	151, 327
TspGWI	ACGGA	1 cut(s)	352
TspRI	CASTG	1 cut(s)	129
VpaK11BI	GGWCC	1 cut(s)	314
XapI	RAATTY	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.