Rmu_ssc0000073.1_g000001
MYB Family

Myb-related protein 308-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000073.1
OG0014893
Physical Location & Seq
Reverse (-)
259 .. 1398
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 677 bp
gcttaatggggagatctccttgctgtgaaaaggctcacacgaacaaaggagcttggaccaaagaagaagatgatcgcctcattgcttatatccgagctcacggcgaaggctgctggcgctctctgcctaaagcagccggccttcttcgctgcggcaagagctgtaggctgcggtggatcaactacctcagaccggacctcaagcgcggaaatttcactgaagaagaagatgagctcatcatcaagctccatagcctcctcgggaacaaatggtctttgattgctgggagactaccgggaagaacagacaatgagataaagaactactggaatactcatataagaaggaagcttttgacaagaggtattgaccctgcaactcacagaccactcaatgaaacacctcaggactctgccacaaccaccactatctcttttgctgcttcttctgctattattaaagaagaagatcagaaaatcagcaccactgagtctttgaagagtgggggaagaggtgtctgcttttcttgcagtttggggttgaaggactcaaagagttgcagtagctgtgggattgataatattggtgccacaagtgccggcactagtaatattgcttatgatttcttgggattgaaaaatggggtgttggattacagaagcttggagatgaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

224

Amino Acids

24.82

Weight (kDa)

9.05

Isoelectric Point (pI)

49.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 15 - 62 5.2e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 18 - 77 1.2e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 68 - 112 1.8e-19 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 117 5.9e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38620
fragaria_vesca FvH4_2g01320 FvH4_2g01320
malus_domestica MD05G1120600.v1.1 MD10G1124100.v1.1
prunus_persica Prupe.8G164300_v2.0.a1
pyrus_communis pycom05g11440
rosa_chinensis RchiOBHm_Chr6g0252211
rosa_laevigata RLG00000015402
rosa_multiflora Rmu_ssc0000073.1_g000001
rosa_roxburghii Rroxscaffold_7G00216240
rosa_rugosa Rorug05G0506100.1
rosa_samantha Rh6BG015400 Rh6CG012500 Rh6DG013800
rosa_wichuraiana Rw6G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 586
AccII CGCG 1 cut(s) 206
AciI CCGC 3 cut(s) 152, 171, 206
AclWI GGATC 1 cut(s) 184
AcsI RAATTY 1 cut(s) 210
AcuI CTGAAG 1 cut(s) 239
AfiI CCNNNNNNNGG 1 cut(s) 192
AgsI TTSAA 3 cut(s) 498, 543, 636
AhlI ACTAGT 1 cut(s) 604
AluBI AGCT 8 cut(s) 52, 97, 161, 234, 246, 351, 566, 662
AluI AGCT 8 cut(s) 52, 97, 161, 234, 246, 351, 566, 662
Alw21I GWGCWC 2 cut(s) 99, 236
Alw26I GTCTC 1 cut(s) 282
AlwI GGATC 1 cut(s) 184
AlwNI CAGNNNCTG 1 cut(s) 566
Ama87I CYCGRG 1 cut(s) 259
AoxI GGCC 1 cut(s) 138
ApeKI GCWGC 5 cut(s) 110, 133, 149, 168, 439
ApoI RAATTY 1 cut(s) 210
AspLEI GCGC 2 cut(s) 119, 206
AspS9I GGNCC 2 cut(s) 56, 195
AsuC2I CCSGG 1 cut(s) 296
AvaI CYCGRG 1 cut(s) 259
AvaII GGWCC 2 cut(s) 56, 195
AxyI CCTNAGG 1 cut(s) 404
BanI GGYRCC 1 cut(s) 586
BanII GRGCYC 2 cut(s) 99, 236
Bbv12I GWGCWC 2 cut(s) 99, 236
BbvI GCAGC 5 cut(s) 97, 136, 145, 155, 426
BceAI ACGGC 1 cut(s) 117
BcnI CCSGG 1 cut(s) 296
BcoDI GTCTC 1 cut(s) 282
BcuI ACTAGT 1 cut(s) 604
BfaI CTAG 1 cut(s) 605
BfmI CTRYAG 1 cut(s) 162
BfoI RGCGCY 1 cut(s) 120
BglII AGATCT 1 cut(s) 13
BisI GCNGC 6 cut(s) 111, 134, 150, 153, 169, 440
BlsI GCNGC 6 cut(s) 112, 135, 151, 154, 170, 441
Bme1390I CCNGG 1 cut(s) 296
Bme18I GGWCC 2 cut(s) 56, 195
BmeT110I CYCGRG 1 cut(s) 259
BmgT120I GGNCC 2 cut(s) 56, 195
BmiI GGNNCC 1 cut(s) 588
BmrFI CCNGG 1 cut(s) 296
BpuEI CTTGAG 1 cut(s) 184
BpuMI CCSGG 1 cut(s) 296
BsaJI CCNNGG 1 cut(s) 258
BsaWI WCCGGW 1 cut(s) 192
Bsc4I CCNNNNNNNGG 1 cut(s) 192
Bse118I RCCGGY 2 cut(s) 136, 598
Bse1I ACTGG 1 cut(s) 331
Bse21I CCTNAGG 1 cut(s) 404
Bse3DI GCAATG 1 cut(s) 80
BseDI CCNNGG 1 cut(s) 258
BseLI CCNNNNNNNGG 1 cut(s) 192
BseMI GCAATG 1 cut(s) 80
BseMII CTCAG 3 cut(s) 201, 418, 479
BseNI ACTGG 1 cut(s) 331
BseRI GAGGAG 1 cut(s) 247
BseXI GCAGC 5 cut(s) 97, 136, 145, 155, 426
BseYI CCCAGC 1 cut(s) 283
Bsh1236I CGCG 1 cut(s) 206
BshFI GGCC 1 cut(s) 140
BshNI GGYRCC 1 cut(s) 586
BsiHKAI GWGCWC 2 cut(s) 99, 236
BsiHKCI CYCGRG 1 cut(s) 259
BsiSI CCGG 4 cut(s) 137, 193, 295, 599
BslI CCNNNNNNNGG 1 cut(s) 192
BsmAI GTCTC 1 cut(s) 282
BsnI GGCC 1 cut(s) 140
BsoBI CYCGRG 1 cut(s) 259
Bsp1286I GDGCHC 2 cut(s) 99, 236
Bsp143I GATC 4 cut(s) 13, 72, 176, 468
BspACI CCGC 3 cut(s) 152, 171, 206
BspANI GGCC 1 cut(s) 140
BspCNI CTCAG 3 cut(s) 200, 417, 480
BspFNI CGCG 1 cut(s) 206
BspLI GGNNCC 1 cut(s) 588
BspPI GGATC 1 cut(s) 184
BspT107I GGYRCC 1 cut(s) 586
BsrDI GCAATG 1 cut(s) 80
BsrFI RCCGGY 2 cut(s) 136, 598
BsrI ACTGG 1 cut(s) 331
BssAI RCCGGY 2 cut(s) 136, 598
BssECI CCNNGG 1 cut(s) 258
BssMI GATC 4 cut(s) 13, 72, 176, 468
Bst6I CTCTTC 2 cut(s) 493, 504
BstC8I GCNNGC 3 cut(s) 115, 138, 600
BstDEI CTNAG 3 cut(s) 187, 404, 488
BstFNI CGCG 1 cut(s) 206
BstH2I RGCGCY 1 cut(s) 120
BstHHI GCGC 2 cut(s) 119, 206
BstKTI GATC 4 cut(s) 16, 75, 179, 471
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 4 cut(s) 13, 72, 176, 468
BstMWI GCNNNNNNNGC 8 cut(s) 110, 116, 123, 146, 158, 448, 527, 595
BstSCI CCNGG 1 cut(s) 294
BstSFI CTRYAG 1 cut(s) 162
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 5 cut(s) 97, 136, 145, 155, 426
BstX2I RGATCY 1 cut(s) 13
BstYI RGATCY 1 cut(s) 13
Bsu36I CCTNAGG 1 cut(s) 404
BsuRI GGCC 1 cut(s) 140
BtsIMutI CAGTG 2 cut(s) 215, 485
Cac8I GCNNGC 3 cut(s) 115, 138, 600
CaiI CAGNNNCTG 1 cut(s) 566
CfoI GCGC 2 cut(s) 119, 206
Cfr10I RCCGGY 2 cut(s) 136, 598
Cfr13I GGNCC 2 cut(s) 56, 195
DdeI CTNAG 3 cut(s) 187, 404, 488
DpnI GATC 4 cut(s) 15, 74, 178, 470
DpnII GATC 4 cut(s) 13, 72, 176, 468
Eam1104I CTCTTC 2 cut(s) 493, 504
EarI CTCTTC 2 cut(s) 493, 504
Ecl136II GAGCTC 2 cut(s) 97, 234
Eco24I GRGCYC 2 cut(s) 99, 236
Eco47I GGWCC 2 cut(s) 56, 195
Eco53kI GAGCTC 2 cut(s) 97, 234
Eco57I CTGAAG 1 cut(s) 239
Eco81I CCTNAGG 1 cut(s) 404
Eco88I CYCGRG 1 cut(s) 259
EcoICRI GAGCTC 2 cut(s) 97, 234
EcoT38I GRGCYC 2 cut(s) 99, 236
FaiI YATR 5 cut(s) 89, 251, 338, 340, 620
Fnu4HI GCNGC 6 cut(s) 111, 134, 150, 153, 169, 440
FriOI GRGCYC 2 cut(s) 99, 236
Fsp4HI GCNGC 6 cut(s) 111, 134, 150, 153, 169, 440
FspBI CTAG 1 cut(s) 605
GlaI GCGC 2 cut(s) 118, 205
GluI GCNGC 6 cut(s) 111, 134, 150, 153, 169, 440
GsaI CCCAGC 1 cut(s) 287
HaeII RGCGCY 1 cut(s) 120
HaeIII GGCC 1 cut(s) 140
HapII CCGG 4 cut(s) 137, 193, 295, 599
HhaI GCGC 2 cut(s) 119, 206
Hin6I GCGC 2 cut(s) 117, 204
HinP1I GCGC 2 cut(s) 117, 204
HindIII AAGCTT 2 cut(s) 349, 660
HinfI GANTC 3 cut(s) 409, 490, 547
HpaII CCGG 4 cut(s) 137, 193, 295, 599
Hpy188I TCNGA 3 cut(s) 94, 190, 473
Hpy188III TCNNGA 2 cut(s) 261, 406
HpyAV CCTTC 4 cut(s) 100, 151, 338, 537
HpyCH4V TGCA 3 cut(s) 376, 530, 560
HpyF10VI GCNNNNNNNGC 8 cut(s) 110, 116, 123, 146, 158, 448, 527, 595
HpyF3I CTNAG 3 cut(s) 187, 404, 488
HspAI GCGC 2 cut(s) 117, 204
KroI GCCGGC 2 cut(s) 136, 598
KroNI GCCGGC 2 cut(s) 138, 600
Kzo9I GATC 4 cut(s) 13, 72, 176, 468
LmnI GCTCC 2 cut(s) 49, 251
LpnPI CCDG 9 cut(s) 99, 150, 206, 269, 308, 312, 386, 391, 612
Lsp1109I GCAGC 5 cut(s) 97, 136, 145, 155, 426
MaeI CTAG 1 cut(s) 605
MalI GATC 4 cut(s) 15, 74, 178, 470
MboI GATC 4 cut(s) 13, 72, 176, 468
MflI RGATCY 1 cut(s) 13
MhlI GDGCHC 2 cut(s) 99, 236
MluCI AATT 1 cut(s) 210
MlyI GAGTC 3 cut(s) 403, 499, 541
MmeI TCCRAC 1 cut(s) 629
MnlI CCTC 8 cut(s) 88, 196, 208, 265, 268, 355, 413, 505
MroNI GCCGGC 2 cut(s) 136, 598
MseI TTAA 2 cut(s) 4, 458
MspI CCGG 4 cut(s) 137, 193, 295, 599
MspR9I CCNGG 1 cut(s) 296
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 8 cut(s) 110, 116, 123, 146, 158, 448, 527, 595
NaeI GCCGGC 2 cut(s) 138, 600
NciI CCSGG 1 cut(s) 296
NdeII GATC 4 cut(s) 13, 72, 176, 468
NgoMIV GCCGGC 2 cut(s) 136, 598
NlaIV GGNNCC 1 cut(s) 588
PdiI GCCGGC 2 cut(s) 138, 600
PkrI GCNGC 6 cut(s) 112, 135, 151, 154, 170, 441
PleI GAGTC 3 cut(s) 403, 498, 541
PpsI GAGTC 3 cut(s) 403, 498, 541
Psp124BI GAGCTC 2 cut(s) 99, 236
PspFI CCCAGC 1 cut(s) 283
PspN4I GGNNCC 1 cut(s) 588
PspPI GGNCC 2 cut(s) 56, 195
PstNI CAGNNNCTG 1 cut(s) 566
PsuI RGATCY 1 cut(s) 13
SacI GAGCTC 2 cut(s) 99, 236
SaqAI TTAA 2 cut(s) 4, 458
SatI GCNGC 6 cut(s) 111, 134, 150, 153, 169, 440
Sau3AI GATC 4 cut(s) 13, 72, 176, 468
Sau96I GGNCC 2 cut(s) 56, 195
SchI GAGTC 3 cut(s) 403, 499, 541
ScrFI CCNGG 1 cut(s) 296
SduI GDGCHC 2 cut(s) 99, 236
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 2 cut(s) 56, 195
SmlI CTYRAG 1 cut(s) 199
SmoI CTYRAG 1 cut(s) 199
SpeI ACTAGT 1 cut(s) 604
Sse9I AATT 1 cut(s) 210
SsiI CCGC 3 cut(s) 152, 171, 206
SspI AATATT 2 cut(s) 582, 612
SspMI CTAG 1 cut(s) 605
SstI GAGCTC 2 cut(s) 99, 236
StyD4I CCNGG 1 cut(s) 294
TasI AATT 1 cut(s) 210
TauI GCSGC 1 cut(s) 155
Tru1I TTAA 2 cut(s) 4, 458
Tru9I TTAA 2 cut(s) 4, 458
TscAI CASTG 2 cut(s) 222, 492
TseI GCWGC 5 cut(s) 110, 133, 149, 168, 439
TspDTI ATGAA 1 cut(s) 410
TspRI CASTG 2 cut(s) 222, 492
VpaK11BI GGWCC 2 cut(s) 56, 195
XapI RAATTY 1 cut(s) 210
XspI CTAG 1 cut(s) 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.