Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000083.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

142456 .. 142797

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

atgctgccttaccaaaaccttcaagaagcagaagaagcccatggcagagctctcagtgtggcagagaagctatggttccgatactcggctcacaaaccagattacgtccttcactaccataacatcatcttcctcatgctgttctacactttggctcctctgccgtacgtgttcataggactcggctggttcaagaacatggacaagtacaagattcaaccgaaggtgaaggactccttctctaacatgttcaagtgctataagaatgtcatgggaagctttcttcttgttgttggccctctgcaagtgatttcataccccacgatccaggtaatttgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005795 GO:0005802 GO:0007275 GO:0007568 GO:0008150 GO:0010150 GO:0012505 GO:0016417 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019707 GO:0031323 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0065007 GO:0090693 GO:0097708 GO:0098791 GO:0099402 GO:0140096 GO:1900055 GO:2000024 GO:2000026 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

DHHC

Protein Analysis

113

Amino Acids

13.26

Weight (kDa)

9.08

Isoelectric Point (pI)

35.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	319
AfaI	GTAC	2 cut(s)	167, 209
AfiI	CCNNNNNNNGG	1 cut(s)	85
AflIII	ACRYGT	2 cut(s)	168, 246
AgsI	TTSAA	4 cut(s)	23, 193, 218, 253
AjnI	CCWGG	1 cut(s)	327
AluBI	AGCT	3 cut(s)	50, 70, 279
AluI	AGCT	3 cut(s)	50, 70, 279
Alw21I	GWGCWC	1 cut(s)	52
AlwI	GGATC	1 cut(s)	319
AoxI	GGCC	1 cut(s)	295
ApeKI	GCWGC	1 cut(s)	4
AspS9I	GGNCC	1 cut(s)	296
AsuHPI	GGTGA	1 cut(s)	238
BanII	GRGCYC	1 cut(s)	52
Bbv12I	GWGCWC	1 cut(s)	52
BceAI	ACGGC	1 cut(s)	148
BciT130I	CCWGG	1 cut(s)	329
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	296
BmiI	GGNNCC	2 cut(s)	77, 156
BmrFI	CCNGG	1 cut(s)	329
BsaAI	YACGTR	1 cut(s)	169
BsaJI	CCNNGG	1 cut(s)	40
BsaXI	ACNNNNNCTCC	2 cut(s)	139, 169
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	1 cut(s)	40
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseMII	CTCAG	1 cut(s)	67
BseRI	GAGGAG	1 cut(s)	147
BshFI	GGCC	1 cut(s)	297
BsiHKAI	GWGCWC	1 cut(s)	52
BsiWI	CGTACG	1 cut(s)	165
BslI	CCNNNNNNNGG	1 cut(s)	85
BsnI	GGCC	1 cut(s)	297
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp143I	GATC	1 cut(s)	324
Bsp19I	CCATGG	1 cut(s)	40
BspANI	GGCC	1 cut(s)	297
BspCNI	CTCAG	1 cut(s)	66
BspLI	GGNNCC	2 cut(s)	77, 156
BspPI	GGATC	1 cut(s)	319
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	1 cut(s)	324
BssT1I	CCWWGG	1 cut(s)	40
Bst2UI	CCWGG	1 cut(s)	329
BstBAI	YACGTR	1 cut(s)	169
BstDEI	CTNAG	1 cut(s)	53
BstDSI	CCRYGG	1 cut(s)	40
BstKTI	GATC	1 cut(s)	327
BstMBI	GATC	1 cut(s)	324
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNI	CCWGG	1 cut(s)	329
BstNSI	RCATGY	1 cut(s)	250
BstSCI	CCNGG	1 cut(s)	327
BsuRI	GGCC	1 cut(s)	297
BtgI	CCRYGG	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	61
Cfr13I	GGNCC	1 cut(s)	296
Csp6I	GTAC	2 cut(s)	166, 208
CviAII	CATG	5 cut(s)	41, 136, 199, 247, 271
CviJI	RGCY	8 cut(s)	38, 50, 70, 89, 155, 186, 279, 297
CviKI_1	RGCY	8 cut(s)	38, 50, 70, 89, 155, 186, 279, 297
CviQI	GTAC	2 cut(s)	166, 208
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	1 cut(s)	326
DpnII	GATC	1 cut(s)	324
Ecl136II	GAGCTC	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	52
Eco53kI	GAGCTC	1 cut(s)	50
EcoICRI	GAGCTC	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	327
EcoT14I	CCWWGG	1 cut(s)	40
EcoT38I	GRGCYC	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	5 cut(s)	44, 139, 202, 250, 274
FalI	AAGNNNNNCTT	2 cut(s)	221, 253
FatI	CATG	5 cut(s)	40, 135, 198, 246, 270
Fnu4HI	GCNGC	1 cut(s)	5
FriOI	GRGCYC	1 cut(s)	52
Fsp4HI	GCNGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	5
HaeIII	GGCC	1 cut(s)	297
Hin1II	CATG	5 cut(s)	44, 139, 202, 250, 274
HindIII	AAGCTT	1 cut(s)	277
HinfI	GANTC	3 cut(s)	180, 214, 233
HphI	GGTGA	1 cut(s)	238
Hpy188I	TCNGA	1 cut(s)	80
Hpy188III	TCNNGA	2 cut(s)	23, 193
HpyAV	CCTTC	5 cut(s)	29, 119, 217, 223, 247
HpyCH4IV	ACGT	2 cut(s)	105, 168
HpyCH4V	TGCA	1 cut(s)	304
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	1 cut(s)	53
HpySE526I	ACGT	2 cut(s)	105, 168
Hsp92II	CATG	5 cut(s)	44, 139, 202, 250, 274
Kzo9I	GATC	1 cut(s)	324
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	3 cut(s)	111, 172, 314
MaeII	ACGT	2 cut(s)	105, 168
MalI	GATC	1 cut(s)	326
MboI	GATC	1 cut(s)	324
MboII	GAAGA	3 cut(s)	44, 121, 275
MhlI	GDGCHC	1 cut(s)	52
MluCI	AATT	1 cut(s)	333
MlyI	GAGTC	2 cut(s)	174, 227
MnlI	CCTC	3 cut(s)	143, 168, 309
MseI	TTAA	1 cut(s)	340
MspR9I	CCNGG	1 cut(s)	329
MvaI	CCWGG	1 cut(s)	329
MwoI	GCNNNNNNNGC	1 cut(s)	35
NcoI	CCATGG	1 cut(s)	40
NdeII	GATC	1 cut(s)	324
NlaIII	CATG	5 cut(s)	44, 139, 202, 250, 274
NlaIV	GGNNCC	2 cut(s)	77, 156
NmeAIII	GCCGAG	2 cut(s)	65, 162
NspI	RCATGY	1 cut(s)	250
PciI	ACATGT	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	214
Pfl23II	CGTACG	1 cut(s)	165
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	2 cut(s)	174, 227
PpsI	GAGTC	2 cut(s)	174, 227
Ppu21I	YACGTR	1 cut(s)	169
PscI	ACATGT	1 cut(s)	246
Psp124BI	GAGCTC	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	327
PspGI	CCWGG	1 cut(s)	327
PspLI	CGTACG	1 cut(s)	165
PspN4I	GGNNCC	2 cut(s)	77, 156
PspPI	GGNCC	1 cut(s)	296
RsaI	GTAC	2 cut(s)	167, 209
RsaNI	GTAC	2 cut(s)	166, 208
SacI	GAGCTC	1 cut(s)	52
SaqAI	TTAA	1 cut(s)	340
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	1 cut(s)	324
Sau96I	GGNCC	1 cut(s)	296
SchI	GAGTC	2 cut(s)	174, 227
ScrFI	CCNGG	1 cut(s)	329
SduI	GDGCHC	1 cut(s)	52
SetI	ASST	8 cut(s)	21, 52, 72, 108, 171, 228, 281, 333
Sse9I	AATT	1 cut(s)	333
SstI	GAGCTC	1 cut(s)	52
StyD4I	CCNGG	1 cut(s)	327
StyI	CCWWGG	1 cut(s)	40
TaiI	ACGT	2 cut(s)	108, 171
TasI	AATT	1 cut(s)	333
TatI	WGTACW	1 cut(s)	207
TfiI	GAWTC	1 cut(s)	214
Tru1I	TTAA	1 cut(s)	340
Tru9I	TTAA	1 cut(s)	340
TscAI	CASTG	1 cut(s)	61
TseI	GCWGC	1 cut(s)	4
TspDTI	ATGAA	2 cut(s)	163, 303
TspRI	CASTG	1 cut(s)	61
XceI	RCATGY	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.