Rmu_ssc0000084.1_g000021

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000084.1
N/A
Physical Location & Seq
Forward (+)
91363 .. 92177
815 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 369 bp
atgttatgcaatcctaagaggataagtaacctgaacaaattggactttgatccattgggaacaactggctctggatatcacaggataagtaacctgaacaaattggactttgatccattgggaacaactggctttggatatcacaggtgggttcgtgatgtcacccagcatctcaaggccgatgaaatcctggatacgattctcgagcctagccaatacgtgctgattgttgagcaagctcaagctttggaagcaaatagagcagccttagaggcaaatatggcgaaaaccatcatcataatgactcgtcatatggatgattcgctcaagtacgagtgtatgaatgaagaagaccccagaaggctgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

122

Amino Acids

13.98

Weight (kDa)

5.5

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 44, 107
AfaI GTAC 1 cut(s) 332
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 2 cut(s) 239, 245
AluI AGCT 2 cut(s) 239, 245
AlwI GGATC 2 cut(s) 44, 107
Ama87I CYCGRG 1 cut(s) 203
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 154
AvaI CYCGRG 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 357
BbvI GCAGC 1 cut(s) 275
BccI CCATC 1 cut(s) 299
BciT130I CCWGG 1 cut(s) 191
BciVI GTATCC 1 cut(s) 187
BfaI CTAG 1 cut(s) 210
BfmI CTRYAG 1 cut(s) 365
BfuI GTATCC 1 cut(s) 187
BglI GCCNNNNNGGC 1 cut(s) 272
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
Bme1390I CCNGG 1 cut(s) 191
BmeT110I CYCGRG 1 cut(s) 203
BmrFI CCNGG 1 cut(s) 191
BmsI GCATC 1 cut(s) 178
BpiI GAAGAC 1 cut(s) 357
BpuEI CTTGAG 3 cut(s) 158, 225, 311
BsaAI YACGTR 1 cut(s) 220
Bse1I ACTGG 2 cut(s) 70, 133
BseBI CCWGG 1 cut(s) 191
BseGI GGATG 1 cut(s) 322
BseNI ACTGG 2 cut(s) 70, 133
BseXI GCAGC 1 cut(s) 275
BseYI CCCAGC 1 cut(s) 165
BshFI GGCC 1 cut(s) 179
BsiHKCI CYCGRG 1 cut(s) 203
BsnI GGCC 1 cut(s) 179
BsoBI CYCGRG 1 cut(s) 203
Bsp143I GATC 2 cut(s) 49, 112
BspANI GGCC 1 cut(s) 179
BspPI GGATC 2 cut(s) 44, 107
BsrI ACTGG 2 cut(s) 70, 133
BssMI GATC 2 cut(s) 49, 112
Bst2UI CCWGG 1 cut(s) 191
BstBAI YACGTR 1 cut(s) 220
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 2 cut(s) 15, 268
BstF5I GGATG 1 cut(s) 322
BstKTI GATC 2 cut(s) 52, 115
BstMBI GATC 2 cut(s) 49, 112
BstMWI GCNNNNNNNGC 4 cut(s) 251, 260, 272, 281
BstNI CCWGG 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 189
BstSFI CTRYAG 1 cut(s) 365
BstV1I GCAGC 1 cut(s) 275
BstV2I GAAGAC 1 cut(s) 357
BsuI GTATCC 1 cut(s) 187
BsuRI GGCC 1 cut(s) 179
BtsCI GGATG 1 cut(s) 322
Cac8I GCNNGC 1 cut(s) 237
Csp6I GTAC 1 cut(s) 331
CviJI RGCY 9 cut(s) 69, 132, 179, 208, 213, 239, 245, 266, 364
CviKI_1 RGCY 9 cut(s) 69, 132, 179, 208, 213, 239, 245, 266, 364
CviQI GTAC 1 cut(s) 331
DdeI CTNAG 2 cut(s) 15, 268
DpnI GATC 2 cut(s) 51, 114
DpnII GATC 2 cut(s) 49, 112
Eco32I GATATC 2 cut(s) 77, 140
Eco88I CYCGRG 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 189
EcoRV GATATC 2 cut(s) 77, 140
FaiI YATR 6 cut(s) 7, 281, 299, 312, 314, 341
FauNDI CATATG 1 cut(s) 312
Fnu4HI GCNGC 1 cut(s) 264
FokI GGATG 1 cut(s) 329
Fsp4HI GCNGC 1 cut(s) 264
FspBI CTAG 1 cut(s) 210
GluI GCNGC 1 cut(s) 264
GsaI CCCAGC 1 cut(s) 169
HaeIII GGCC 1 cut(s) 179
HindIII AAGCTT 1 cut(s) 243
HinfI GANTC 3 cut(s) 199, 304, 320
HphI GGTGA 1 cut(s) 154
Hpy188III TCNNGA 3 cut(s) 72, 155, 203
HpyAV CCTTC 1 cut(s) 354
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 1 cut(s) 9
HpyF10VI GCNNNNNNNGC 4 cut(s) 251, 260, 272, 281
HpyF3I CTNAG 2 cut(s) 15, 268
HpySE526I ACGT 1 cut(s) 219
Kzo9I GATC 2 cut(s) 49, 112
Lsp1109I GCAGC 1 cut(s) 275
LweI GCATC 1 cut(s) 178
MaeI CTAG 1 cut(s) 210
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 3 cut(s) 26, 89, 160
MalI GATC 2 cut(s) 51, 114
MboI GATC 2 cut(s) 49, 112
MboII GAAGA 2 cut(s) 359, 362
MluCI AATT 2 cut(s) 38, 101
MlyI GAGTC 1 cut(s) 298
MnlI CCTC 2 cut(s) 12, 265
MslI CAYNNNNRTG 2 cut(s) 299, 315
MspR9I CCNGG 1 cut(s) 191
MvaI CCWGG 1 cut(s) 191
MwoI GCNNNNNNNGC 4 cut(s) 251, 260, 272, 281
NdeI CATATG 1 cut(s) 312
NdeII GATC 2 cut(s) 49, 112
NmuCI GTSAC 1 cut(s) 160
PaeR7I CTCGAG 1 cut(s) 203
PfeI GAWTC 2 cut(s) 199, 320
PfoI TCCNGGA 1 cut(s) 189
PkrI GCNGC 1 cut(s) 265
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
Ppu21I YACGTR 1 cut(s) 220
Psp6I CCWGG 1 cut(s) 189
PspFI CCCAGC 1 cut(s) 165
PspGI CCWGG 1 cut(s) 189
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
RseI CAYNNNNRTG 2 cut(s) 299, 315
SatI GCNGC 1 cut(s) 264
Sau3AI GATC 2 cut(s) 49, 112
SchI GAGTC 1 cut(s) 298
ScrFI CCNGG 1 cut(s) 191
SetI ASST 6 cut(s) 33, 96, 149, 222, 241, 247
SfaNI GCATC 1 cut(s) 178
SfcI CTRYAG 1 cut(s) 365
Sfr274I CTCGAG 1 cut(s) 203
SlaI CTCGAG 1 cut(s) 203
SmiMI CAYNNNNRTG 2 cut(s) 299, 315
SmlI CTYRAG 4 cut(s) 173, 203, 240, 326
SmoI CTYRAG 4 cut(s) 173, 203, 240, 326
Sse9I AATT 2 cut(s) 38, 101
SspMI CTAG 1 cut(s) 210
StyD4I CCNGG 1 cut(s) 189
TaiI ACGT 1 cut(s) 222
TaqI TCGA 1 cut(s) 204
TasI AATT 2 cut(s) 38, 101
TfiI GAWTC 2 cut(s) 199, 320
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 1 cut(s) 263
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 3 cut(s) 198, 356, 360
XhoI CTCGAG 1 cut(s) 203
XspI CTAG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.