Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000087.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

59735 .. 64198

Gene Structure 4464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000087.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

atgatgctctctcgttacatcacaaaagatctggtgaaggctctcatcgcccaccagatggtgatgtcaaggtaccaaggcaagtccccgaagtatgatgtgaaatccaacatcatgctctcccgtcacttcgctaaggacagatccttactggagagcatgatgttggatttcgcgtcgcgtcatacttgggggatttgctttggtatcgtggtatcaccatcttcgacttcatggcagctttgctctccttgctcagcaaattacagatctagaagtgagggcattagcggtgaaggcgagggtccagctatcggcatcgatctcggaacaacttattcatgggttggagtttggcaacacgatcgcgttgagatcatagccaatgatcagggcaacagaacgacaccatcgtatgttgcttttaccaatattggccgtttgatcggtgatgctgccaagaaccaagtcaccatcaaccctatcaacactgtttttgatgcaaagcgattgattggcaggaaatttagtgatgcatgtgttaagagtgatatgaaattatggcctttcaaggttcgtggtttggttgacaagcctatgattatgatcaactacaagaatgaaaagaaacaatttgccgctgaggagatatcttcaatggttctccataagatgcgcgaaattgcagaggcctatcttggactaacaataaagaatgttgttttaactgtaccagcatacttcaatgactctcaacgacaggctacaaaagatgctggggtgattgcaggcatgaatgtgatgcgtattcttaatgagccaacagccgcagctattgcatatggtcttgagaaaattgttgatgatattgttcttgttggtggatctactagaattcccaagggacaacaactattgcaagatttctttaatggtaaggagctttgcaagagcatcaatcctgacgaagcaattgcatatggtgctgccttacaggctgcagttttgcgtggtggcatcgagaagagggggttatctagagtggaaattgagagcatgatcaaggtcaaggaagcagagaagtacaagttagaggaccaggacaataacgagaaagtgaaggctaagcctgcattggtagactgcctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009620 GO:0009628 GO:0009987 GO:0010029 GO:0010035 GO:0010038 GO:0010118 GO:0010187 GO:0012505 GO:0016020 GO:0019899 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050832 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0070013 GO:0071944 GO:0090332 GO:0098542 GO:0098588 GO:0098805 GO:1900140 GO:1990904 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

383

Amino Acids

42.54

Weight (kDa)

9.09

Isoelectric Point (pI)

33.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	72
AccB1I	GGYRCC	1 cut(s)	72
AccB7I	CCANNNNNTGG	1 cut(s)	58
AccI	GTMKAC	1 cut(s)	1140
AccII	CGCG	4 cut(s)	176, 181, 369, 678
AciI	CCGC	3 cut(s)	291, 639, 828
AclWI	GGATC	2 cut(s)	138, 892
AcoI	YGGCCR	1 cut(s)	436
AcsI	RAATTY	2 cut(s)	524, 894
AfaI	GTAC	3 cut(s)	74, 732, 1085
AfiI	CCNNNNNNNGG	2 cut(s)	58, 314
AgsI	TTSAA	3 cut(s)	571, 657, 745
AjnI	CCWGG	1 cut(s)	1098
AluBI	AGCT	4 cut(s)	241, 311, 833, 943
AluI	AGCT	4 cut(s)	241, 311, 833, 943
AlwI	GGATC	2 cut(s)	138, 892
AoxI	GGCC	3 cut(s)	436, 563, 690
ApeKI	GCWGC	5 cut(s)	238, 455, 830, 986, 998
ApoI	RAATTY	2 cut(s)	524, 894
Asp718I	GGTACC	1 cut(s)	72
AspLEI	GCGC	1 cut(s)	678
AspS9I	GGNCC	2 cut(s)	305, 1096
AsuHPI	GGTGA	7 cut(s)	46, 73, 210, 305, 461, 463, 793
AvaII	GGWCC	2 cut(s)	305, 1096
BanI	GGYRCC	1 cut(s)	72
BbvCI	CCTCAGC	1 cut(s)	642
BbvI	GCAGC	5 cut(s)	250, 442, 842, 973, 985
BccI	CCATC	4 cut(s)	52, 229, 418, 482
BceAI	ACGGC	1 cut(s)	423
BcgI	CGANNNNNNTGC	6 cut(s)	307, 341, 347, 381, 956, 990
BciT130I	CCWGG	1 cut(s)	1100
BclI	TGATCA	3 cut(s)	388, 606, 1059
BfaI	CTAG	3 cut(s)	273, 891, 1038
BfmI	CTRYAG	1 cut(s)	999
BglI	GCCNNNNNGGC	1 cut(s)	995
BglII	AGATCT	2 cut(s)	28, 269
BisI	GCNGC	7 cut(s)	239, 456, 639, 828, 831, 987, 999
BlpI	GCTNAGC	2 cut(s)	256, 1125
BlsI	GCNGC	7 cut(s)	240, 457, 640, 829, 832, 988, 1000
Bme1390I	CCNGG	1 cut(s)	1100
Bme18I	GGWCC	2 cut(s)	305, 1096
BmgT120I	GGNCC	2 cut(s)	305, 1096
BmiI	GGNNCC	2 cut(s)	74, 306
BmrFI	CCNGG	1 cut(s)	1100
BmsI	GCATC	9 cut(s)	327, 442, 490, 523, 663, 763, 792, 963, 1026
BpmI	CTGGAG	1 cut(s)	173
Bpu10I	CCTNAGC	2 cut(s)	135, 642
Bpu1102I	GCTNAGC	2 cut(s)	256, 1125
BpuEI	CTTGAG	1 cut(s)	869
Bsa29I	ATCGAT	1 cut(s)	321
BsaBI	GATNNNNATC	1 cut(s)	605
BsaJI	CCNNGG	2 cut(s)	76, 900
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 314
Bse1I	ACTGG	1 cut(s)	156
Bse8I	GATNNNNATC	1 cut(s)	605
BseBI	CCWGG	1 cut(s)	1100
BseCI	ATCGAT	1 cut(s)	321
BseDI	CCNNGG	2 cut(s)	76, 900
BseJI	GATNNNNATC	1 cut(s)	605
BseLI	CCNNNNNNNGG	2 cut(s)	58, 314
BseMII	CTCAG	2 cut(s)	270, 633
BseNI	ACTGG	1 cut(s)	156
BseRI	GAGGAG	1 cut(s)	659
BseXI	GCAGC	5 cut(s)	250, 442, 842, 973, 985
BseYI	CCCAGC	1 cut(s)	776
Bsh1236I	CGCG	4 cut(s)	176, 181, 369, 678
Bsh1285I	CGRYCG	1 cut(s)	367
BshFI	GGCC	3 cut(s)	438, 565, 692
BshNI	GGYRCC	1 cut(s)	72
BshVI	ATCGAT	1 cut(s)	321
BsiEI	CGRYCG	1 cut(s)	367
BslFI	GGGAC	2 cut(s)	70, 918
BslI	CCNNNNNNNGG	2 cut(s)	58, 314
BsmFI	GGGAC	2 cut(s)	70, 918
BsnI	GGCC	3 cut(s)	438, 565, 692
Bsp1720I	GCTNAGC	2 cut(s)	256, 1125
BspACI	CCGC	3 cut(s)	291, 639, 828
BspANI	GGCC	3 cut(s)	438, 565, 692
BspCNI	CTCAG	2 cut(s)	269, 634
BspDI	ATCGAT	1 cut(s)	321
BspFNI	CGCG	4 cut(s)	176, 181, 369, 678
BspLI	GGNNCC	2 cut(s)	74, 306
BspMAI	CTGCAG	1 cut(s)	1003
BspPI	GGATC	2 cut(s)	138, 892
BspT107I	GGYRCC	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	156
BssECI	CCNNGG	2 cut(s)	76, 900
BssT1I	CCWWGG	2 cut(s)	76, 900
Bst2UI	CCWGG	1 cut(s)	1100
Bst4CI	ACNGT	2 cut(s)	493, 730
Bst6I	CTCTTC	1 cut(s)	1019
BstAPI	GCANNNNNTGC	2 cut(s)	836, 983
BstC8I	GCNNGC	2 cut(s)	790, 1131
BstDEI	CTNAG	4 cut(s)	135, 256, 642, 1125
BstFNI	CGCG	4 cut(s)	176, 181, 369, 678
BstHHI	GCGC	1 cut(s)	678
BstMCI	CGRYCG	1 cut(s)	367
BstMWI	GCNNNNNNNGC	7 cut(s)	47, 252, 297, 836, 983, 995, 1130
BstNI	CCWGG	1 cut(s)	1100
BstNSI	RCATGY	1 cut(s)	540
BstSCI	CCNGG	1 cut(s)	1098
BstSFI	CTRYAG	1 cut(s)	999
BstUI	CGCG	4 cut(s)	176, 181, 369, 678
BstV1I	GCAGC	5 cut(s)	250, 442, 842, 973, 985
BstX2I	RGATCY	4 cut(s)	28, 143, 269, 884
BstYI	RGATCY	4 cut(s)	28, 143, 269, 884
Bsu15I	ATCGAT	1 cut(s)	321
BsuRI	GGCC	3 cut(s)	438, 565, 692
BsuTUI	ATCGAT	1 cut(s)	321
BtgZI	GCGATG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	489
Cac8I	GCNNGC	2 cut(s)	790, 1131
CfoI	GCGC	1 cut(s)	678
Cfr13I	GGNCC	2 cut(s)	305, 1096
ClaI	ATCGAT	1 cut(s)	321
CseI	GACGC	2 cut(s)	165, 170
Csp6I	GTAC	3 cut(s)	73, 731, 1084
CspCI	CAANNNNNGTGG	2 cut(s)	559, 594
CviAII	CATG	7 cut(s)	115, 160, 234, 342, 537, 793, 1057
CviQI	GTAC	3 cut(s)	73, 731, 1084
DdeI	CTNAG	4 cut(s)	135, 256, 642, 1125
EaeI	YGGCCR	1 cut(s)	436
Eam1104I	CTCTTC	1 cut(s)	1019
EarI	CTCTTC	1 cut(s)	1019
Eco130I	CCWWGG	2 cut(s)	76, 900
Eco147I	AGGCCT	1 cut(s)	692
Eco32I	GATATC	1 cut(s)	651
Eco47I	GGWCC	2 cut(s)	305, 1096
EcoRI	GAATTC	1 cut(s)	894
EcoRII	CCWGG	1 cut(s)	1098
EcoRV	GATATC	1 cut(s)	651
EcoT14I	CCWWGG	2 cut(s)	76, 900
EcoT22I	ATGCAT	1 cut(s)	538
ErhI	CCWWGG	2 cut(s)	76, 900
FaeI	CATG	7 cut(s)	118, 163, 237, 345, 540, 796, 1060
FaqI	GGGAC	2 cut(s)	70, 918
FatI	CATG	7 cut(s)	114, 159, 233, 341, 536, 792, 1056
FauNDI	CATATG	2 cut(s)	841, 979
FbaI	TGATCA	3 cut(s)	388, 606, 1059
FblI	GTMKAC	1 cut(s)	1140
Fnu4HI	GCNGC	7 cut(s)	239, 456, 639, 828, 831, 987, 999
Fsp4HI	GCNGC	7 cut(s)	239, 456, 639, 828, 831, 987, 999
FspBI	CTAG	3 cut(s)	273, 891, 1038
GlaI	GCGC	1 cut(s)	677
GluI	GCNGC	7 cut(s)	239, 456, 639, 828, 831, 987, 999
GsaI	CCCAGC	1 cut(s)	780
GsuI	CTGGAG	1 cut(s)	173
HaeIII	GGCC	3 cut(s)	438, 565, 692
HgaI	GACGC	2 cut(s)	165, 170
HhaI	GCGC	1 cut(s)	678
Hin1II	CATG	7 cut(s)	118, 163, 237, 345, 540, 796, 1060
Hin6I	GCGC	1 cut(s)	676
HinP1I	GCGC	1 cut(s)	676
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HinfI	GANTC	1 cut(s)	749
HphI	GGTGA	7 cut(s)	46, 73, 210, 305, 461, 463, 793
Hpy166II	GTNNAC	2 cut(s)	589, 1141
Hpy188I	TCNGA	1 cut(s)	329
Hpy188III	TCNNGA	5 cut(s)	273, 848, 962, 1021, 1038
Hpy8I	GTNNAC	2 cut(s)	589, 1141
Hpy99I	CGWCG	1 cut(s)	181
HpyAV	CCTTC	3 cut(s)	31, 290, 1114
HpyCH4III	ACNGT	2 cut(s)	493, 730
HpyF10VI	GCNNNNNNNGC	7 cut(s)	47, 252, 297, 836, 983, 995, 1130
HpyF3I	CTNAG	4 cut(s)	135, 256, 642, 1125
Hsp92II	CATG	7 cut(s)	118, 163, 237, 345, 540, 796, 1060
HspAI	GCGC	1 cut(s)	676
KpnI	GGTACC	1 cut(s)	76
Ksp22I	TGATCA	3 cut(s)	388, 606, 1059
LmnI	GCTCC	1 cut(s)	940
Lsp1109I	GCAGC	5 cut(s)	250, 442, 842, 973, 985
LweI	GCATC	9 cut(s)	327, 442, 490, 523, 663, 763, 792, 963, 1026
MaeI	CTAG	3 cut(s)	273, 891, 1038
MaeIII	GTNAC	3 cut(s)	14, 125, 469
MboII	GAAGA	3 cut(s)	216, 645, 1036
MfeI	CAATTG	1 cut(s)	972
MflI	RGATCY	4 cut(s)	28, 143, 269, 884
MluCI	AATT	9 cut(s)	262, 524, 557, 632, 681, 855, 894, 972, 1047
MlyI	GAGTC	1 cut(s)	743
MmeI	TCCRAC	3 cut(s)	132, 147, 328
MnlI	CCTC	6 cut(s)	274, 295, 637, 682, 1020, 1087
Mph1103I	ATGCAT	1 cut(s)	538
MseI	TTAA	4 cut(s)	543, 725, 813, 930
MslI	CAYNNNNRTG	1 cut(s)	797
MspA1I	CMGCKG	1 cut(s)	641
MspR9I	CCNGG	1 cut(s)	1100
MunI	CAATTG	1 cut(s)	972
MvaI	CCWGG	1 cut(s)	1100
MvnI	CGCG	4 cut(s)	176, 181, 369, 678
MwoI	GCNNNNNNNGC	7 cut(s)	47, 252, 297, 836, 983, 995, 1130
NdeI	CATATG	2 cut(s)	841, 979
NlaIII	CATG	7 cut(s)	118, 163, 237, 345, 540, 796, 1060
NlaIV	GGNNCC	2 cut(s)	74, 306
NmuCI	GTSAC	2 cut(s)	125, 469
NsiI	ATGCAT	1 cut(s)	538
NspI	RCATGY	1 cut(s)	540
PceI	AGGCCT	1 cut(s)	692
PcsI	WCGNNNNNNNCGW	1 cut(s)	410
PflMI	CCANNNNNTGG	1 cut(s)	58
PkrI	GCNGC	7 cut(s)	240, 457, 640, 829, 832, 988, 1000
Ple19I	CGATCG	1 cut(s)	367
PleI	GAGTC	1 cut(s)	743
PpsI	GAGTC	1 cut(s)	743
Psp6I	CCWGG	1 cut(s)	1098
PspFI	CCCAGC	1 cut(s)	776
PspGI	CCWGG	1 cut(s)	1098
PspN4I	GGNNCC	2 cut(s)	74, 306
PspPI	GGNCC	2 cut(s)	305, 1096
PstI	CTGCAG	1 cut(s)	1003
PsuI	RGATCY	4 cut(s)	28, 143, 269, 884
PvuI	CGATCG	1 cut(s)	367
RsaI	GTAC	3 cut(s)	74, 732, 1085
RsaNI	GTAC	3 cut(s)	73, 731, 1084
RseI	CAYNNNNRTG	1 cut(s)	797
SaqAI	TTAA	4 cut(s)	543, 725, 813, 930
SatI	GCNGC	7 cut(s)	239, 456, 639, 828, 831, 987, 999
Sau96I	GGNCC	2 cut(s)	305, 1096
SchI	GAGTC	1 cut(s)	743
ScrFI	CCNGG	1 cut(s)	1100
SetI	ASST	7 cut(s)	74, 243, 313, 576, 835, 945, 1068
SfaNI	GCATC	9 cut(s)	327, 442, 490, 523, 663, 763, 792, 963, 1026
SfcI	CTRYAG	1 cut(s)	999
SinI	GGWCC	2 cut(s)	305, 1096
SmiMI	CAYNNNNRTG	1 cut(s)	797
SmlI	CTYRAG	1 cut(s)	848
SmoI	CTYRAG	1 cut(s)	848
Sse9I	AATT	9 cut(s)	262, 524, 557, 632, 681, 855, 894, 972, 1047
SseBI	AGGCCT	1 cut(s)	692
SsiI	CCGC	3 cut(s)	291, 639, 828
SspI	AATATT	1 cut(s)	433
SspMI	CTAG	3 cut(s)	273, 891, 1038
StuI	AGGCCT	1 cut(s)	692
StyD4I	CCNGG	1 cut(s)	1098
StyI	CCWWGG	2 cut(s)	76, 900
TaaI	ACNGT	2 cut(s)	493, 730
TaqI	TCGA	3 cut(s)	227, 321, 1020
TasI	AATT	9 cut(s)	262, 524, 557, 632, 681, 855, 894, 972, 1047
TatI	WGTACW	1 cut(s)	1083
TauI	GCSGC	2 cut(s)	641, 830
Tru1I	TTAA	4 cut(s)	543, 725, 813, 930
Tru9I	TTAA	4 cut(s)	543, 725, 813, 930
TscAI	CASTG	1 cut(s)	496
TseFI	GTSAC	2 cut(s)	125, 469
TseI	GCWGC	5 cut(s)	238, 455, 830, 986, 998
Tsp45I	GTSAC	2 cut(s)	125, 469
TspDTI	ATGAA	5 cut(s)	222, 330, 569, 636, 809
TspRI	CASTG	1 cut(s)	496
Van91I	CCANNNNNTGG	1 cut(s)	58
VpaK11BI	GGWCC	2 cut(s)	305, 1096
XapI	RAATTY	2 cut(s)	524, 894
XbaI	TCTAGA	2 cut(s)	272, 1037
XceI	RCATGY	1 cut(s)	540
XmiI	GTMKAC	1 cut(s)	1140
XspI	CTAG	3 cut(s)	273, 891, 1038
Zsp2I	ATGCAT	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.