Rmu_ssc0000087.1_g000046
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000087.1
N/A
Physical Location & Seq
Forward (+)
204297 .. 205568
1272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000087.1_g000046.1.cds

Sequence Viewer

Length: 570 bp
atgattgtggtcaagtataagaatgaaacgaaacaattagctccggaagagatatcatcaatggttctctataagatgcgtgaaatagtagaggtctatcttggatctgtagtaaagaatgcagttgtaaatgtcccagcatattttaatgactctcaaagacaagccacaaaggacgctggtttaattgtcggcatgaacgttatgcgtatcatcaatgagccaacagctgcggtaattgcatatggtcttgacaaaaaagtcactagcactagtgggaagaatgttctcatattcgatcttggtggtggtacctttgatgtttccattcttaaaattgaagatgagatttttgaagtgaaagctactactggagatacccatcttggaggtgaagattttgacaatagaatgagcccaggaaaaaaaaaaaagagcaagctttgtcgaccgagctctccctcctccggccacctcacgacgccagaagacttccctcgtgctttcctcgaccttgcgcagctgctagtggcagccttccgctgctgcacagccggtagtggcggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

189

Amino Acids

20.48

Weight (kDa)

7.66

Isoelectric Point (pI)

43.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 260
Acc16I TGCGCA 1 cut(s) 519
Acc65I GGTACC 1 cut(s) 311
AccB1I GGYRCC 1 cut(s) 311
AccI GTMKAC 1 cut(s) 448
AccIII TCCGGA 1 cut(s) 43
AciI CCGC 3 cut(s) 233, 541, 564
AclI AACGTT 1 cut(s) 201
AclWI GGATC 1 cut(s) 112
AcoI YGGCCR 1 cut(s) 469
AcyI GRCGYC 1 cut(s) 482
AfaI GTAC 1 cut(s) 313
AfiI CCNNNNNNNGG 1 cut(s) 467
AgsI TTSAA 2 cut(s) 341, 356
AhlI ACTAGT 1 cut(s) 272
AjnI CCWGG 1 cut(s) 418
AluBI AGCT 6 cut(s) 41, 230, 365, 442, 456, 523
AluI AGCT 6 cut(s) 41, 230, 365, 442, 456, 523
Alw21I GWGCWC 1 cut(s) 458
AlwI GGATC 1 cut(s) 112
Aor13HI TCCGGA 1 cut(s) 43
AoxI GGCC 1 cut(s) 469
ApeKI GCWGC 6 cut(s) 230, 520, 523, 533, 543, 546
Asp718I GGTACC 1 cut(s) 311
AspLEI GCGC 1 cut(s) 520
AsuHPI GGTGA 1 cut(s) 404
BanI GGYRCC 1 cut(s) 311
BanII GRGCYC 2 cut(s) 419, 458
BauI CACGAG 1 cut(s) 498
BbsI GAAGAC 1 cut(s) 495
Bbv12I GWGCWC 1 cut(s) 458
BbvI GCAGC 6 cut(s) 217, 510, 530, 532, 533, 545
BccI CCATC 1 cut(s) 390
BciT130I CCWGG 1 cut(s) 420
BcuI ACTAGT 1 cut(s) 272
BfaI CTAG 3 cut(s) 267, 273, 527
BfmI CTRYAG 1 cut(s) 108
BisI GCNGC 7 cut(s) 231, 521, 524, 534, 544, 547, 565
BlsI GCNGC 7 cut(s) 232, 522, 525, 535, 545, 548, 566
Bme1390I CCNGG 1 cut(s) 420
BmiI GGNNCC 1 cut(s) 313
BmrFI CCNGG 1 cut(s) 420
BmsI GCATC 1 cut(s) 66
BpiI GAAGAC 1 cut(s) 495
BpmI CTGGAG 1 cut(s) 393
BsaBI GATNNNNATC 1 cut(s) 381
BsaHI GRCGYC 1 cut(s) 482
BsaJI CCNNGG 1 cut(s) 418
BsaWI WCCGGW 1 cut(s) 43
Bsc4I CCNNNNNNNGG 1 cut(s) 467
Bse118I RCCGGY 1 cut(s) 554
Bse1I ACTGG 1 cut(s) 376
Bse8I GATNNNNATC 1 cut(s) 381
BseAI TCCGGA 1 cut(s) 43
BseBI CCWGG 1 cut(s) 420
BseDI CCNNGG 1 cut(s) 418
BseJI GATNNNNATC 1 cut(s) 381
BseLI CCNNNNNNNGG 1 cut(s) 467
BseNI ACTGG 1 cut(s) 376
BseRI GAGGAG 1 cut(s) 454
BseXI GCAGC 6 cut(s) 217, 510, 530, 532, 533, 545
BseYI CCCAGC 1 cut(s) 136
BsgI GTGCAG 1 cut(s) 532
Bsh1285I CGRYCG 1 cut(s) 452
BshFI GGCC 1 cut(s) 471
BshNI GGYRCC 1 cut(s) 311
BsiEI CGRYCG 1 cut(s) 452
BsiHKAI GWGCWC 1 cut(s) 458
BsiSI CCGG 3 cut(s) 44, 468, 555
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 467
BsmFI GGGAC 1 cut(s) 119
BsmI GAATGC 1 cut(s) 124
BsnI GGCC 1 cut(s) 471
Bsp1286I GDGCHC 2 cut(s) 419, 458
Bsp13I TCCGGA 1 cut(s) 43
Bsp143I GATC 2 cut(s) 104, 298
BspACI CCGC 3 cut(s) 233, 541, 564
BspANI GGCC 1 cut(s) 471
BspEI TCCGGA 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 313
BspPI GGATC 1 cut(s) 112
BspT107I GGYRCC 1 cut(s) 311
BsrFI RCCGGY 1 cut(s) 554
BsrI ACTGG 1 cut(s) 376
BssAI RCCGGY 1 cut(s) 554
BssECI CCNNGG 1 cut(s) 418
BssMI GATC 2 cut(s) 104, 298
BssNI GRCGYC 1 cut(s) 482
BssSI CACGAG 1 cut(s) 498
Bst2BI CACGAG 1 cut(s) 498
Bst2UI CCWGG 1 cut(s) 420
Bst6I CTCTTC 1 cut(s) 42
BstACI GRCGYC 1 cut(s) 482
BstC8I GCNNGC 1 cut(s) 440
BstHHI GCGC 1 cut(s) 520
BstKTI GATC 2 cut(s) 107, 301
BstMBI GATC 2 cut(s) 104, 298
BstMCI CGRYCG 1 cut(s) 452
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNI CCWGG 1 cut(s) 420
BstSCI CCNGG 1 cut(s) 418
BstSFI CTRYAG 1 cut(s) 108
BstV1I GCAGC 6 cut(s) 217, 510, 530, 532, 533, 545
BstV2I GAAGAC 1 cut(s) 495
BstX2I RGATCY 1 cut(s) 104
BstYI RGATCY 1 cut(s) 104
BsuRI GGCC 1 cut(s) 471
Cac8I GCNNGC 1 cut(s) 440
CfoI GCGC 1 cut(s) 520
Cfr10I RCCGGY 1 cut(s) 554
CseI GACGC 2 cut(s) 185, 490
Csp6I GTAC 1 cut(s) 312
CviAII CATG 1 cut(s) 196
CviQI GTAC 1 cut(s) 312
DpnI GATC 2 cut(s) 106, 300
DpnII GATC 2 cut(s) 104, 298
DrdI GACNNNNNNGTC 1 cut(s) 260
DseDI GACNNNNNNGTC 1 cut(s) 260
EaeI YGGCCR 1 cut(s) 469
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Ecl136II GAGCTC 1 cut(s) 456
Eco24I GRGCYC 2 cut(s) 419, 458
Eco32I GATATC 1 cut(s) 54
Eco53kI GAGCTC 1 cut(s) 456
EcoICRI GAGCTC 1 cut(s) 456
EcoRII CCWGG 1 cut(s) 418
EcoRV GATATC 1 cut(s) 54
EcoT38I GRGCYC 2 cut(s) 419, 458
FaeI CATG 1 cut(s) 199
FaiI YATR 8 cut(s) 18, 72, 142, 197, 206, 244, 246, 293
FaqI GGGAC 1 cut(s) 119
FatI CATG 1 cut(s) 195
FauNDI CATATG 1 cut(s) 244
FblI GTMKAC 1 cut(s) 448
Fnu4HI GCNGC 7 cut(s) 231, 521, 524, 534, 544, 547, 565
FriOI GRGCYC 2 cut(s) 419, 458
Fsp4HI GCNGC 7 cut(s) 231, 521, 524, 534, 544, 547, 565
FspBI CTAG 3 cut(s) 267, 273, 527
FspI TGCGCA 1 cut(s) 519
GlaI GCGC 1 cut(s) 519
GluI GCNGC 7 cut(s) 231, 521, 524, 534, 544, 547, 565
GsaI CCCAGC 1 cut(s) 140
GsuI CTGGAG 1 cut(s) 393
HaeIII GGCC 1 cut(s) 471
HapII CCGG 3 cut(s) 44, 468, 555
HgaI GACGC 2 cut(s) 185, 490
HhaI GCGC 1 cut(s) 520
Hin1I GRCGYC 1 cut(s) 482
Hin1II CATG 1 cut(s) 199
Hin6I GCGC 1 cut(s) 518
HinP1I GCGC 1 cut(s) 518
HincII GTYRAC 1 cut(s) 449
HindII GTYRAC 1 cut(s) 449
HindIII AAGCTT 1 cut(s) 440
HinfI GANTC 1 cut(s) 152
HpaII CCGG 3 cut(s) 44, 468, 555
HphI GGTGA 1 cut(s) 404
Hpy166II GTNNAC 1 cut(s) 449
Hpy188III TCNNGA 3 cut(s) 44, 251, 478
Hpy8I GTNNAC 1 cut(s) 449
Hpy99I CGWCG 1 cut(s) 484
HpyAV CCTTC 1 cut(s) 547
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 3 cut(s) 122, 242, 549
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpySE526I ACGT 1 cut(s) 201
Hsp92I GRCGYC 1 cut(s) 482
Hsp92II CATG 1 cut(s) 199
HspAI GCGC 1 cut(s) 518
Kpn2I TCCGGA 1 cut(s) 43
KpnI GGTACC 1 cut(s) 315
Kzo9I GATC 2 cut(s) 104, 298
LmnI GCTCC 1 cut(s) 46
LpnPI CCDG 8 cut(s) 57, 150, 165, 357, 405, 432, 481, 498
Lsp1109I GCAGC 6 cut(s) 217, 510, 530, 532, 533, 545
LweI GCATC 1 cut(s) 66
MaeI CTAG 3 cut(s) 267, 273, 527
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 1 cut(s) 262
MalI GATC 2 cut(s) 106, 300
MboI GATC 2 cut(s) 104, 298
MboII GAAGA 5 cut(s) 59, 292, 353, 407, 500
MflI RGATCY 1 cut(s) 104
MhlI GDGCHC 2 cut(s) 419, 458
MluCI AATT 4 cut(s) 35, 186, 237, 336
MlyI GAGTC 1 cut(s) 146
MnlI CCTC 7 cut(s) 85, 383, 472, 475, 485, 507, 518
MroI TCCGGA 1 cut(s) 43
MseI TTAA 3 cut(s) 147, 185, 333
MspA1I CMGCKG 3 cut(s) 230, 523, 543
MspI CCGG 3 cut(s) 44, 468, 555
MspR9I CCNGG 1 cut(s) 420
Mva1269I GAATGC 1 cut(s) 124
MvaI CCWGG 1 cut(s) 420
MwoI GCNNNNNNNGC 1 cut(s) 239
NdeI CATATG 1 cut(s) 244
NdeII GATC 2 cut(s) 104, 298
NlaIII CATG 1 cut(s) 199
NlaIV GGNNCC 1 cut(s) 313
NmuCI GTSAC 1 cut(s) 262
NsbI TGCGCA 1 cut(s) 519
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PctI GAATGC 1 cut(s) 124
PkrI GCNGC 7 cut(s) 232, 522, 525, 535, 545, 548, 566
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
Psp124BI GAGCTC 1 cut(s) 458
Psp1406I AACGTT 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 418
PspFI CCCAGC 1 cut(s) 136
PspGI CCWGG 1 cut(s) 418
PspN4I GGNNCC 1 cut(s) 313
PsuI RGATCY 1 cut(s) 104
PvuII CAGCTG 2 cut(s) 230, 523
RsaI GTAC 1 cut(s) 313
RsaNI GTAC 1 cut(s) 312
SacI GAGCTC 1 cut(s) 458
SalI GTCGAC 1 cut(s) 447
SaqAI TTAA 3 cut(s) 147, 185, 333
SatI GCNGC 7 cut(s) 231, 521, 524, 534, 544, 547, 565
Sau3AI GATC 2 cut(s) 104, 298
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 1 cut(s) 420
SduI GDGCHC 2 cut(s) 419, 458
SfaNI GCATC 1 cut(s) 66
SfcI CTRYAG 1 cut(s) 108
SpeI ACTAGT 1 cut(s) 272
Sse9I AATT 4 cut(s) 35, 186, 237, 336
SsiI CCGC 3 cut(s) 233, 541, 564
SspMI CTAG 3 cut(s) 267, 273, 527
SstI GAGCTC 1 cut(s) 458
StyD4I CCNGG 1 cut(s) 418
TaiI ACGT 1 cut(s) 204
TaqI TCGA 3 cut(s) 297, 448, 510
TaqII GACCGA 1 cut(s) 466
TasI AATT 4 cut(s) 35, 186, 237, 336
TauI GCSGC 1 cut(s) 567
Tru1I TTAA 3 cut(s) 147, 185, 333
Tru9I TTAA 3 cut(s) 147, 185, 333
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 6 cut(s) 230, 520, 523, 533, 543, 546
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 2 cut(s) 39, 212
XmiI GTMKAC 1 cut(s) 448
XspI CTAG 3 cut(s) 267, 273, 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.