Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000093.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

81048 .. 85524

Gene Structure 4477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

atggtcggcggatggaagccgattaaggacatcaacgacccacacgtgaaggagatcacggagttcacagtgttggagtacaagaaatcttggaagaagctggagtttcaaagcatggtgaatggagagactcaggttgtcgccggcaaaaactactggctcgtcatcgccgttaaggataacttagtgtcggccaaagctgatagtggttgtgggggtattggtgtagttgttagagatgataggggtatgagtattgcgactattgctcgaccttttgtacatgcacactcggctctggaagcggaggcttgtagagccaaggacggagtccgggggcatcccgggttagtttgcagtcgggtggactcgtcggctaccactttgcattcaaccttaatcgagcttgaagttttgggtaaggtcgctgcccagaccttcgacctcgatctccttggcctttgtcttcactgcaaactggtccaggatgcccctggcctccgtctggcaagaggcgcactgtcatcgactcctaatcgcagagaaatcctggatgtccgcacttttggggcagtgcggacattctcttctgaacggctccgtatatatatagaatcttactctgataatgagatctttaacttagcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

216

Amino Acids

23.67

Weight (kDa)

7.67

Isoelectric Point (pI)

35.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	3 - 63	3.3e-07	Cystatin domain
SQAPI	PF16845	8 - 61	3.6e-16	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	9, 305, 559, 577
AcoI	YGGCCR	1 cut(s)	192
AcvI	CACGTG	1 cut(s)	46
AfaI	GTAC	2 cut(s)	80, 282
AfiI	CCNNNNNNNGG	1 cut(s)	505
AflIII	ACRYGT	1 cut(s)	43
AgsI	TTSAA	3 cut(s)	110, 393, 410
AjnI	CCWGG	3 cut(s)	483, 493, 549
AluBI	AGCT	4 cut(s)	100, 200, 406, 647
AluI	AGCT	4 cut(s)	100, 200, 406, 647
Alw26I	GTCTC	1 cut(s)	122
Ama87I	CYCGRG	1 cut(s)	344
AoxI	GGCC	3 cut(s)	192, 457, 496
ApeKI	GCWGC	1 cut(s)	428
AspLEI	GCGC	1 cut(s)	518
AspS9I	GGNCC	1 cut(s)	481
AsuC2I	CCSGG	3 cut(s)	335, 345, 346
AsuHPI	GGTGA	1 cut(s)	130
AvaI	CYCGRG	1 cut(s)	344
AvaII	GGWCC	1 cut(s)	481
BbrPI	CACGTG	1 cut(s)	46
BbsI	GAAGAC	1 cut(s)	458
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	1 cut(s)	6
BceAI	ACGGC	2 cut(s)	155, 611
BcgI	CGANNNNNNTGC	2 cut(s)	507, 541
BciT130I	CCWGG	3 cut(s)	485, 495, 551
BcnI	CCSGG	3 cut(s)	335, 345, 346
BcoDI	GTCTC	1 cut(s)	122
BglII	AGATCT	1 cut(s)	633
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
Bme1390I	CCNGG	6 cut(s)	335, 345, 346, 485, 495, 551
Bme18I	GGWCC	1 cut(s)	481
BmeT110I	CYCGRG	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	481
BmiI	GGNNCC	1 cut(s)	599
BmrFI	CCNGG	6 cut(s)	335, 345, 346, 485, 495, 551
BmsI	GCATC	2 cut(s)	349, 478
BpiI	GAAGAC	1 cut(s)	458
BpmI	CTGGAG	1 cut(s)	122
BpuMI	CCSGG	3 cut(s)	335, 345, 346
BsaAI	YACGTR	1 cut(s)	46
BsaJI	CCNNGG	5 cut(s)	321, 334, 344, 454, 493
Bsc4I	CCNNNNNNNGG	1 cut(s)	505
Bse118I	RCCGGY	1 cut(s)	143
Bse1I	ACTGG	2 cut(s)	161, 483
BseBI	CCWGG	3 cut(s)	485, 495, 551
BseDI	CCNNGG	5 cut(s)	321, 334, 344, 454, 493
BseGI	GGATG	4 cut(s)	17, 340, 493, 559
BseLI	CCNNNNNNNGG	1 cut(s)	505
BseMII	CTCAG	1 cut(s)	146
BseNI	ACTGG	2 cut(s)	161, 483
BseXI	GCAGC	1 cut(s)	415
BshFI	GGCC	3 cut(s)	194, 459, 498
BsiHKCI	CYCGRG	1 cut(s)	344
BsiSI	CCGG	3 cut(s)	144, 334, 345
BslI	CCNNNNNNNGG	1 cut(s)	505
BsmAI	GTCTC	1 cut(s)	122
BsmI	GAATGC	1 cut(s)	388
BsnI	GGCC	3 cut(s)	194, 459, 498
BsoBI	CYCGRG	1 cut(s)	344
Bsp1407I	TGTACA	1 cut(s)	280
Bsp143I	GATC	3 cut(s)	54, 448, 633
BspACI	CCGC	4 cut(s)	9, 305, 559, 577
BspANI	GGCC	3 cut(s)	194, 459, 498
BspCNI	CTCAG	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	599
BsrFI	RCCGGY	1 cut(s)	143
BsrGI	TGTACA	1 cut(s)	280
BsrI	ACTGG	2 cut(s)	161, 483
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	5 cut(s)	321, 334, 344, 454, 493
BssMI	GATC	3 cut(s)	54, 448, 633
BssT1I	CCWWGG	2 cut(s)	321, 454
Bst2UI	CCWGG	3 cut(s)	485, 495, 551
Bst4CI	ACNGT	2 cut(s)	70, 522
Bst6I	CTCTTC	1 cut(s)	592
BstAUI	TGTACA	1 cut(s)	280
BstBAI	YACGTR	1 cut(s)	46
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	3 cut(s)	132, 184, 643
BstF5I	GGATG	4 cut(s)	17, 340, 493, 559
BstHHI	GCGC	1 cut(s)	518
BstKTI	GATC	3 cut(s)	57, 451, 636
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	3 cut(s)	54, 448, 633
BstMWI	GCNNNNNNNGC	5 cut(s)	266, 293, 302, 317, 515
BstNI	CCWGG	3 cut(s)	485, 495, 551
BstNSI	RCATGY	1 cut(s)	287
BstSCI	CCNGG	6 cut(s)	333, 343, 344, 483, 493, 549
BstV1I	GCAGC	1 cut(s)	415
BstV2I	GAAGAC	1 cut(s)	458
BstX2I	RGATCY	1 cut(s)	633
BstYI	RGATCY	1 cut(s)	633
BsuRI	GGCC	3 cut(s)	194, 459, 498
BtgZI	GCGATG	1 cut(s)	151
BtsCI	GGATG	4 cut(s)	17, 340, 493, 559
BtsI	GCAGTG	2 cut(s)	469, 579
BtsIMutI	CAGTG	4 cut(s)	75, 469, 518, 579
Cac8I	GCNNGC	1 cut(s)	145
CfoI	GCGC	1 cut(s)	518
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	481
Cfr9I	CCCGGG	1 cut(s)	344
Csp6I	GTAC	2 cut(s)	79, 281
CviAII	CATG	2 cut(s)	115, 284
CviQI	GTAC	2 cut(s)	79, 281
DdeI	CTNAG	3 cut(s)	132, 184, 643
DpnI	GATC	3 cut(s)	56, 450, 635
DpnII	GATC	3 cut(s)	54, 448, 633
EaeI	YGGCCR	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	592
EarI	CTCTTC	1 cut(s)	592
EciI	GGCGGA	1 cut(s)	24
Eco130I	CCWWGG	2 cut(s)	321, 454
Eco47I	GGWCC	1 cut(s)	481
Eco72I	CACGTG	1 cut(s)	46
Eco88I	CYCGRG	1 cut(s)	344
EcoRII	CCWGG	3 cut(s)	483, 493, 549
EcoT14I	CCWWGG	2 cut(s)	321, 454
ErhI	CCWWGG	2 cut(s)	321, 454
FaeI	CATG	2 cut(s)	118, 287
FaiI	YATR	7 cut(s)	116, 251, 285, 605, 607, 609, 611
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FatI	CATG	2 cut(s)	114, 283
Fnu4HI	GCNGC	1 cut(s)	429
FokI	GGATG	4 cut(s)	24, 327, 500, 566
Fsp4HI	GCNGC	1 cut(s)	429
GlaI	GCGC	1 cut(s)	517
GluI	GCNGC	1 cut(s)	429
GsuI	CTGGAG	1 cut(s)	122
HaeIII	GGCC	3 cut(s)	194, 459, 498
HapII	CCGG	3 cut(s)	144, 334, 345
HhaI	GCGC	1 cut(s)	518
Hin1II	CATG	2 cut(s)	118, 287
Hin6I	GCGC	1 cut(s)	516
HinP1I	GCGC	1 cut(s)	516
HinfI	GANTC	5 cut(s)	130, 330, 368, 529, 614
HpaII	CCGG	3 cut(s)	144, 334, 345
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	2 cut(s)	66, 367
Hpy188I	TCNGA	2 cut(s)	592, 625
Hpy188III	TCNNGA	1 cut(s)	299
Hpy8I	GTNNAC	2 cut(s)	66, 367
Hpy99I	CGWCG	1 cut(s)	376
HpyAV	CCTTC	2 cut(s)	43, 448
HpyCH4III	ACNGT	2 cut(s)	70, 522
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	4 cut(s)	287, 357, 388, 474
HpyF10VI	GCNNNNNNNGC	5 cut(s)	266, 293, 302, 317, 515
HpyF3I	CTNAG	3 cut(s)	132, 184, 643
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	2 cut(s)	118, 287
HspAI	GCGC	1 cut(s)	516
KroI	GCCGGC	1 cut(s)	143
KroNI	GCCGGC	1 cut(s)	145
Kzo9I	GATC	3 cut(s)	54, 448, 633
LmnI	GCTCC	1 cut(s)	603
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	2 cut(s)	349, 478
MaeII	ACGT	1 cut(s)	45
MalI	GATC	3 cut(s)	56, 450, 635
MboI	GATC	3 cut(s)	54, 448, 633
MboII	GAAGA	3 cut(s)	106, 458, 579
MflI	RGATCY	1 cut(s)	633
MlyI	GAGTC	4 cut(s)	124, 339, 362, 523
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	4 cut(s)	301, 455, 506, 509
MroNI	GCCGGC	1 cut(s)	143
MseI	TTAA	5 cut(s)	24, 174, 398, 639, 649
MspI	CCGG	3 cut(s)	144, 334, 345
MspR9I	CCNGG	6 cut(s)	335, 345, 346, 485, 495, 551
Mva1269I	GAATGC	1 cut(s)	388
MvaI	CCWGG	3 cut(s)	485, 495, 551
MwoI	GCNNNNNNNGC	5 cut(s)	266, 293, 302, 317, 515
NaeI	GCCGGC	1 cut(s)	145
NciI	CCSGG	3 cut(s)	335, 345, 346
NdeII	GATC	3 cut(s)	54, 448, 633
NgoMIV	GCCGGC	1 cut(s)	143
NlaIII	CATG	2 cut(s)	118, 287
NlaIV	GGNNCC	1 cut(s)	599
NmeAIII	GCCGAG	1 cut(s)	272
NspI	RCATGY	1 cut(s)	287
PcsI	WCGNNNNNNNCGW	2 cut(s)	42, 168
PctI	GAATGC	1 cut(s)	388
PdiI	GCCGGC	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	614
PflFI	GACNNNGTC	1 cut(s)	329
PfoI	TCCNGGA	2 cut(s)	483, 549
PkrI	GCNGC	1 cut(s)	430
PleI	GAGTC	4 cut(s)	124, 338, 362, 523
PmaCI	CACGTG	1 cut(s)	46
PmlI	CACGTG	1 cut(s)	46
PpsI	GAGTC	4 cut(s)	124, 338, 362, 523
Ppu21I	YACGTR	1 cut(s)	46
Psp6I	CCWGG	3 cut(s)	483, 493, 549
PspCI	CACGTG	1 cut(s)	46
PspGI	CCWGG	3 cut(s)	483, 493, 549
PspN4I	GGNNCC	1 cut(s)	599
PspPI	GGNCC	1 cut(s)	481
PsuI	RGATCY	1 cut(s)	633
PsyI	GACNNNGTC	1 cut(s)	329
RsaI	GTAC	2 cut(s)	80, 282
RsaNI	GTAC	2 cut(s)	79, 281
SaqAI	TTAA	5 cut(s)	24, 174, 398, 639, 649
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	3 cut(s)	54, 448, 633
Sau96I	GGNCC	1 cut(s)	481
SchI	GAGTC	4 cut(s)	124, 339, 362, 523
ScrFI	CCNGG	6 cut(s)	335, 345, 346, 485, 495, 551
SfaNI	GCATC	2 cut(s)	349, 478
SinI	GGWCC	1 cut(s)	481
SmaI	CCCGGG	1 cut(s)	346
SsiI	CCGC	4 cut(s)	9, 305, 559, 577
StyD4I	CCNGG	6 cut(s)	333, 343, 344, 483, 493, 549
StyI	CCWWGG	2 cut(s)	321, 454
TaaI	ACNGT	2 cut(s)	70, 522
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	5 cut(s)	271, 402, 441, 447, 527
TatI	WGTACW	2 cut(s)	78, 280
TfiI	GAWTC	1 cut(s)	614
Tru1I	TTAA	5 cut(s)	24, 174, 398, 639, 649
Tru9I	TTAA	5 cut(s)	24, 174, 398, 639, 649
TscAI	CASTG	4 cut(s)	75, 476, 525, 579
TseI	GCWGC	1 cut(s)	428
TspGWI	ACGGA	4 cut(s)	74, 342, 491, 590
TspMI	CCCGGG	1 cut(s)	344
TspRI	CASTG	4 cut(s)	75, 476, 525, 579
Tth111I	GACNNNGTC	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	481
XceI	RCATGY	1 cut(s)	287
XcmI	CCANNNNNNNNNTGG	1 cut(s)	491
XmaI	CCCGGG	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.