Rmu_ssc0000100.1_g000010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000100.1
N/A
Physical Location & Seq
Forward (+)
33832 .. 36279
2448 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 429 bp
atggcgttttgtaagcagtctagtggtgtgaagacacagcgggagtttcgaggttctctattgcaaccctattcacctttctctcacggtacctgtacgctatcggtcattgaggaatacttaggcttagagggtggtcctcctttctcgcttaaaagcgataagaattcgaacacgcagcgttttactaggaaggatcaaacaatgggaacgaatctgcagggctatcaccttctttggccagatcttccaaccttttcacaattacagttcactgtgccgttgacctacacgaatggtgtaactactgccccgctgtctccgacatggacccgctctgcgggaaatccttctctatacaagttctcgaaagatccgatttcaagcgatacctttggtctaaactatcagaatcttggttccccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.75

Weight (kDa)

8.95

Isoelectric Point (pI)

46.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 89
AccB1I GGYRCC 1 cut(s) 89
AccBSI CCGCTC 1 cut(s) 336
AciI CCGC 4 cut(s) 40, 314, 334, 341
AclWI GGATC 2 cut(s) 204, 368
AcoI YGGCCR 1 cut(s) 239
AcsI RAATTY 1 cut(s) 166
AfaI GTAC 2 cut(s) 91, 97
AfiI CCNNNNNNNGG 1 cut(s) 340
AgsI TTSAA 1 cut(s) 384
Alw26I GTCTC 1 cut(s) 324
AlwI GGATC 2 cut(s) 204, 368
AoxI GGCC 1 cut(s) 239
ApeKI GCWGC 1 cut(s) 178
ApoI RAATTY 1 cut(s) 166
Asp700I GAANNNNTTC 1 cut(s) 349
Asp718I GGTACC 1 cut(s) 89
AspS9I GGNCC 2 cut(s) 137, 330
AsuHPI GGTGA 2 cut(s) 66, 221
AsuII TTCGAA 1 cut(s) 170
AvaII GGWCC 2 cut(s) 137, 330
BalI TGGCCA 1 cut(s) 241
BanI GGYRCC 1 cut(s) 89
BbsI GAAGAC 1 cut(s) 38
BbvI GCAGC 1 cut(s) 190
BceAI ACGGC 1 cut(s) 265
BcoDI GTCTC 1 cut(s) 324
BfaI CTAG 2 cut(s) 21, 189
BfmI CTRYAG 1 cut(s) 218
BglII AGATCT 1 cut(s) 244
BisI GCNGC 1 cut(s) 179
BlsI GCNGC 1 cut(s) 180
Bme18I GGWCC 2 cut(s) 137, 330
BmgT120I GGNCC 2 cut(s) 137, 330
BmiI GGNNCC 3 cut(s) 91, 332, 421
BpiI GAAGAC 1 cut(s) 38
Bpu14I TTCGAA 1 cut(s) 170
Bsc4I CCNNNNNNNGG 1 cut(s) 340
BseLI CCNNNNNNNGG 1 cut(s) 340
BseXI GCAGC 1 cut(s) 190
BshFI GGCC 1 cut(s) 241
BshNI GGYRCC 1 cut(s) 89
BslI CCNNNNNNNGG 1 cut(s) 340
BsmAI GTCTC 1 cut(s) 324
BsnI GGCC 1 cut(s) 241
Bsp119I TTCGAA 1 cut(s) 170
Bsp143I GATC 3 cut(s) 196, 244, 373
BspACI CCGC 4 cut(s) 40, 314, 334, 341
BspANI GGCC 1 cut(s) 241
BspLI GGNNCC 3 cut(s) 91, 332, 421
BspMAI CTGCAG 1 cut(s) 222
BspPI GGATC 2 cut(s) 204, 368
BspT104I TTCGAA 1 cut(s) 170
BspT107I GGYRCC 1 cut(s) 89
BsrBI CCGCTC 1 cut(s) 336
BssMI GATC 3 cut(s) 196, 244, 373
Bst4CI ACNGT 3 cut(s) 89, 270, 277
BstBI TTCGAA 1 cut(s) 170
BstDEI CTNAG 2 cut(s) 121, 127
BstKTI GATC 3 cut(s) 199, 247, 376
BstMAI GTCTC 1 cut(s) 324
BstMBI GATC 3 cut(s) 196, 244, 373
BstSFI CTRYAG 1 cut(s) 218
BstV1I GCAGC 1 cut(s) 190
BstV2I GAAGAC 1 cut(s) 38
BstX2I RGATCY 2 cut(s) 244, 373
BstYI RGATCY 2 cut(s) 244, 373
BsuRI GGCC 1 cut(s) 241
BtsIMutI CAGTG 1 cut(s) 273
Cfr13I GGNCC 2 cut(s) 137, 330
Csp6I GTAC 2 cut(s) 90, 96
CviAII CATG 2 cut(s) 327, 426
CviJI RGCY 3 cut(s) 126, 225, 241
CviKI_1 RGCY 3 cut(s) 126, 225, 241
CviQI GTAC 2 cut(s) 90, 96
DdeI CTNAG 2 cut(s) 121, 127
DpnI GATC 3 cut(s) 198, 246, 375
DpnII GATC 3 cut(s) 196, 244, 373
EaeI YGGCCR 1 cut(s) 239
Eco47I GGWCC 2 cut(s) 137, 330
EcoRI GAATTC 1 cut(s) 166
FaeI CATG 2 cut(s) 330, 429
FaiI YATR 3 cut(s) 328, 358, 427
FatI CATG 2 cut(s) 326, 425
FauI CCCGC 4 cut(s) 33, 321, 334, 341
Fnu4HI GCNGC 1 cut(s) 179
Fsp4HI GCNGC 1 cut(s) 179
FspBI CTAG 2 cut(s) 21, 189
GluI GCNGC 1 cut(s) 179
HaeIII GGCC 1 cut(s) 241
Hin1II CATG 2 cut(s) 330, 429
HincII GTYRAC 1 cut(s) 285
HindII GTYRAC 1 cut(s) 285
HinfI GANTC 2 cut(s) 214, 412
HphI GGTGA 2 cut(s) 66, 221
Hpy166II GTNNAC 2 cut(s) 273, 285
Hpy188I TCNGA 3 cut(s) 324, 378, 411
Hpy188III TCNNGA 1 cut(s) 367
Hpy8I GTNNAC 2 cut(s) 273, 285
HpyAV CCTTC 3 cut(s) 187, 242, 360
HpyCH4III ACNGT 3 cut(s) 89, 270, 277
HpyCH4V TGCA 2 cut(s) 64, 220
HpyF3I CTNAG 2 cut(s) 121, 127
Hsp92II CATG 2 cut(s) 330, 429
KpnI GGTACC 1 cut(s) 93
Kzo9I GATC 3 cut(s) 196, 244, 373
LpnPI CCDG 3 cut(s) 106, 206, 255
Lsp1109I GCAGC 1 cut(s) 190
MaeI CTAG 2 cut(s) 21, 189
MaeIII GTNAC 1 cut(s) 301
MalI GATC 3 cut(s) 198, 246, 375
MbiI CCGCTC 1 cut(s) 336
MboI GATC 3 cut(s) 196, 244, 373
MboII GAAGA 2 cut(s) 43, 239
MflI RGATCY 2 cut(s) 244, 373
MlsI TGGCCA 1 cut(s) 241
MluCI AATT 2 cut(s) 166, 263
MluNI TGGCCA 1 cut(s) 241
MmeI TCCRAC 2 cut(s) 275, 347
MnlI CCTC 4 cut(s) 44, 106, 124, 150
Mox20I TGGCCA 1 cut(s) 241
MroXI GAANNNNTTC 1 cut(s) 349
MscI TGGCCA 1 cut(s) 241
MseI TTAA 1 cut(s) 153
Msp20I TGGCCA 1 cut(s) 241
MspA1I CMGCKG 2 cut(s) 40, 316
NdeII GATC 3 cut(s) 196, 244, 373
NlaIII CATG 2 cut(s) 330, 429
NlaIV GGNNCC 3 cut(s) 91, 332, 421
NspV TTCGAA 1 cut(s) 170
PcsI WCGNNNNNNNCGW 1 cut(s) 374
PdmI GAANNNNTTC 1 cut(s) 349
PfeI GAWTC 2 cut(s) 214, 412
PkrI GCNGC 1 cut(s) 180
PspN4I GGNNCC 3 cut(s) 91, 332, 421
PspPI GGNCC 2 cut(s) 137, 330
PstI CTGCAG 1 cut(s) 222
PsuI RGATCY 2 cut(s) 244, 373
RsaI GTAC 2 cut(s) 91, 97
RsaNI GTAC 2 cut(s) 90, 96
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 1 cut(s) 179
Sau3AI GATC 3 cut(s) 196, 244, 373
Sau96I GGNCC 2 cut(s) 137, 330
SetI ASST 7 cut(s) 55, 79, 95, 234, 257, 290, 395
SfcI CTRYAG 1 cut(s) 218
SfuI TTCGAA 1 cut(s) 170
SinI GGWCC 2 cut(s) 137, 330
Sse9I AATT 2 cut(s) 166, 263
SsiI CCGC 4 cut(s) 40, 314, 334, 341
SspMI CTAG 2 cut(s) 21, 189
TaaI ACNGT 3 cut(s) 89, 270, 277
TaqI TCGA 3 cut(s) 49, 170, 368
TaqII GACCGA 1 cut(s) 94
TasI AATT 2 cut(s) 166, 263
TfiI GAWTC 2 cut(s) 214, 412
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 1 cut(s) 280
TseI GCWGC 1 cut(s) 178
TspRI CASTG 1 cut(s) 280
VpaK11BI GGWCC 2 cut(s) 137, 330
XapI RAATTY 1 cut(s) 166
XmnI GAANNNNTTC 1 cut(s) 349
XspI CTAG 2 cut(s) 21, 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.