Rmu_ssc0000101.1_g000001

Belongs to the PI3 PI4-kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000101.1
N/A
Physical Location & Seq
Forward (+)
1 .. 443
443 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 286 bp
ccagtactatacaaggttcaagtcctactgttgtgaagcatacaacattattcggaaatctagtaacctgatcttgaatctttttcatctaatggcgggttccaacattcctgacatagcgtctgatcctgaaaaaggcatcctcaagctccaggagaaattccggttggacttagacgatgaagcctgcatacatttcttccaggacttgatcaatgagagtgttagtgcactgtttcctcaaatggttgagaccattcatcggtgggctcaatattggcgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000045 GO:0000407 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005777 GO:0005942 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006661 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006914 GO:0006950 GO:0006970 GO:0006996 GO:0007033 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009056 GO:0009058 GO:0009555 GO:0009628 GO:0009651 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016236 GO:0016301 GO:0016303 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019637 GO:0019898 GO:0022607 GO:0023052 GO:0030242 GO:0030258 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032991 GO:0034271 GO:0034272 GO:0035004 GO:0035032 GO:0035556 GO:0036092 GO:0036211 GO:0042579 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045017 GO:0046474 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0046907 GO:0048015 GO:0048017 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0052742 GO:0055046 GO:0061695 GO:0061919 GO:0065007 GO:0070925 GO:0071704 GO:0071840 GO:0072593 GO:0090407 GO:0097708 GO:0098657 GO:0098796 GO:1901564 GO:1901576 GO:1902494 GO:1905037 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00562 ko01100 ko04070 ko04136 ko04138 ko04140 ko04145 ko04371 ko05152 ko05167 map00562 map01100 map04070 map04136 map04138 map04140 map04145 map04371 map05152 map05167
Pfam Domains
Protein Families
PI3K_C2 PI3Ka PI3_PI4_kinase

Protein Analysis

94

Amino Acids

11.16

Weight (kDa)

5.86

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI3_PI4_kinase PF00454 2 - 40 3.4e-06 Phosphatidylinositol 3- and 4-kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 96
AclWI GGATC 1 cut(s) 120
AcsI RAATTY 1 cut(s) 159
AfaI GTAC 1 cut(s) 6
AfiI CCNNNNNNNGG 2 cut(s) 135, 262
AgsI TTSAA 2 cut(s) 20, 77
AhdI GACNNNNNGTC 1 cut(s) 119
AjnI CCWGG 2 cut(s) 151, 202
AjuI GAANNNNNNNTTGG 2 cut(s) 150, 182
AluBI AGCT 1 cut(s) 149
AluI AGCT 1 cut(s) 149
Alw21I GWGCWC 1 cut(s) 233
Alw26I GTCTC 1 cut(s) 246
Alw44I GTGCAC 1 cut(s) 229
AlwI GGATC 1 cut(s) 120
ApaLI GTGCAC 1 cut(s) 229
ApoI RAATTY 1 cut(s) 159
AspLEI GCGC 1 cut(s) 283
BaeGI GKGCMC 1 cut(s) 233
BanII GRGCYC 1 cut(s) 272
BarI GAAGNNNNNNTAC 2 cut(s) 175, 207
Bbv12I GWGCWC 1 cut(s) 233
BciT130I CCWGG 2 cut(s) 153, 204
BclI TGATCA 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 246
BfaI CTAG 1 cut(s) 61
BfoI RGCGCY 1 cut(s) 284
BmcAI AGTACT 1 cut(s) 6
Bme1390I CCNGG 2 cut(s) 153, 204
BmeRI GACNNNNNGTC 1 cut(s) 119
BmiI GGNNCC 1 cut(s) 101
BmrFI CCNGG 2 cut(s) 153, 204
BmsI GCATC 1 cut(s) 148
BpmI CTGGAG 1 cut(s) 135
BpuEI CTTGAG 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 246
BsaWI WCCGGW 1 cut(s) 163
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 262
BseBI CCWGG 2 cut(s) 153, 204
BseGI GGATG 1 cut(s) 139
BseLI CCNNNNNNNGG 2 cut(s) 135, 262
BseSI GKGCMC 1 cut(s) 233
BsiHKAI GWGCWC 1 cut(s) 233
BsiSI CCGG 1 cut(s) 164
BslI CCNNNNNNNGG 2 cut(s) 135, 262
BsmAI GTCTC 1 cut(s) 246
Bso31I GGTCTC 1 cut(s) 246
Bsp1286I GDGCHC 2 cut(s) 233, 272
Bsp143I GATC 3 cut(s) 70, 125, 211
BspACI CCGC 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 101
BspPI GGATC 1 cut(s) 120
BspTNI GGTCTC 1 cut(s) 246
BssMI GATC 3 cut(s) 70, 125, 211
Bst2UI CCWGG 2 cut(s) 153, 204
Bst4CI ACNGT 2 cut(s) 30, 235
BstC8I GCNNGC 1 cut(s) 188
BstDEI CTNAG 1 cut(s) 173
BstENI CCTNNNNNAGG 1 cut(s) 133
BstF5I GGATG 1 cut(s) 139
BstH2I RGCGCY 1 cut(s) 284
BstHHI GCGC 1 cut(s) 283
BstKTI GATC 3 cut(s) 73, 128, 214
BstMAI GTCTC 1 cut(s) 246
BstMBI GATC 3 cut(s) 70, 125, 211
BstNI CCWGG 2 cut(s) 153, 204
BstSCI CCNGG 2 cut(s) 151, 202
BstSLI GKGCMC 1 cut(s) 233
BtsCI GGATG 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 231
Cac8I GCNNGC 1 cut(s) 188
CfoI GCGC 1 cut(s) 283
CseI GACGC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 5
CviJI RGCY 3 cut(s) 149, 186, 270
CviKI_1 RGCY 3 cut(s) 149, 186, 270
CviQI GTAC 1 cut(s) 5
DdeI CTNAG 1 cut(s) 173
DpnI GATC 3 cut(s) 72, 127, 213
DpnII GATC 3 cut(s) 70, 125, 211
DriI GACNNNNNGTC 1 cut(s) 119
Eam1105I GACNNNNNGTC 1 cut(s) 119
Eco24I GRGCYC 1 cut(s) 272
Eco31I GGTCTC 1 cut(s) 246
EcoNI CCTNNNNNAGG 1 cut(s) 133
EcoRII CCWGG 2 cut(s) 151, 202
EcoT38I GRGCYC 1 cut(s) 272
FaiI YATR 4 cut(s) 10, 41, 117, 192
FauI CCCGC 1 cut(s) 89
FbaI TGATCA 1 cut(s) 211
FokI GGATG 1 cut(s) 126
FriOI GRGCYC 1 cut(s) 272
FspBI CTAG 1 cut(s) 61
GlaI GCGC 1 cut(s) 282
GsuI CTGGAG 1 cut(s) 135
HaeII RGCGCY 1 cut(s) 284
HapII CCGG 1 cut(s) 164
HgaI GACGC 1 cut(s) 109
HhaI GCGC 1 cut(s) 283
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HinfI GANTC 1 cut(s) 77
HpaII CCGG 1 cut(s) 164
Hpy166II GTNNAC 1 cut(s) 231
Hpy188I TCNGA 2 cut(s) 55, 125
Hpy188III TCNNGA 3 cut(s) 74, 111, 129
Hpy8I GTNNAC 1 cut(s) 231
HpyCH4III ACNGT 2 cut(s) 30, 235
HpyCH4V TGCA 2 cut(s) 190, 231
HpyF3I CTNAG 1 cut(s) 173
HspAI GCGC 1 cut(s) 281
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 3 cut(s) 70, 125, 211
LmnI GCTCC 1 cut(s) 154
LweI GCATC 1 cut(s) 148
MaeI CTAG 1 cut(s) 61
MaeIII GTNAC 1 cut(s) 63
MalI GATC 3 cut(s) 72, 127, 213
MboI GATC 3 cut(s) 70, 125, 211
MboII GAAGA 1 cut(s) 191
MhlI GDGCHC 2 cut(s) 233, 272
MluCI AATT 1 cut(s) 159
MmeI TCCRAC 2 cut(s) 127, 148
MnlI CCTC 2 cut(s) 153, 250
MspI CCGG 1 cut(s) 164
MspR9I CCNGG 2 cut(s) 153, 204
MvaI CCWGG 2 cut(s) 153, 204
NdeII GATC 3 cut(s) 70, 125, 211
NlaIV GGNNCC 1 cut(s) 101
PfeI GAWTC 1 cut(s) 77
PfoI TCCNGGA 2 cut(s) 151, 202
Psp6I CCWGG 2 cut(s) 151, 202
PspGI CCWGG 2 cut(s) 151, 202
PspN4I GGNNCC 1 cut(s) 101
RsaI GTAC 1 cut(s) 6
RsaNI GTAC 1 cut(s) 5
Sau3AI GATC 3 cut(s) 70, 125, 211
ScaI AGTACT 1 cut(s) 6
ScrFI CCNGG 2 cut(s) 153, 204
SduI GDGCHC 2 cut(s) 233, 272
SetI ASST 3 cut(s) 18, 70, 151
SfaNI GCATC 1 cut(s) 148
SmlI CTYRAG 1 cut(s) 144
SmoI CTYRAG 1 cut(s) 144
Sse9I AATT 1 cut(s) 159
SsiI CCGC 1 cut(s) 96
SspI AATATT 1 cut(s) 276
SspMI CTAG 1 cut(s) 61
StyD4I CCNGG 2 cut(s) 151, 202
TaaI ACNGT 2 cut(s) 30, 235
TasI AATT 1 cut(s) 159
TatI WGTACW 1 cut(s) 4
TfiI GAWTC 1 cut(s) 77
TscAI CASTG 1 cut(s) 238
TspDTI ATGAA 3 cut(s) 75, 196, 249
TspRI CASTG 1 cut(s) 238
VneI GTGCAC 1 cut(s) 229
XagI CCTNNNNNAGG 1 cut(s) 133
XapI RAATTY 1 cut(s) 159
XspI CTAG 1 cut(s) 61
ZrmI AGTACT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.