Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000102.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4937 .. 7261

Gene Structure 2325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atgtcacccaatggcttgtacaatgggctggccttcctgctgcgaatgccacttgggaggaagctcacaccatcaagcaacgtttcccttcgttttgtgcctgaggacaggccacatctcaagggggagggacttgataacactttatctgcgagaaatcgtcgttttcttgaacctctggaggatgtgatagtgtattcccgtggttgtgccacctttgatcttccggttgatgttgccaaatctatgaaagatgttgtagcacatccccaggatctaatgcatcacataggcctttacatagccaaaggaaggggagcaaaggtcgtgtcagaagtgtcatttggtgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006206 GO:0006208 GO:0006212 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006766 GO:0006767 GO:0006769 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008936 GO:0009056 GO:0009058 GO:0009108 GO:0009112 GO:0009117 GO:0009165 GO:0009719 GO:0009725 GO:0009737 GO:0009820 GO:0009987 GO:0010033 GO:0016787 GO:0016810 GO:0016811 GO:0017144 GO:0018130 GO:0019362 GO:0019363 GO:0019365 GO:0019438 GO:0019637 GO:0019860 GO:0033993 GO:0034641 GO:0034654 GO:0042221 GO:0042737 GO:0043094 GO:0043173 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044424 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0072527 GO:0072529 GO:0090407 GO:0097305 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Isochorismatase

Protein Analysis

117

Amino Acids

12.87

Weight (kDa)

9.25

Isoelectric Point (pI)

49.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	81
AclWI	GGATC	1 cut(s)	282
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	1 cut(s)	312
AgsI	TTSAA	1 cut(s)	173
AjnI	CCWGG	1 cut(s)	270
AjuI	GAANNNNNNNTTGG	1 cut(s)	327
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
AlwI	GGATC	1 cut(s)	282
AoxI	GGCC	3 cut(s)	30, 110, 292
ApeKI	GCWGC	1 cut(s)	40
ArsI	GACNNNNNNTTYG	2 cut(s)	314, 346
AxyI	CCTNAGG	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	27
BccI	CCATC	1 cut(s)	79
BciT130I	CCWGG	1 cut(s)	272
BisI	GCNGC	1 cut(s)	41
BlsI	GCNGC	1 cut(s)	42
Bme1390I	CCNGG	1 cut(s)	272
BmrFI	CCNGG	1 cut(s)	272
BmsI	GCATC	1 cut(s)	292
BpmI	CTGGAG	1 cut(s)	200
BpuEI	CTTGAG	1 cut(s)	104
BsaJI	CCNNGG	2 cut(s)	202, 270
BsaWI	WCCGGW	1 cut(s)	226
BsaXI	ACNNNNNCTCC	2 cut(s)	309, 339
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse21I	CCTNAGG	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	272
BseDI	CCNNGG	2 cut(s)	202, 270
BseGI	GGATG	2 cut(s)	190, 265
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseMII	CTCAG	1 cut(s)	93
BseXI	GCAGC	1 cut(s)	27
BshFI	GGCC	3 cut(s)	32, 112, 294
BsiSI	CCGG	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmFI	GGGAC	1 cut(s)	144
BsmI	GAATGC	1 cut(s)	51
BsnI	GGCC	3 cut(s)	32, 112, 294
Bsp1407I	TGTACA	1 cut(s)	18
Bsp143I	GATC	2 cut(s)	220, 274
BspANI	GGCC	3 cut(s)	32, 112, 294
BspCNI	CTCAG	1 cut(s)	94
BspPI	GGATC	1 cut(s)	282
BsrGI	TGTACA	1 cut(s)	18
BssECI	CCNNGG	2 cut(s)	202, 270
BssMI	GATC	2 cut(s)	220, 274
Bst2UI	CCWGG	1 cut(s)	272
BstAUI	TGTACA	1 cut(s)	18
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	1 cut(s)	102
BstDSI	CCRYGG	1 cut(s)	202
BstF5I	GGATG	2 cut(s)	190, 265
BstKTI	GATC	2 cut(s)	223, 277
BstMBI	GATC	2 cut(s)	220, 274
BstMWI	GCNNNNNNNGC	1 cut(s)	46
BstNI	CCWGG	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	270
BstV1I	GCAGC	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
Bsu36I	CCTNAGG	1 cut(s)	102
BsuRI	GGCC	3 cut(s)	32, 112, 294
BtgI	CCRYGG	1 cut(s)	202
BtsCI	GGATG	2 cut(s)	190, 265
Cac8I	GCNNGC	1 cut(s)	30
Csp6I	GTAC	1 cut(s)	19
CviJI	RGCY	7 cut(s)	15, 28, 32, 64, 112, 294, 305
CviKI_1	RGCY	7 cut(s)	15, 28, 32, 64, 112, 294, 305
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	2 cut(s)	222, 276
DpnII	GATC	2 cut(s)	220, 274
Eco147I	AGGCCT	1 cut(s)	294
Eco81I	CCTNAGG	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	270
EcoT22I	ATGCAT	1 cut(s)	285
FaiI	YATR	4 cut(s)	248, 290, 302, 352
FaqI	GGGAC	1 cut(s)	144
Fnu4HI	GCNGC	1 cut(s)	41
FokI	GGATG	2 cut(s)	197, 252
Fsp4HI	GCNGC	1 cut(s)	41
GluI	GCNGC	1 cut(s)	41
GsuI	CTGGAG	1 cut(s)	200
HaeIII	GGCC	3 cut(s)	32, 112, 294
HapII	CCGG	1 cut(s)	227
HpaII	CCGG	1 cut(s)	227
Hpy188I	TCNGA	1 cut(s)	334
Hpy188III	TCNNGA	2 cut(s)	170, 179
Hpy99I	CGWCG	1 cut(s)	165
HpyAV	CCTTC	3 cut(s)	43, 98, 306
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	2 cut(s)	283, 350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	46
HpyF3I	CTNAG	1 cut(s)	102
HpySE526I	ACGT	1 cut(s)	81
Kzo9I	GATC	2 cut(s)	220, 274
LmnI	GCTCC	1 cut(s)	317
LpnPI	CCDG	8 cut(s)	14, 50, 94, 114, 164, 240, 257, 284
Lsp1109I	GCAGC	1 cut(s)	27
LweI	GCATC	1 cut(s)	292
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	2 cut(s)	222, 276
MboI	GATC	2 cut(s)	220, 274
MboII	GAAGA	1 cut(s)	215
MflI	RGATCY	1 cut(s)	274
MnlI	CCTC	5 cut(s)	51, 97, 121, 175, 186
Mph1103I	ATGCAT	1 cut(s)	285
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	1 cut(s)	272
Mva1269I	GAATGC	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	272
MwoI	GCNNNNNNNGC	1 cut(s)	46
NdeII	GATC	2 cut(s)	220, 274
NmuCI	GTSAC	1 cut(s)	3
NsiI	ATGCAT	1 cut(s)	285
PceI	AGGCCT	1 cut(s)	294
PctI	GAATGC	1 cut(s)	51
PkrI	GCNGC	1 cut(s)	42
Psp1406I	AACGTT	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	270
PspGI	CCWGG	1 cut(s)	270
PsuI	RGATCY	1 cut(s)	274
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SatI	GCNGC	1 cut(s)	41
Sau3AI	GATC	2 cut(s)	220, 274
ScrFI	CCNGG	1 cut(s)	272
SetI	ASST	5 cut(s)	66, 84, 178, 218, 327
SfaNI	GCATC	1 cut(s)	292
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
SseBI	AGGCCT	1 cut(s)	294
StuI	AGGCCT	1 cut(s)	294
StyD4I	CCNGG	1 cut(s)	270
TaiI	ACGT	1 cut(s)	84
TatI	WGTACW	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	1 cut(s)	40
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	1 cut(s)	263
Zsp2I	ATGCAT	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.