Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000112.1

Orthogroup ID

OG0031004

Physical Location & Seq

Genomic Coordinates Forward (+)

175319 .. 175732

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atggtatcagctacactaatgaagattatggcaccgtgttggagaccttctgttgaaggtgaaaattctaatagagctggggatgcgagtggtcgagttaatggtttattgtggtataaagatttgggaaaccatgttaatggtgaattctcgatggcagtaattcaagcaaacaatttgttggaagaccatagccaacttgaatccggaccgttgagcttgctcgaatcaggtccccatggaacatttgttggagtttatgatggacatggaggtccagaagcagcccgatttgtaaatgatcacctgttcaagaatctcaagagtatgttgttccttgacttgcaccatttgttattttaccagatctcttataattcattttttctacttgttgagaagttttggaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0016020 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0043900 GO:0043901 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0065007 GO:0071944 GO:0080134 GO:1900424 GO:1900425

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_C_2 PP2C

Protein Analysis

137

Amino Acids

15.33

Weight (kDa)

5.72

Isoelectric Point (pI)

23.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031004)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8230599.1_g000001 Rmu_ssc0000112.1_g000035

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	375
AasI	GACNNNNNNGTC	1 cut(s)	273
AccB1I	GGYRCC	1 cut(s)	31
AccIII	TCCGGA	1 cut(s)	206
AcsI	RAATTY	2 cut(s)	64, 146
AgsI	TTSAA	4 cut(s)	56, 167, 203, 313
AluBI	AGCT	3 cut(s)	11, 77, 219
AluI	AGCT	3 cut(s)	11, 77, 219
Alw26I	GTCTC	1 cut(s)	37
Aor13HI	TCCGGA	1 cut(s)	206
ApeKI	GCWGC	1 cut(s)	284
ApoI	RAATTY	2 cut(s)	64, 146
AspS9I	GGNCC	3 cut(s)	209, 233, 275
AsuHPI	GGTGA	3 cut(s)	71, 155, 296
AvaII	GGWCC	3 cut(s)	209, 233, 275
BanI	GGYRCC	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	296
BccI	CCATC	2 cut(s)	148, 257
BclI	TGATCA	1 cut(s)	301
BcoDI	GTCTC	1 cut(s)	37
BglII	AGATCT	1 cut(s)	366
BisI	GCNGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	286
Bme18I	GGWCC	3 cut(s)	209, 233, 275
BmgT120I	GGNCC	3 cut(s)	209, 233, 275
BmiI	GGNNCC	2 cut(s)	33, 235
BmsI	GCATC	1 cut(s)	73
BpiI	GAAGAC	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	305
BsaI	GGTCTC	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	238
BsaWI	WCCGGW	1 cut(s)	206
BseAI	TCCGGA	1 cut(s)	206
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	1 cut(s)	88
BseXI	GCAGC	1 cut(s)	296
BseYI	CCCAGC	1 cut(s)	77
BshNI	GGYRCC	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	219
BsmAI	GTCTC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	219
Bso31I	GGTCTC	1 cut(s)	37
Bsp13I	TCCGGA	1 cut(s)	206
Bsp143I	GATC	2 cut(s)	301, 366
Bsp19I	CCATGG	1 cut(s)	238
BspEI	TCCGGA	1 cut(s)	206
BspLI	GGNNCC	2 cut(s)	33, 235
BspT107I	GGYRCC	1 cut(s)	31
BspTNI	GGTCTC	1 cut(s)	37
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	2 cut(s)	301, 366
BssT1I	CCWWGG	1 cut(s)	238
Bst4CI	ACNGT	2 cut(s)	36, 213
BstC8I	GCNNGC	1 cut(s)	221
BstDSI	CCRYGG	1 cut(s)	238
BstF5I	GGATG	1 cut(s)	88
BstKTI	GATC	2 cut(s)	304, 369
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	2 cut(s)	301, 366
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	296
BstV2I	GAAGAC	1 cut(s)	192
BstX2I	RGATCY	1 cut(s)	366
BstXI	CCANNNNNNTGG	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	366
BtgI	CCRYGG	1 cut(s)	238
BtsCI	GGATG	1 cut(s)	88
Cac8I	GCNNGC	1 cut(s)	221
Cfr13I	GGNCC	3 cut(s)	209, 233, 275
CpoI	CGGWCCG	1 cut(s)	209
CspI	CGGWCCG	1 cut(s)	209
CviAII	CATG	3 cut(s)	134, 239, 269
CviJI	RGCY	5 cut(s)	11, 77, 195, 219, 287
CviKI_1	RGCY	5 cut(s)	11, 77, 195, 219, 287
DpnI	GATC	2 cut(s)	303, 368
DpnII	GATC	2 cut(s)	301, 366
DrdI	GACNNNNNNGTC	1 cut(s)	273
DseDI	GACNNNNNNGTC	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	238
Eco31I	GGTCTC	1 cut(s)	37
Eco47I	GGWCC	3 cut(s)	209, 233, 275
EcoO109I	RGGNCCY	1 cut(s)	233
EcoRI	GAATTC	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	238
FaeI	CATG	3 cut(s)	137, 242, 272
FaiI	YATR	9 cut(s)	29, 117, 135, 192, 240, 261, 270, 329, 375
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	3 cut(s)	133, 238, 268
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	1 cut(s)	285
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	1 cut(s)	285
GluI	GCNGC	1 cut(s)	285
GsaI	CCCAGC	1 cut(s)	81
HapII	CCGG	1 cut(s)	207
Hin1II	CATG	3 cut(s)	137, 242, 272
HinfI	GANTC	3 cut(s)	203, 227, 316
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	3 cut(s)	71, 155, 296
Hpy188III	TCNNGA	5 cut(s)	151, 207, 278, 313, 322
HpyAV	CCTTC	2 cut(s)	50, 57
HpyCH4III	ACNGT	2 cut(s)	36, 213
HpyCH4V	TGCA	1 cut(s)	346
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
Hsp92II	CATG	3 cut(s)	137, 242, 272
Kpn2I	TCCGGA	1 cut(s)	206
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	2 cut(s)	301, 366
LpnPI	CCDG	6 cut(s)	63, 216, 220, 291, 320, 377
Lsp1109I	GCAGC	1 cut(s)	296
LweI	GCATC	1 cut(s)	73
MalI	GATC	2 cut(s)	303, 368
MboI	GATC	2 cut(s)	301, 366
MboII	GAAGA	2 cut(s)	34, 197
MflI	RGATCY	1 cut(s)	366
MluCI	AATT	6 cut(s)	64, 146, 162, 175, 376, 409
MmeI	TCCRAC	3 cut(s)	20, 162, 232
MnlI	CCTC	1 cut(s)	266
MroI	TCCGGA	1 cut(s)	206
MseI	TTAA	3 cut(s)	99, 138, 412
MslI	CAYNNNNRTG	1 cut(s)	138
MspI	CCGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	238
NdeII	GATC	2 cut(s)	301, 366
NlaIII	CATG	3 cut(s)	137, 242, 272
NlaIV	GGNNCC	2 cut(s)	33, 235
PfeI	GAWTC	3 cut(s)	203, 227, 316
PkrI	GCNGC	1 cut(s)	286
PpuMI	RGGWCCY	1 cut(s)	233
PsiI	TTATAA	1 cut(s)	375
Psp5II	RGGWCCY	1 cut(s)	233
PspFI	CCCAGC	1 cut(s)	77
PspN4I	GGNNCC	2 cut(s)	33, 235
PspPI	GGNCC	3 cut(s)	209, 233, 275
PspPPI	RGGWCCY	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	366
RseI	CAYNNNNRTG	1 cut(s)	138
Rsr2I	CGGWCCG	1 cut(s)	209
RsrII	CGGWCCG	1 cut(s)	209
SaqAI	TTAA	3 cut(s)	99, 138, 412
SatI	GCNGC	1 cut(s)	285
Sau3AI	GATC	2 cut(s)	301, 366
Sau96I	GGNCC	3 cut(s)	209, 233, 275
SetI	ASST	8 cut(s)	13, 49, 61, 79, 221, 235, 277, 309
SfaNI	GCATC	1 cut(s)	73
SinI	GGWCC	3 cut(s)	209, 233, 275
SmiMI	CAYNNNNRTG	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
Sse9I	AATT	6 cut(s)	64, 146, 162, 175, 376, 409
StyI	CCWWGG	1 cut(s)	238
TaaI	ACNGT	2 cut(s)	36, 213
TaqI	TCGA	3 cut(s)	94, 152, 225
TasI	AATT	6 cut(s)	64, 146, 162, 175, 376, 409
TfiI	GAWTC	3 cut(s)	203, 227, 316
Tru1I	TTAA	3 cut(s)	99, 138, 412
Tru9I	TTAA	3 cut(s)	99, 138, 412
TseI	GCWGC	1 cut(s)	284
TspDTI	ATGAA	2 cut(s)	35, 369
VpaK11BI	GGWCC	3 cut(s)	209, 233, 275
XapI	RAATTY	2 cut(s)	64, 146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.