Rmu_ssc0000114.1_g000010

Hippocampus abundant transcript 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000114.1
N/A
Physical Location & Seq
Reverse (-)
56417 .. 65053
8637 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 567 bp
atggagaagttatcaccaggggggctcagccacctttacatgacgatctttctgcacaacttcgcgacgttcatggtgatcccggccattaccgacgttacaatgactgcgctttgtcccggaagagacgagtgctctatcgctatttacctcaccggatttcaacaagcgatcgtagggctgggaacactggtgatgatgcctttgggaggtaattggttacagagtaatggagaagttatcaccaggggggctcagccacctttacatgacgatctttctgcacaacttcgcgacgttcatggtgatcccggccattaccgacgttacaatgactgcgctttgtcccggaagagacgagtgctctatcgctatttacctcaccggatttcaacaagcgatcgtagggctgggaacactggtgatgatgcctttggtagggaatctctcagacaaatgtgggagaaaagctctgctcacactaccaatgattttcactataatccccttagaagggccgcgctcgcgcgtgcgtattgttctccctctcttgctatgcatgtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1

Protein Analysis

188

Amino Acids

21.06

Weight (kDa)

9.0

Isoelectric Point (pI)

51.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 5 cut(s) 65, 294, 521, 527, 529
AciI CCGC 1 cut(s) 519
AclWI GGATC 2 cut(s) 73, 302
AcoI YGGCCR 2 cut(s) 84, 313
AfiI CCNNNNNNNGG 4 cut(s) 209, 438, 513, 514
AgsI TTSAA 2 cut(s) 164, 393
AjnI CCWGG 2 cut(s) 16, 245
AluBI AGCT 1 cut(s) 471
AluI AGCT 1 cut(s) 471
Alw21I GWGCWC 2 cut(s) 137, 366
Alw26I GTCTC 2 cut(s) 120, 349
AlwI GGATC 2 cut(s) 73, 302
AoxI GGCC 3 cut(s) 84, 313, 516
AspLEI GCGC 4 cut(s) 112, 341, 523, 529
AspS9I GGNCC 1 cut(s) 516
AsuC2I CCSGG 4 cut(s) 83, 120, 312, 349
AsuHPI GGTGA 8 cut(s) 6, 88, 145, 205, 235, 317, 374, 434
BanII GRGCYC 2 cut(s) 27, 256
Bbv12I GWGCWC 2 cut(s) 137, 366
BcgI CGANNNNNNTGC 4 cut(s) 34, 68, 263, 297
BciT130I CCWGG 2 cut(s) 18, 247
BcnI CCSGG 4 cut(s) 83, 120, 312, 349
BcoDI GTCTC 2 cut(s) 120, 349
BisI GCNGC 1 cut(s) 519
BlpI GCTNAGC 2 cut(s) 26, 255
BlsI GCNGC 1 cut(s) 520
Bme1390I CCNGG 6 cut(s) 18, 83, 120, 247, 312, 349
BmgT120I GGNCC 1 cut(s) 516
BmrFI CCNGG 6 cut(s) 18, 83, 120, 247, 312, 349
BmsI GCATC 2 cut(s) 189, 418
BplI GAGNNNNNCTC 2 cut(s) 455, 487
Bpu1102I GCTNAGC 2 cut(s) 26, 255
BpuMI CCSGG 4 cut(s) 83, 120, 312, 349
BsaJI CCNNGG 2 cut(s) 17, 246
BsaWI WCCGGW 2 cut(s) 155, 384
Bsc4I CCNNNNNNNGG 4 cut(s) 209, 438, 513, 514
Bse1I ACTGG 2 cut(s) 195, 424
BseBI CCWGG 2 cut(s) 18, 247
BseDI CCNNGG 2 cut(s) 17, 246
BseLI CCNNNNNNNGG 4 cut(s) 209, 438, 513, 514
BseMII CTCAG 3 cut(s) 40, 269, 463
BseNI ACTGG 2 cut(s) 195, 424
BseYI CCCAGC 2 cut(s) 181, 410
BsgI GTGCAG 2 cut(s) 38, 267
Bsh1236I CGCG 5 cut(s) 65, 294, 521, 527, 529
Bsh1285I CGRYCG 2 cut(s) 174, 403
BshFI GGCC 3 cut(s) 86, 315, 518
BsiEI CGRYCG 2 cut(s) 174, 403
BsiHKAI GWGCWC 2 cut(s) 137, 366
BsiSI CCGG 6 cut(s) 83, 120, 156, 312, 349, 385
BslFI GGGAC 2 cut(s) 102, 331
BslI CCNNNNNNNGG 4 cut(s) 209, 438, 513, 514
BsmAI GTCTC 2 cut(s) 120, 349
BsmBI CGTCTC 2 cut(s) 120, 349
BsmFI GGGAC 2 cut(s) 102, 331
BsnI GGCC 3 cut(s) 86, 315, 518
Bsp1286I GDGCHC 4 cut(s) 27, 137, 256, 366
Bsp143I GATC 6 cut(s) 45, 78, 171, 274, 307, 400
Bsp1720I GCTNAGC 2 cut(s) 26, 255
Bsp68I TCGCGA 2 cut(s) 65, 294
BspACI CCGC 1 cut(s) 519
BspANI GGCC 3 cut(s) 86, 315, 518
BspCNI CTCAG 3 cut(s) 39, 268, 462
BspFNI CGCG 5 cut(s) 65, 294, 521, 527, 529
BspPI GGATC 2 cut(s) 73, 302
BsrI ACTGG 2 cut(s) 195, 424
BssECI CCNNGG 2 cut(s) 17, 246
BssMI GATC 6 cut(s) 45, 78, 171, 274, 307, 400
Bst2UI CCWGG 2 cut(s) 18, 247
Bst6I CTCTTC 2 cut(s) 118, 347
BstC8I GCNNGC 2 cut(s) 525, 531
BstDEI CTNAG 4 cut(s) 26, 255, 449, 509
BstENI CCTNNNNNAGG 2 cut(s) 207, 436
BstFNI CGCG 5 cut(s) 65, 294, 521, 527, 529
BstHHI GCGC 4 cut(s) 112, 341, 523, 529
BstKTI GATC 6 cut(s) 48, 81, 174, 277, 310, 403
BstMAI GTCTC 2 cut(s) 120, 349
BstMBI GATC 6 cut(s) 45, 78, 171, 274, 307, 400
BstMCI CGRYCG 2 cut(s) 174, 403
BstMWI GCNNNNNNNGC 1 cut(s) 524
BstNI CCWGG 2 cut(s) 18, 247
BstNSI RCATGY 1 cut(s) 563
BstSCI CCNGG 6 cut(s) 16, 81, 118, 245, 310, 347
BstUI CGCG 5 cut(s) 65, 294, 521, 527, 529
BsuRI GGCC 3 cut(s) 86, 315, 518
BtsIMutI CAGTG 2 cut(s) 188, 417
BtuMI TCGCGA 2 cut(s) 65, 294
Cac8I GCNNGC 2 cut(s) 525, 531
CfoI GCGC 4 cut(s) 112, 341, 523, 529
Cfr13I GGNCC 1 cut(s) 516
CviAII CATG 5 cut(s) 40, 73, 269, 302, 560
DdeI CTNAG 4 cut(s) 26, 255, 449, 509
DpnI GATC 6 cut(s) 47, 80, 173, 276, 309, 402
DpnII GATC 6 cut(s) 45, 78, 171, 274, 307, 400
EaeI YGGCCR 2 cut(s) 84, 313
Eam1104I CTCTTC 2 cut(s) 118, 347
EarI CTCTTC 2 cut(s) 118, 347
Eco24I GRGCYC 2 cut(s) 27, 256
EcoNI CCTNNNNNAGG 2 cut(s) 207, 436
EcoRII CCWGG 2 cut(s) 16, 245
EcoT22I ATGCAT 1 cut(s) 561
EcoT38I GRGCYC 2 cut(s) 27, 256
Esp3I CGTCTC 2 cut(s) 120, 349
FaeI CATG 5 cut(s) 43, 76, 272, 305, 563
FaiI YATR 7 cut(s) 41, 74, 270, 303, 501, 557, 561
FaqI GGGAC 2 cut(s) 102, 331
FatI CATG 5 cut(s) 39, 72, 268, 301, 559
Fnu4HI GCNGC 1 cut(s) 519
FriOI GRGCYC 2 cut(s) 27, 256
Fsp4HI GCNGC 1 cut(s) 519
GlaI GCGC 4 cut(s) 111, 340, 522, 528
GluI GCNGC 1 cut(s) 519
GsaI CCCAGC 2 cut(s) 185, 414
HaeIII GGCC 3 cut(s) 86, 315, 518
HapII CCGG 6 cut(s) 83, 120, 156, 312, 349, 385
HhaI GCGC 4 cut(s) 112, 341, 523, 529
Hin1II CATG 5 cut(s) 43, 76, 272, 305, 563
Hin6I GCGC 4 cut(s) 110, 339, 521, 527
HinP1I GCGC 4 cut(s) 110, 339, 521, 527
HinfI GANTC 1 cut(s) 443
HpaII CCGG 6 cut(s) 83, 120, 156, 312, 349, 385
HphI GGTGA 8 cut(s) 6, 88, 145, 205, 235, 317, 374, 434
Hpy188I TCNGA 1 cut(s) 452
Hpy188III TCNNGA 2 cut(s) 64, 293
Hpy99I CGWCG 4 cut(s) 70, 98, 299, 327
HpyAV CCTTC 1 cut(s) 507
HpyCH4IV ACGT 4 cut(s) 68, 96, 297, 325
HpyCH4V TGCA 3 cut(s) 55, 284, 559
HpyF10VI GCNNNNNNNGC 1 cut(s) 524
HpyF3I CTNAG 4 cut(s) 26, 255, 449, 509
HpySE526I ACGT 4 cut(s) 68, 96, 297, 325
Hsp92II CATG 5 cut(s) 43, 76, 272, 305, 563
HspAI GCGC 4 cut(s) 110, 339, 521, 527
Kzo9I GATC 6 cut(s) 45, 78, 171, 274, 307, 400
LweI GCATC 2 cut(s) 189, 418
MaeII ACGT 4 cut(s) 68, 96, 297, 325
MaeIII GTNAC 3 cut(s) 97, 219, 326
MalI GATC 6 cut(s) 47, 80, 173, 276, 309, 402
MboI GATC 6 cut(s) 45, 78, 171, 274, 307, 400
MboII GAAGA 2 cut(s) 135, 364
MhlI GDGCHC 4 cut(s) 27, 137, 256, 366
MluCI AATT 1 cut(s) 214
MnlI CCTC 4 cut(s) 161, 203, 390, 556
Mph1103I ATGCAT 1 cut(s) 561
MspI CCGG 6 cut(s) 83, 120, 156, 312, 349, 385
MspR9I CCNGG 6 cut(s) 18, 83, 120, 247, 312, 349
MvaI CCWGG 2 cut(s) 18, 247
MvnI CGCG 5 cut(s) 65, 294, 521, 527, 529
MwoI GCNNNNNNNGC 1 cut(s) 524
NciI CCSGG 4 cut(s) 83, 120, 312, 349
NdeII GATC 6 cut(s) 45, 78, 171, 274, 307, 400
NlaIII CATG 5 cut(s) 43, 76, 272, 305, 563
NruI TCGCGA 2 cut(s) 65, 294
NsiI ATGCAT 1 cut(s) 561
NspI RCATGY 1 cut(s) 563
PfeI GAWTC 1 cut(s) 443
PfoI TCCNGGA 2 cut(s) 118, 347
PkrI GCNGC 1 cut(s) 520
Ple19I CGATCG 2 cut(s) 174, 403
Psp6I CCWGG 2 cut(s) 16, 245
PspFI CCCAGC 2 cut(s) 181, 410
PspGI CCWGG 2 cut(s) 16, 245
PspPI GGNCC 1 cut(s) 516
PvuI CGATCG 2 cut(s) 174, 403
RruI TCGCGA 2 cut(s) 65, 294
SatI GCNGC 1 cut(s) 519
Sau3AI GATC 6 cut(s) 45, 78, 171, 274, 307, 400
Sau96I GGNCC 1 cut(s) 516
ScrFI CCNGG 6 cut(s) 18, 83, 120, 247, 312, 349
SduI GDGCHC 4 cut(s) 27, 137, 256, 366
SfaNI GCATC 2 cut(s) 189, 418
Sse9I AATT 1 cut(s) 214
SsiI CCGC 1 cut(s) 519
StyD4I CCNGG 6 cut(s) 16, 81, 118, 245, 310, 347
TaiI ACGT 4 cut(s) 71, 99, 300, 328
TasI AATT 1 cut(s) 214
TauI GCSGC 1 cut(s) 521
TfiI GAWTC 1 cut(s) 443
TscAI CASTG 2 cut(s) 195, 424
TspDTI ATGAA 2 cut(s) 61, 290
TspRI CASTG 2 cut(s) 195, 424
XagI CCTNNNNNAGG 2 cut(s) 207, 436
XceI RCATGY 1 cut(s) 563
Zsp2I ATGCAT 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.