Rmu_ssc0000119.1_g000005

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000119.1
N/A
Physical Location & Seq
Reverse (-)
17002 .. 17580
579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000119.1_g000005.1.cds

Sequence Viewer

Length: 579 bp
atgcgccctttgaggcgcaccacaatcatcaactacttcagcaacttagatgagattgatgctgaaaagacaaagttttctctcattcaagttgctgaagtagttgatgattgtggtgcgcctcaaagggcgcatggtaataaaagggagacagactctttactagtaggtcatgttgttggaagagatggtgataaggaaaaaattatccttctctttgatgacaccggttcctccagtgtcgataatatttcagtcatttccatcttcgggttagcagggttgggaaaaactacacttgctaaatcagtgtataatgatgctatggtagagaacaaatttaatatgagaatgtgggtatgcgtctcagaaaactttgatatccatacattagttcgtggcattattgctgcaactaaacaagaatgtgctgttgaaagtttagatcttatgaaaaaggggttgcagggtattttgaaagataaaaagtttttgttagtgttggacgatgtatgggataaagagtcagttatttcgaaggatcaaggaaatagaattgtgtttatgggtcaagagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

192

Amino Acids

21.41

Weight (kDa)

5.48

Isoelectric Point (pI)

27.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 549
AcsI RAATTY 1 cut(s) 338
AcuI CTGAAG 2 cut(s) 22, 117
AfiI CCNNNNNNNGG 1 cut(s) 270
AgeI ACCGGT 1 cut(s) 227
AgsI TTSAA 3 cut(s) 89, 437, 478
AhlI ACTAGT 1 cut(s) 163
Alw26I GTCTC 2 cut(s) 143, 370
AlwI GGATC 1 cut(s) 549
ApeKI GCWGC 1 cut(s) 410
ApoI RAATTY 1 cut(s) 338
AsiGI ACCGGT 1 cut(s) 227
AspLEI GCGC 4 cut(s) 6, 18, 121, 133
AsuHPI GGTGA 1 cut(s) 203
AsuII TTCGAA 1 cut(s) 536
BbvI GCAGC 1 cut(s) 397
BccI CCATC 2 cut(s) 182, 272
BcoDI GTCTC 2 cut(s) 143, 370
BcuI ACTAGT 1 cut(s) 163
BfaI CTAG 1 cut(s) 164
BglII AGATCT 1 cut(s) 445
BisI GCNGC 1 cut(s) 411
BlsI GCNGC 1 cut(s) 412
BmiI GGNNCC 1 cut(s) 232
BmsI GCATC 2 cut(s) 49, 310
BplI GAGNNNNNCTC 2 cut(s) 140, 172
BpmI CTGGAG 1 cut(s) 220
Bpu14I TTCGAA 1 cut(s) 536
BsaWI WCCGGW 1 cut(s) 227
Bsc4I CCNNNNNNNGG 1 cut(s) 270
Bse118I RCCGGY 1 cut(s) 227
Bse1I ACTGG 1 cut(s) 237
BseLI CCNNNNNNNGG 1 cut(s) 270
BseMII CTCAG 1 cut(s) 381
BseNI ACTGG 1 cut(s) 237
BseXI GCAGC 1 cut(s) 397
BshTI ACCGGT 1 cut(s) 227
BsiSI CCGG 1 cut(s) 228
BslI CCNNNNNNNGG 1 cut(s) 270
BsmAI GTCTC 2 cut(s) 143, 370
BsmBI CGTCTC 1 cut(s) 370
Bsp119I TTCGAA 1 cut(s) 536
Bsp143I GATC 2 cut(s) 445, 541
BspCNI CTCAG 1 cut(s) 380
BspLI GGNNCC 1 cut(s) 232
BspPI GGATC 1 cut(s) 549
BspT104I TTCGAA 1 cut(s) 536
BsrFI RCCGGY 1 cut(s) 227
BsrI ACTGG 1 cut(s) 237
BssAI RCCGGY 1 cut(s) 227
BssMI GATC 2 cut(s) 445, 541
Bst6I CTCTTC 1 cut(s) 178
BstBI TTCGAA 1 cut(s) 536
BstDEI CTNAG 2 cut(s) 46, 367
BstHHI GCGC 4 cut(s) 6, 18, 121, 133
BstKTI GATC 2 cut(s) 448, 544
BstMAI GTCTC 2 cut(s) 143, 370
BstMBI GATC 2 cut(s) 445, 541
BstV1I GCAGC 1 cut(s) 397
BstX2I RGATCY 1 cut(s) 445
BstYI RGATCY 1 cut(s) 445
BtsIMutI CAGTG 2 cut(s) 244, 315
CfoI GCGC 4 cut(s) 6, 18, 121, 133
Cfr10I RCCGGY 1 cut(s) 227
CseI GACGC 1 cut(s) 352
CspAI ACCGGT 1 cut(s) 227
CviAII CATG 2 cut(s) 134, 173
DdeI CTNAG 2 cut(s) 46, 367
DpnI GATC 2 cut(s) 447, 543
DpnII GATC 2 cut(s) 445, 541
Eam1104I CTCTTC 1 cut(s) 178
EarI CTCTTC 1 cut(s) 178
Eco32I GATATC 1 cut(s) 382
Eco57I CTGAAG 2 cut(s) 22, 117
EcoRV GATATC 1 cut(s) 382
Esp3I CGTCTC 1 cut(s) 370
FaeI CATG 2 cut(s) 137, 176
FatI CATG 2 cut(s) 133, 172
Fnu4HI GCNGC 1 cut(s) 411
Fsp4HI GCNGC 1 cut(s) 411
FspBI CTAG 1 cut(s) 164
GlaI GCGC 4 cut(s) 5, 17, 120, 132
GluI GCNGC 1 cut(s) 411
GsuI CTGGAG 1 cut(s) 220
HapII CCGG 1 cut(s) 228
HgaI GACGC 1 cut(s) 352
HhaI GCGC 4 cut(s) 6, 18, 121, 133
Hin1II CATG 2 cut(s) 137, 176
Hin6I GCGC 4 cut(s) 4, 16, 119, 131
HinP1I GCGC 4 cut(s) 4, 16, 119, 131
HinfI GANTC 2 cut(s) 155, 524
HpaII CCGG 1 cut(s) 228
HphI GGTGA 1 cut(s) 203
Hpy188I TCNGA 1 cut(s) 370
Hpy188III TCNNGA 1 cut(s) 572
HpyAV CCTTC 2 cut(s) 221, 532
HpyCH4V TGCA 2 cut(s) 413, 466
HpyF3I CTNAG 2 cut(s) 46, 367
Hsp92II CATG 2 cut(s) 137, 176
HspAI GCGC 4 cut(s) 4, 16, 119, 131
Kzo9I GATC 2 cut(s) 445, 541
LpnPI CCDG 4 cut(s) 241, 250, 264, 452
Lsp1109I GCAGC 1 cut(s) 397
LweI GCATC 2 cut(s) 49, 310
MaeI CTAG 1 cut(s) 164
MalI GATC 2 cut(s) 447, 543
MboI GATC 2 cut(s) 445, 541
MboII GAAGA 2 cut(s) 195, 259
MflI RGATCY 1 cut(s) 445
MluCI AATT 3 cut(s) 204, 338, 555
MlyI GAGTC 2 cut(s) 149, 533
MmeI TCCRAC 2 cut(s) 160, 483
MnlI CCTC 3 cut(s) 6, 132, 244
MseI TTAA 1 cut(s) 342
MspI CCGG 1 cut(s) 228
NdeII GATC 2 cut(s) 445, 541
NlaIII CATG 2 cut(s) 137, 176
NlaIV GGNNCC 1 cut(s) 232
NspV TTCGAA 1 cut(s) 536
PinAI ACCGGT 1 cut(s) 227
PkrI GCNGC 1 cut(s) 412
PleI GAGTC 2 cut(s) 149, 532
PpsI GAGTC 2 cut(s) 149, 532
PspN4I GGNNCC 1 cut(s) 232
PsuI RGATCY 1 cut(s) 445
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 1 cut(s) 411
Sau3AI GATC 2 cut(s) 445, 541
SchI GAGTC 2 cut(s) 149, 533
SetI ASST 1 cut(s) 172
SfaNI GCATC 2 cut(s) 49, 310
SfuI TTCGAA 1 cut(s) 536
SpeI ACTAGT 1 cut(s) 163
Sse9I AATT 3 cut(s) 204, 338, 555
SspI AATATT 1 cut(s) 250
SspMI CTAG 1 cut(s) 164
TaqI TCGA 2 cut(s) 243, 536
TasI AATT 3 cut(s) 204, 338, 555
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 2 cut(s) 244, 315
TseI GCWGC 1 cut(s) 410
TspDTI ATGAA 1 cut(s) 467
TspRI CASTG 2 cut(s) 244, 315
XapI RAATTY 1 cut(s) 338
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.