Rmu_ssc0000119.1_g000017

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000119.1
N/A
Physical Location & Seq
Reverse (-)
57201 .. 57710
510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000119.1_g000017.1.cds

Sequence Viewer

Length: 510 bp
atggtgtcctcctctcagaacaataacaaaaccctccattcccttcttgcctcaaacctcaccaagctcacaatcccaccttcctcctcttcttctccgcctcaagacttcgactttaacgacgtcttcggccccccaaccgcctccaacgacggcggcgcgtccacttcattctcgccgtcgttactcgtcattcacaaccgctcccactccttcgtcggcccctccccgcgcttcacaccctcctccttcctccccttcaccgccgccgaatccgactccgaggaagacgaaaacgacgccgtttccgaaaccgtgaaagatgaggaatcggcggttcggaagttcgggccttgggatttcgagattctcagagtcgtcggcaagggcgcgttcgggaaggtgtttcaggtgaggaagaagagcagtgatggcgatgaagatggtgatgggctttatgccatgaaggtcatgaggaaggagactgtaaatcacgaatcggataattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045727 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:2000112
KEGG Pathways
Metabolic & Signaling
ko01521 ko01522 ko04012 ko04066 ko04140 ko04150 ko04151 ko04152 ko04211 ko04212 ko04213 ko04350 ko04371 ko04666 ko04714 ko04910 ko04931 ko05165 ko05200 ko05205 ko05210 ko05212 ko05221 ko05224 ko05225 ko05226 ko05231 map01521 map01522 map04012 map04066 map04140 map04150 map04151 map04152 map04211 map04212 map04213 map04350 map04371 map04666 map04714 map04910 map04931 map05165 map05200 map05205 map05210 map05212 map05221 map05224 map05225 map05226 map05231
Pfam Domains
Protein Families
Pkinase Pkinase_C

Protein Analysis

169

Amino Acids

18.3

Weight (kDa)

4.83

Isoelectric Point (pI)

57.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 126
AccBSI CCGCTC 1 cut(s) 204
AccII CGCG 3 cut(s) 161, 232, 392
AciI CCGC 8 cut(s) 98, 141, 156, 202, 230, 264, 267, 335
AcyI GRCGYC 2 cut(s) 123, 300
AluBI AGCT 1 cut(s) 67
AluI AGCT 1 cut(s) 67
Alw26I GTCTC 1 cut(s) 476
AoxI GGCC 3 cut(s) 130, 220, 350
AspLEI GCGC 3 cut(s) 161, 234, 392
AspS9I GGNCC 3 cut(s) 131, 221, 350
AsuHPI GGTGA 4 cut(s) 52, 253, 424, 458
BbsI GAAGAC 2 cut(s) 118, 294
BccI CCATC 3 cut(s) 425, 437, 443
BceAI ACGGC 3 cut(s) 163, 169, 287
BcoDI GTCTC 1 cut(s) 476
BisI GCNGC 2 cut(s) 157, 267
BlsI GCNGC 2 cut(s) 158, 268
BmgT120I GGNCC 3 cut(s) 131, 221, 350
BmiI GGNNCC 2 cut(s) 133, 223
BpiI GAAGAC 2 cut(s) 118, 294
BpuEI CTTGAG 1 cut(s) 87
BsaHI GRCGYC 2 cut(s) 123, 300
BsaJI CCNNGG 2 cut(s) 282, 353
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
BseDI CCNNGG 2 cut(s) 282, 353
BseMII CTCAG 2 cut(s) 29, 385
BseRI GAGGAG 2 cut(s) 76, 235
Bsh1236I CGCG 3 cut(s) 161, 232, 392
BshFI GGCC 3 cut(s) 132, 222, 352
BsmAI GTCTC 1 cut(s) 476
BsnI GGCC 3 cut(s) 132, 222, 352
BspACI CCGC 8 cut(s) 98, 141, 156, 202, 230, 264, 267, 335
BspANI GGCC 3 cut(s) 132, 222, 352
BspCNI CTCAG 2 cut(s) 28, 384
BspFNI CGCG 3 cut(s) 161, 232, 392
BspHI TCATGA 1 cut(s) 471
BspLI GGNNCC 2 cut(s) 133, 223
BspQI GCTCTTC 1 cut(s) 416
BsrBI CCGCTC 1 cut(s) 204
BssECI CCNNGG 2 cut(s) 282, 353
BssNI GRCGYC 2 cut(s) 123, 300
BssT1I CCWWGG 1 cut(s) 353
Bst4CI ACNGT 2 cut(s) 316, 487
Bst6I CTCTTC 2 cut(s) 94, 416
BstACI GRCGYC 2 cut(s) 123, 300
BstDEI CTNAG 2 cut(s) 15, 371
BstFNI CGCG 3 cut(s) 161, 232, 392
BstHHI GCGC 3 cut(s) 161, 234, 392
BstMAI GTCTC 1 cut(s) 476
BstMWI GCNNNNNNNGC 1 cut(s) 432
BstUI CGCG 3 cut(s) 161, 232, 392
BstV2I GAAGAC 2 cut(s) 118, 294
BsuRI GGCC 3 cut(s) 132, 222, 352
BtgZI GCGATG 1 cut(s) 450
BtsI GCAGTG 1 cut(s) 433
BtsIMutI CAGTG 1 cut(s) 433
CciI TCATGA 1 cut(s) 471
CfoI GCGC 3 cut(s) 161, 234, 392
Cfr13I GGNCC 3 cut(s) 131, 221, 350
CseI GACGC 2 cut(s) 150, 308
CviAII CATG 2 cut(s) 463, 472
CviJI RGCY 5 cut(s) 67, 132, 222, 352, 454
CviKI_1 RGCY 5 cut(s) 67, 132, 222, 352, 454
DdeI CTNAG 2 cut(s) 15, 371
Eam1104I CTCTTC 2 cut(s) 94, 416
EarI CTCTTC 2 cut(s) 94, 416
EciI GGCGGA 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 353
EcoT14I CCWWGG 1 cut(s) 353
ErhI CCWWGG 1 cut(s) 353
FaeI CATG 2 cut(s) 466, 475
FaiI YATR 3 cut(s) 459, 464, 473
FatI CATG 2 cut(s) 462, 471
FauI CCCGC 1 cut(s) 237
Fnu4HI GCNGC 2 cut(s) 157, 267
Fsp4HI GCNGC 2 cut(s) 157, 267
GlaI GCGC 3 cut(s) 160, 233, 391
GluI GCNGC 2 cut(s) 157, 267
HaeIII GGCC 3 cut(s) 132, 222, 352
HgaI GACGC 2 cut(s) 150, 308
HhaI GCGC 3 cut(s) 161, 234, 392
Hin1I GRCGYC 2 cut(s) 123, 300
Hin1II CATG 2 cut(s) 466, 475
Hin6I GCGC 3 cut(s) 159, 232, 390
HinP1I GCGC 3 cut(s) 159, 232, 390
HinfI GANTC 6 cut(s) 272, 278, 329, 367, 375, 497
HphI GGTGA 4 cut(s) 52, 253, 424, 458
Hpy166II GTNNAC 1 cut(s) 165
Hpy188I TCNGA 7 cut(s) 18, 277, 283, 310, 342, 374, 502
Hpy188III TCNNGA 5 cut(s) 104, 364, 397, 472, 494
Hpy8I GTNNAC 1 cut(s) 165
Hpy99I CGWCG 6 cut(s) 125, 155, 184, 221, 302, 383
HpyAV CCTTC 8 cut(s) 53, 90, 223, 259, 268, 394, 460, 472
HpyCH4III ACNGT 2 cut(s) 316, 487
HpyCH4IV ACGT 1 cut(s) 123
HpyF10VI GCNNNNNNNGC 1 cut(s) 432
HpyF3I CTNAG 2 cut(s) 15, 371
HpySE526I ACGT 1 cut(s) 123
Hsp92I GRCGYC 2 cut(s) 123, 300
Hsp92II CATG 2 cut(s) 466, 475
HspAI GCGC 3 cut(s) 159, 232, 390
LguI GCTCTTC 1 cut(s) 416
LmnI GCTCC 1 cut(s) 209
LpnPI CCDG 1 cut(s) 395
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 183
MbiI CCGCTC 1 cut(s) 204
MboII GAAGA 7 cut(s) 81, 84, 118, 299, 430, 433, 452
MluCI AATT 1 cut(s) 505
MlyI GAGTC 2 cut(s) 272, 384
MmeI TCCRAC 2 cut(s) 171, 300
MseI TTAA 2 cut(s) 117, 508
MvnI CGCG 3 cut(s) 161, 232, 392
MwoI GCNNNNNNNGC 1 cut(s) 432
NlaIII CATG 2 cut(s) 466, 475
NlaIV GGNNCC 2 cut(s) 133, 223
PagI TCATGA 1 cut(s) 471
PciSI GCTCTTC 1 cut(s) 416
PcsI WCGNNNNNNNCGW 2 cut(s) 117, 306
PfeI GAWTC 4 cut(s) 272, 329, 367, 497
PkrI GCNGC 2 cut(s) 158, 268
PleI GAGTC 2 cut(s) 272, 383
PpsI GAGTC 2 cut(s) 272, 383
PspN4I GGNNCC 2 cut(s) 133, 223
PspPI GGNCC 3 cut(s) 131, 221, 350
SapI GCTCTTC 1 cut(s) 416
SaqAI TTAA 2 cut(s) 117, 508
SatI GCNGC 2 cut(s) 157, 267
Sau96I GGNCC 3 cut(s) 131, 221, 350
SchI GAGTC 2 cut(s) 272, 384
SetI ASST 7 cut(s) 60, 69, 82, 126, 405, 414, 471
SmlI CTYRAG 1 cut(s) 102
SmoI CTYRAG 1 cut(s) 102
Sse9I AATT 1 cut(s) 505
SsiI CCGC 8 cut(s) 98, 141, 156, 202, 230, 264, 267, 335
StyI CCWWGG 1 cut(s) 353
TaaI ACNGT 2 cut(s) 316, 487
TaiI ACGT 1 cut(s) 126
TaqI TCGA 2 cut(s) 111, 363
TasI AATT 1 cut(s) 505
TauI GCSGC 2 cut(s) 159, 269
TfiI GAWTC 4 cut(s) 272, 329, 367, 497
Tru1I TTAA 2 cut(s) 117, 508
Tru9I TTAA 2 cut(s) 117, 508
TscAI CASTG 1 cut(s) 433
TspDTI ATGAA 3 cut(s) 159, 453, 479
TspRI CASTG 1 cut(s) 433
ZraI GACGTC 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.