Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000122.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4747 .. 9935

Gene Structure 5189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ctgtcagacgaaacgtctatccaattcaaccgtcagaagcagccatatcactcgacaagtgagaaagtctctgctaagcacaacaccactagcggaacttttcaccttaatcttacaagtgagaaagtctccgctaagcgtaacaccgctagtggaacttctcgtcttcatcttacaagtgagaaagtctccgctacgcgcaacaccgctagcgggacttcctctcaccttattcttgcaacggcggctccagaggcaatgcctcataatgacaacaaccgccaagagttgttgcagtcaagctctgttcctcgggaacaagtaagggtacagttgaaactgttttgtggtaaagattatccagataatccaccagctgtgaggttccaaacacggataaacatgacctgtgtcaatcatgaaactggagtggttgagccctgtctcttccccatgcttgcaaattggcaaagggaacatacaatggaggacattttgacacaattgaagaaagatatgatgtcaccacaaaaccgaaagctagctcagccacctgaaggccatgaagagggaagggtagatcagaaagggcttgtgctgaaatgtgtcattctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1900865 GO:1900871 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UQ_con zf-RanBP

Protein Analysis

205

Amino Acids

22.96

Weight (kDa)

8.93

Isoelectric Point (pI)

43.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	111 - 182	2.7e-07	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	199
AciI	CCGC	8 cut(s)	93, 132, 147, 192, 207, 213, 245, 280
AcuI	CTGAAG	1 cut(s)	576
AfaI	GTAC	1 cut(s)	330
AfiI	CCNNNNNNNGG	3 cut(s)	213, 557, 568
AgsI	TTSAA	3 cut(s)	28, 337, 508
AhdI	GACNNNNNGTC	1 cut(s)	13
AluBI	AGCT	4 cut(s)	303, 377, 541, 545
AluI	AGCT	4 cut(s)	303, 377, 541, 545
Alw26I	GTCTC	4 cut(s)	73, 133, 193, 449
Ama87I	CYCGRG	1 cut(s)	312
AoxI	GGCC	1 cut(s)	559
ApeKI	GCWGC	1 cut(s)	40
AspLEI	GCGC	1 cut(s)	201
AsuHPI	GGTGA	3 cut(s)	95, 218, 516
AsuNHI	GCTAGC	2 cut(s)	209, 541
AvaI	CYCGRG	1 cut(s)	312
BanII	GRGCYC	1 cut(s)	441
BbsI	GAAGAC	1 cut(s)	158
BbvI	GCAGC	1 cut(s)	52
BceAI	ACGGC	1 cut(s)	258
BcoDI	GTCTC	4 cut(s)	73, 133, 193, 449
BfaI	CTAG	4 cut(s)	90, 150, 210, 542
BisI	GCNGC	2 cut(s)	41, 246
BlpI	GCTNAGC	3 cut(s)	75, 135, 546
BlsI	GCNGC	2 cut(s)	42, 247
BmeRI	GACNNNNNGTC	1 cut(s)	13
BmeT110I	CYCGRG	1 cut(s)	312
BmiI	GGNNCC	2 cut(s)	249, 386
BmtI	GCTAGC	2 cut(s)	213, 545
BoxI	GACNNNNGTC	1 cut(s)	410
BpiI	GAAGAC	1 cut(s)	158
BplI	GAGNNNNNCTC	6 cut(s)	53, 85, 113, 145, 173, 205
BpmI	CTGGAG	2 cut(s)	234, 447
Bpu1102I	GCTNAGC	3 cut(s)	75, 135, 546
BsaJI	CCNNGG	1 cut(s)	311
BsaXI	ACNNNNNCTCC	2 cut(s)	232, 262
Bsc4I	CCNNNNNNNGG	3 cut(s)	213, 557, 568
Bse1I	ACTGG	1 cut(s)	430
Bse3DI	GCAATG	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	311
BseLI	CCNNNNNNNGG	3 cut(s)	213, 557, 568
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	1 cut(s)	560
BseNI	ACTGG	1 cut(s)	430
BseXI	GCAGC	1 cut(s)	52
Bsh1236I	CGCG	1 cut(s)	199
BshFI	GGCC	1 cut(s)	561
BsiHKCI	CYCGRG	1 cut(s)	312
BslFI	GGGAC	1 cut(s)	229
BslI	CCNNNNNNNGG	3 cut(s)	213, 557, 568
BsmAI	GTCTC	4 cut(s)	73, 133, 193, 449
BsmFI	GGGAC	1 cut(s)	229
BsnI	GGCC	1 cut(s)	561
BsoBI	CYCGRG	1 cut(s)	312
Bsp1286I	GDGCHC	1 cut(s)	441
Bsp143I	GATC	1 cut(s)	580
Bsp1720I	GCTNAGC	3 cut(s)	75, 135, 546
BspACI	CCGC	8 cut(s)	93, 132, 147, 192, 207, 213, 245, 280
BspANI	GGCC	1 cut(s)	561
BspCNI	CTCAG	1 cut(s)	559
BspFNI	CGCG	1 cut(s)	199
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	2 cut(s)	249, 386
BspOI	GCTAGC	2 cut(s)	213, 545
BsrDI	GCAATG	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	430
BssECI	CCNNGG	1 cut(s)	311
BssMI	GATC	1 cut(s)	580
Bst4CI	ACNGT	3 cut(s)	32, 333, 342
Bst6I	CTCTTC	2 cut(s)	452, 561
BstC8I	GCNNGC	3 cut(s)	211, 459, 543
BstDEI	CTNAG	3 cut(s)	75, 135, 546
BstFNI	CGCG	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	201
BstKTI	GATC	1 cut(s)	583
BstMAI	GTCTC	4 cut(s)	73, 133, 193, 449
BstMBI	GATC	1 cut(s)	580
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 254, 547
BstPAI	GACNNNNGTC	1 cut(s)	410
BstUI	CGCG	1 cut(s)	199
BstV1I	GCAGC	1 cut(s)	52
BstV2I	GAAGAC	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	561
Cac8I	GCNNGC	3 cut(s)	211, 459, 543
CciI	TCATGA	1 cut(s)	418
CfoI	GCGC	1 cut(s)	201
Csp6I	GTAC	1 cut(s)	329
CviAII	CATG	4 cut(s)	403, 419, 454, 563
CviQI	GTAC	1 cut(s)	329
DdeI	CTNAG	3 cut(s)	75, 135, 546
DpnI	GATC	1 cut(s)	582
DpnII	GATC	1 cut(s)	580
DriI	GACNNNNNGTC	1 cut(s)	13
Eam1104I	CTCTTC	2 cut(s)	452, 561
Eam1105I	GACNNNNNGTC	1 cut(s)	13
EarI	CTCTTC	2 cut(s)	452, 561
Eco24I	GRGCYC	1 cut(s)	441
Eco57I	CTGAAG	1 cut(s)	576
Eco88I	CYCGRG	1 cut(s)	312
EcoT38I	GRGCYC	1 cut(s)	441
FaeI	CATG	4 cut(s)	406, 422, 457, 566
FaiI	YATR	8 cut(s)	46, 267, 404, 420, 455, 480, 518, 564
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	4 cut(s)	402, 418, 453, 562
FauI	CCCGC	1 cut(s)	206
Fnu4HI	GCNGC	2 cut(s)	41, 246
FriOI	GRGCYC	1 cut(s)	441
Fsp4HI	GCNGC	2 cut(s)	41, 246
FspBI	CTAG	4 cut(s)	90, 150, 210, 542
GlaI	GCGC	1 cut(s)	200
GluI	GCNGC	2 cut(s)	41, 246
GsuI	CTGGAG	2 cut(s)	234, 447
HaeIII	GGCC	1 cut(s)	561
HhaI	GCGC	1 cut(s)	201
Hin1II	CATG	4 cut(s)	406, 422, 457, 566
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HphI	GGTGA	3 cut(s)	95, 218, 516
Hpy188I	TCNGA	3 cut(s)	7, 36, 585
Hpy188III	TCNNGA	4 cut(s)	251, 314, 362, 419
HpyAV	CCTTC	2 cut(s)	551, 567
HpyCH4III	ACNGT	3 cut(s)	32, 333, 342
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	3 cut(s)	239, 295, 461
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 254, 547
HpyF3I	CTNAG	3 cut(s)	75, 135, 546
HpySE526I	ACGT	1 cut(s)	14
Hsp92II	CATG	4 cut(s)	406, 422, 457, 566
HspAI	GCGC	1 cut(s)	199
Kzo9I	GATC	1 cut(s)	580
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	7 cut(s)	264, 375, 387, 411, 421, 454, 567
Lsp1109I	GCAGC	1 cut(s)	52
MaeI	CTAG	4 cut(s)	90, 150, 210, 542
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	2 cut(s)	140, 522
MalI	GATC	1 cut(s)	582
MboI	GATC	1 cut(s)	580
MboII	GAAGA	4 cut(s)	158, 439, 520, 578
MfeI	CAATTG	1 cut(s)	503
MhlI	GDGCHC	1 cut(s)	441
MluCI	AATT	3 cut(s)	23, 463, 503
MnlI	CCTC	7 cut(s)	232, 247, 273, 321, 375, 481, 562
MseI	TTAA	1 cut(s)	108
MspA1I	CMGCKG	1 cut(s)	377
MunI	CAATTG	1 cut(s)	503
MvnI	CGCG	1 cut(s)	199
MwoI	GCNNNNNNNGC	3 cut(s)	245, 254, 547
NdeII	GATC	1 cut(s)	580
NheI	GCTAGC	2 cut(s)	209, 541
NlaIII	CATG	4 cut(s)	406, 422, 457, 566
NlaIV	GGNNCC	2 cut(s)	249, 386
NmuCI	GTSAC	1 cut(s)	522
PagI	TCATGA	1 cut(s)	418
PkrI	GCNGC	2 cut(s)	42, 247
PshAI	GACNNNNGTC	1 cut(s)	410
PspN4I	GGNNCC	2 cut(s)	249, 386
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	1 cut(s)	330
RsaNI	GTAC	1 cut(s)	329
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	2 cut(s)	41, 246
Sau3AI	GATC	1 cut(s)	580
SduI	GDGCHC	1 cut(s)	441
Sse9I	AATT	3 cut(s)	23, 463, 503
SsiI	CCGC	8 cut(s)	93, 132, 147, 192, 207, 213, 245, 280
SspMI	CTAG	4 cut(s)	90, 150, 210, 542
TaaI	ACNGT	3 cut(s)	32, 333, 342
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	1 cut(s)	53
TasI	AATT	3 cut(s)	23, 463, 503
TauI	GCSGC	1 cut(s)	248
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TseFI	GTSAC	1 cut(s)	522
TseI	GCWGC	1 cut(s)	40
Tsp45I	GTSAC	1 cut(s)	522
TspDTI	ATGAA	3 cut(s)	158, 435, 579
TspGWI	ACGGA	1 cut(s)	409
XspI	CTAG	4 cut(s)	90, 150, 210, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.