Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000144.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1881

Gene Structure 1880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 713 bp

atggtccccgtcgccactcggaatccggcctttacttatgggctgacaaccgaaacctactacatcgacgagtccgacgaccacatcacagggacggggtttttcagagcagcctccacttcttttcactccttcttttcttccatagccgattctactcctccaatgggcaagtcaagcaagaagtcagccaccaaagttgaagcagctcctgctgctgtagttccagtctccaagtctggcaagaaaggcaagagggaagccgagaatgaaatcgagaaggcagtgagtgcgaagaagcagaagagagacgagggtgtggtgcaggccatccagaagacgaaggccgaagcgaagacgccgcaaaagaagaagaaagaagagagcagtagtgaggaggagtctgacacttcttcatcagaggatgagaagcctgctcctaaaaccaaaactgttgttcctcccaagaagcaggccatagttgctaagaatggtactgccaagaaggaagagtccagcagttctgaatcagagtctgactctgactctgatgaggatgaaaaacctgctaccaaaactggagatgctgctaaaaacgggacagttgctaagaaagccgagtcttctgacagttcagattcttcagaagatgattccgatgaggatgatgttcctaaatccaaagccacaaaattgcctcaagttgtggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

237

Amino Acids

25.18

Weight (kDa)

5.39

Isoelectric Point (pI)

59.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	574
AciI	CCGC	1 cut(s)	362
AcuI	CTGAAG	1 cut(s)	627
AcyI	GRCGYC	1 cut(s)	359
AfaI	GTAC	1 cut(s)	496
AfiI	CCNNNNNNNGG	1 cut(s)	167
AgsI	TTSAA	1 cut(s)	203
AluBI	AGCT	1 cut(s)	209
AluI	AGCT	1 cut(s)	209
Alw26I	GTCTC	2 cut(s)	235, 303
AlwNI	CAGNNNCTG	2 cut(s)	212, 536
AoxI	GGCC	4 cut(s)	27, 327, 345, 474
ApeKI	GCWGC	4 cut(s)	110, 206, 215, 587
AspS9I	GGNCC	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	4
BbsI	GAAGAC	3 cut(s)	344, 362, 615
BbvI	GCAGC	4 cut(s)	122, 202, 218, 574
BccI	CCATC	1 cut(s)	338
BcoDI	GTCTC	2 cut(s)	235, 303
BfmI	CTRYAG	1 cut(s)	219
BfuAI	ACCTGC	1 cut(s)	574
BisI	GCNGC	5 cut(s)	111, 207, 216, 362, 588
BlsI	GCNGC	5 cut(s)	112, 208, 217, 363, 589
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	574
BpiI	GAAGAC	3 cut(s)	344, 362, 615
BplI	GAGNNNNNCTC	2 cut(s)	524, 556
BpmI	CTGGAG	1 cut(s)	600
BpuEI	CTTGAG	1 cut(s)	684
BsaHI	GRCGYC	1 cut(s)	359
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse1I	ACTGG	2 cut(s)	227, 583
BseGI	GGATG	4 cut(s)	330, 430, 562, 670
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseNI	ACTGG	2 cut(s)	227, 583
BseRI	GAGGAG	3 cut(s)	150, 410, 413
BseXI	GCAGC	4 cut(s)	122, 202, 218, 574
BsgI	GTGCAG	1 cut(s)	344
BshFI	GGCC	4 cut(s)	29, 329, 347, 476
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	2 cut(s)	106, 613
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmAI	GTCTC	2 cut(s)	235, 303
BsmBI	CGTCTC	1 cut(s)	303
BsmFI	GGGAC	2 cut(s)	106, 613
BsnI	GGCC	4 cut(s)	29, 329, 347, 476
BspACI	CCGC	1 cut(s)	362
BspANI	GGCC	4 cut(s)	29, 329, 347, 476
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	574
BsrI	ACTGG	2 cut(s)	227, 583
BssNI	GRCGYC	1 cut(s)	359
Bst4CI	ACNGT	3 cut(s)	454, 604, 632
Bst6I	CTCTTC	3 cut(s)	299, 375, 504
BstACI	GRCGYC	1 cut(s)	359
BstAPI	GCANNNNNTGC	2 cut(s)	212, 290
BstC8I	GCNNGC	3 cut(s)	327, 435, 474
BstDEI	CTNAG	2 cut(s)	486, 609
BstF5I	GGATG	4 cut(s)	330, 430, 562, 670
BstMAI	GTCTC	2 cut(s)	235, 303
BstMWI	GCNNNNNNNGC	7 cut(s)	177, 212, 215, 249, 290, 482, 614
BstSFI	CTRYAG	1 cut(s)	219
BstV1I	GCAGC	4 cut(s)	122, 202, 218, 574
BstV2I	GAAGAC	3 cut(s)	344, 362, 615
BsuRI	GGCC	4 cut(s)	29, 329, 347, 476
BtsCI	GGATG	4 cut(s)	330, 430, 562, 670
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	1 cut(s)	291
BveI	ACCTGC	1 cut(s)	574
Cac8I	GCNNGC	3 cut(s)	327, 435, 474
CaiI	CAGNNNCTG	2 cut(s)	212, 536
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	367
Csp6I	GTAC	1 cut(s)	495
CspCI	CAANNNNNGTGG	2 cut(s)	181, 216
CviQI	GTAC	1 cut(s)	495
DdeI	CTNAG	2 cut(s)	486, 609
Eam1104I	CTCTTC	3 cut(s)	299, 375, 504
EarI	CTCTTC	3 cut(s)	299, 375, 504
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	1 cut(s)	627
Esp3I	CGTCTC	1 cut(s)	303
FaiI	YATR	3 cut(s)	39, 146, 479
FaqI	GGGAC	2 cut(s)	106, 613
Fnu4HI	GCNGC	5 cut(s)	111, 207, 216, 362, 588
FokI	GGATG	4 cut(s)	317, 437, 569, 677
Fsp4HI	GCNGC	5 cut(s)	111, 207, 216, 362, 588
GluI	GCNGC	5 cut(s)	111, 207, 216, 362, 588
GsuI	CTGGAG	1 cut(s)	600
HaeIII	GGCC	4 cut(s)	29, 329, 347, 476
HapII	CCGG	1 cut(s)	26
HgaI	GACGC	1 cut(s)	367
Hin1I	GRCGYC	1 cut(s)	359
HpaII	CCGG	1 cut(s)	26
Hpy188III	TCNNGA	2 cut(s)	277, 334
Hpy99I	CGWCG	3 cut(s)	14, 71, 80
HpyAV	CCTTC	4 cut(s)	142, 274, 337, 499
HpyCH4III	ACNGT	3 cut(s)	454, 604, 632
HpyCH4V	TGCA	1 cut(s)	325
HpyF10VI	GCNNNNNNNGC	7 cut(s)	177, 212, 215, 249, 290, 482, 614
HpyF3I	CTNAG	2 cut(s)	486, 609
Hsp92I	GRCGYC	1 cut(s)	359
LmnI	GCTCC	2 cut(s)	214, 442
Lsp1109I	GCAGC	4 cut(s)	122, 202, 218, 574
LweI	GCATC	1 cut(s)	574
MluCI	AATT	1 cut(s)	692
MlyI	GAGTC	7 cut(s)	80, 410, 521, 533, 539, 542, 629
MmeI	TCCRAC	1 cut(s)	99
MspI	CCGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	7 cut(s)	177, 212, 215, 249, 290, 482, 614
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	2 cut(s)	289, 643
PcsI	WCGNNNNNNNCGW	2 cut(s)	72, 75
PfeI	GAWTC	5 cut(s)	22, 152, 527, 638, 653
PkrI	GCNGC	5 cut(s)	112, 208, 217, 363, 589
PleI	GAGTC	7 cut(s)	79, 409, 520, 533, 539, 541, 628
PpsI	GAGTC	7 cut(s)	79, 409, 520, 533, 539, 541, 628
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	4
PstNI	CAGNNNCTG	2 cut(s)	212, 536
RsaI	GTAC	1 cut(s)	496
RsaNI	GTAC	1 cut(s)	495
SatI	GCNGC	5 cut(s)	111, 207, 216, 362, 588
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	7 cut(s)	80, 410, 521, 533, 539, 542, 629
SetI	ASST	3 cut(s)	59, 211, 568
SfaNI	GCATC	1 cut(s)	574
SfcI	CTRYAG	1 cut(s)	219
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	699
SmoI	CTYRAG	1 cut(s)	699
Sse9I	AATT	1 cut(s)	692
SsiI	CCGC	1 cut(s)	362
TaaI	ACNGT	3 cut(s)	454, 604, 632
TaqI	TCGA	2 cut(s)	66, 276
TasI	AATT	1 cut(s)	692
TauI	GCSGC	1 cut(s)	364
TfiI	GAWTC	5 cut(s)	22, 152, 527, 638, 653
TscAI	CASTG	1 cut(s)	291
TseI	GCWGC	4 cut(s)	110, 206, 215, 587
TspDTI	ATGAA	3 cut(s)	285, 405, 573
TspRI	CASTG	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	4

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.