Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000144.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

77290 .. 78418

Gene Structure 1129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atgcagagagcaaagggttttgaagcagcttggaagaggtgtgtgaatcagcatcacagagccttttctgctcagccaaactatgcccaacatcaccacgatgacccccaagacctggtcacggttgaggggaggaccaaatcaagagcagccattctcaatagaccatctgcactaaatgccctcaatactgctatggtatctcgcctcaagagactttatgaatcatgggaagataacccggatattggttttgtcttgatgaagccaagacaatcatggtccatgttaacaagcttgaggttgtttcttggccagcaaggtagaacatcttgcattcctcaaccacagattataacaacaattagaacgaagcagagggagactgacttgcttgattcgaaaagaggccgagatgcgttctgtgagagggagatcgaacagagggagactggttggatgcgttctgtgattggatgggttctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

162

Amino Acids

18.82

Weight (kDa)

9.93

Isoelectric Point (pI)

46.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	49 - 89	3.8e-09	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	356
AccB7I	CCANNNNNTGG	1 cut(s)	115
AcoI	YGGCCR	1 cut(s)	313
AfiI	CCNNNNNNNGG	3 cut(s)	115, 121, 248
AgsI	TTSAA	1 cut(s)	23
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	2 cut(s)	29, 297
AluI	AGCT	2 cut(s)	29, 297
Alw26I	GTCTC	3 cut(s)	208, 377, 443
AoxI	GGCC	2 cut(s)	313, 409
ApeKI	GCWGC	2 cut(s)	26, 149
AspS9I	GGNCC	2 cut(s)	135, 282
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	1 cut(s)	86
AsuII	TTCGAA	1 cut(s)	401
AvaII	GGWCC	2 cut(s)	135, 282
BalI	TGGCCA	1 cut(s)	315
BbvI	GCAGC	2 cut(s)	38, 161
BccI	CCATC	2 cut(s)	175, 471
BciT130I	CCWGG	1 cut(s)	116
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	3 cut(s)	208, 377, 443
BisI	GCNGC	2 cut(s)	27, 150
BlpI	GCTNAGC	1 cut(s)	72
BlsI	GCNGC	2 cut(s)	28, 151
Bme1390I	CCNGG	2 cut(s)	116, 242
Bme18I	GGWCC	2 cut(s)	135, 282
BmgT120I	GGNCC	2 cut(s)	135, 282
BmrFI	CCNGG	2 cut(s)	116, 242
BmsI	GCATC	3 cut(s)	61, 406, 450
Bpu1102I	GCTNAGC	1 cut(s)	72
Bpu14I	TTCGAA	1 cut(s)	401
BpuEI	CTTGAG	2 cut(s)	194, 319
BpuMI	CCSGG	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 121, 248
Bse1I	ACTGG	1 cut(s)	457
BseBI	CCWGG	1 cut(s)	116
BseGI	GGATG	2 cut(s)	465, 482
BseLI	CCNNNNNNNGG	3 cut(s)	115, 121, 248
BseMII	CTCAG	1 cut(s)	86
BseNI	ACTGG	1 cut(s)	457
BseXI	GCAGC	2 cut(s)	38, 161
BsgI	GTGCAG	1 cut(s)	156
BshFI	GGCC	2 cut(s)	315, 411
BsiSI	CCGG	1 cut(s)	242
BslI	CCNNNNNNNGG	3 cut(s)	115, 121, 248
BsmAI	GTCTC	3 cut(s)	208, 377, 443
BsmI	GAATGC	1 cut(s)	336
BsnI	GGCC	2 cut(s)	315, 411
Bsp119I	TTCGAA	1 cut(s)	401
Bsp143I	GATC	1 cut(s)	435
Bsp1720I	GCTNAGC	1 cut(s)	72
BspANI	GGCC	2 cut(s)	315, 411
BspCNI	CTCAG	1 cut(s)	85
BspT104I	TTCGAA	1 cut(s)	401
BsrI	ACTGG	1 cut(s)	457
BssMI	GATC	1 cut(s)	435
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	1 cut(s)	29
BstAPI	GCANNNNNTGC	1 cut(s)	179
BstBI	TTCGAA	1 cut(s)	401
BstC8I	GCNNGC	1 cut(s)	317
BstDEI	CTNAG	1 cut(s)	72
BstF5I	GGATG	2 cut(s)	465, 482
BstKTI	GATC	1 cut(s)	438
BstMAI	GTCTC	3 cut(s)	208, 377, 443
BstMBI	GATC	1 cut(s)	435
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 179
BstNI	CCWGG	1 cut(s)	116
BstSCI	CCNGG	2 cut(s)	114, 240
BstV1I	GCAGC	2 cut(s)	38, 161
BsuRI	GGCC	2 cut(s)	315, 411
BtsCI	GGATG	2 cut(s)	465, 482
Cac8I	GCNNGC	1 cut(s)	317
Cfr13I	GGNCC	2 cut(s)	135, 282
CsiI	ACCWGGT	1 cut(s)	114
CviAII	CATG	3 cut(s)	228, 279, 286
CviJI	RGCY	8 cut(s)	29, 62, 76, 152, 268, 297, 315, 411
CviKI_1	RGCY	8 cut(s)	29, 62, 76, 152, 268, 297, 315, 411
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	1 cut(s)	437
DpnII	GATC	1 cut(s)	435
EaeI	YGGCCR	1 cut(s)	313
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco47I	GGWCC	2 cut(s)	135, 282
EcoRII	CCWGG	1 cut(s)	114
FaeI	CATG	3 cut(s)	231, 282, 289
FaiI	YATR	7 cut(s)	84, 197, 222, 229, 280, 287, 356
FatI	CATG	3 cut(s)	227, 278, 285
Fnu4HI	GCNGC	2 cut(s)	27, 150
FokI	GGATG	1 cut(s)	472
Fsp4HI	GCNGC	2 cut(s)	27, 150
GluI	GCNGC	2 cut(s)	27, 150
HaeIII	GGCC	2 cut(s)	315, 411
HapII	CCGG	1 cut(s)	242
Hin1II	CATG	3 cut(s)	231, 282, 289
HincII	GTYRAC	1 cut(s)	291
HindII	GTYRAC	1 cut(s)	291
HindIII	AAGCTT	1 cut(s)	295
HinfI	GANTC	3 cut(s)	46, 224, 398
HpaI	GTTAAC	1 cut(s)	291
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188III	TCNNGA	3 cut(s)	144, 211, 259
Hpy8I	GTNNAC	1 cut(s)	291
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4V	TGCA	3 cut(s)	4, 173, 336
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 179
HpyF3I	CTNAG	1 cut(s)	72
Hsp92II	CATG	3 cut(s)	231, 282, 289
KspAI	GTTAAC	1 cut(s)	291
Kzo9I	GATC	1 cut(s)	435
LpnPI	CCDG	5 cut(s)	101, 128, 255, 329, 438
Lsp1109I	GCAGC	2 cut(s)	38, 161
LweI	GCATC	3 cut(s)	61, 406, 450
MabI	ACCWGGT	1 cut(s)	114
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	1 cut(s)	437
MboI	GATC	1 cut(s)	435
MboII	GAAGA	2 cut(s)	46, 245
MlsI	TGGCCA	1 cut(s)	315
MluCI	AATT	1 cut(s)	363
MluNI	TGGCCA	1 cut(s)	315
MmeI	TCCRAC	1 cut(s)	437
Mox20I	TGGCCA	1 cut(s)	315
MscI	TGGCCA	1 cut(s)	315
MseI	TTAA	1 cut(s)	290
MslI	CAYNNNNRTG	1 cut(s)	99
Msp20I	TGGCCA	1 cut(s)	315
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	2 cut(s)	116, 242
Mva1269I	GAATGC	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	2 cut(s)	68, 179
NciI	CCSGG	1 cut(s)	242
NdeII	GATC	1 cut(s)	435
NlaIII	CATG	3 cut(s)	231, 282, 289
NmeAIII	GCCGAG	1 cut(s)	437
NmuCI	GTSAC	1 cut(s)	118
NspV	TTCGAA	1 cut(s)	401
PctI	GAATGC	1 cut(s)	336
PfeI	GAWTC	3 cut(s)	46, 224, 398
PflFI	GACNNNGTC	1 cut(s)	116
PflMI	CCANNNNNTGG	1 cut(s)	115
PkrI	GCNGC	2 cut(s)	28, 151
PsiI	TTATAA	1 cut(s)	356
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PspPI	GGNCC	2 cut(s)	135, 282
PsyI	GACNNNGTC	1 cut(s)	116
RseI	CAYNNNNRTG	1 cut(s)	99
SaqAI	TTAA	1 cut(s)	290
SatI	GCNGC	2 cut(s)	27, 150
Sau3AI	GATC	1 cut(s)	435
Sau96I	GGNCC	2 cut(s)	135, 282
ScrFI	CCNGG	2 cut(s)	116, 242
SetI	ASST	6 cut(s)	31, 41, 117, 299, 305, 325
SexAI	ACCWGGT	1 cut(s)	114
SfaNI	GCATC	3 cut(s)	61, 406, 450
SfuI	TTCGAA	1 cut(s)	401
SinI	GGWCC	2 cut(s)	135, 282
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	2 cut(s)	209, 298
SmoI	CTYRAG	2 cut(s)	209, 298
Sse9I	AATT	1 cut(s)	363
StyD4I	CCNGG	2 cut(s)	114, 240
TaaI	ACNGT	1 cut(s)	124
TaqI	TCGA	2 cut(s)	401, 438
TasI	AATT	1 cut(s)	363
TfiI	GAWTC	3 cut(s)	46, 224, 398
Tru1I	TTAA	1 cut(s)	290
Tru9I	TTAA	1 cut(s)	290
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	2 cut(s)	26, 149
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	2 cut(s)	237, 278
Tth111I	GACNNNGTC	1 cut(s)	116
Van91I	CCANNNNNTGG	1 cut(s)	115
VpaK11BI	GGWCC	2 cut(s)	135, 282
XcmI	CCANNNNNNNNNTGG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.