Rmu_ssc0000152.1_g000017

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000152.1
N/A
Physical Location & Seq
Forward (+)
93131 .. 93481
351 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 351 bp
atgagtaacctgaacaaattggactttgctcaattgagaacatttggctctggatatcacaggtgggttcatgatgtctgccagcatctcaaggctgatggaatcctagatatgattctcgagcctagtcaggacgtgctaaatgttgagcaagctcaagctttggaagcaaatagagcagtcttagaggcaaataaggcgaaagccatcatccaaatgactcttcatatggatgattcgctccagtacgagtgtatgaatgaagaagaccccagaaggctatgggtctcactcaaagaaagatttggcaacgtccgtgactccctgtttcttgacctagaagtgagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

116

Amino Acids

13.46

Weight (kDa)

5.1

Isoelectric Point (pI)

52.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 248
AjiI CACGTC 1 cut(s) 136
AjuI GAANNNNNNNTTGG 2 cut(s) 207, 239
AluBI AGCT 2 cut(s) 155, 161
AluI AGCT 2 cut(s) 155, 161
Alw26I GTCTC 1 cut(s) 292
Ama87I CYCGRG 1 cut(s) 119
AvaI CYCGRG 1 cut(s) 119
BbsI GAAGAC 1 cut(s) 273
BccI CCATC 2 cut(s) 92, 215
BcoDI GTCTC 1 cut(s) 292
BfaI CTAG 3 cut(s) 107, 126, 338
BmeT110I CYCGRG 1 cut(s) 119
BmgBI CACGTC 1 cut(s) 136
BmsI GCATC 1 cut(s) 94
BpiI GAAGAC 1 cut(s) 273
BpmI CTGGAG 1 cut(s) 227
BpuEI CTTGAG 2 cut(s) 74, 141
BsaI GGTCTC 1 cut(s) 292
Bse1I ACTGG 1 cut(s) 244
BseGI GGATG 2 cut(s) 210, 238
BseNI ACTGG 1 cut(s) 244
BsiHKCI CYCGRG 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 292
Bso31I GGTCTC 1 cut(s) 292
BsoBI CYCGRG 1 cut(s) 119
BspHI TCATGA 1 cut(s) 70
BspTNI GGTCTC 1 cut(s) 292
BsrI ACTGG 1 cut(s) 244
Bst6I CTCTTC 1 cut(s) 228
BstC8I GCNNGC 2 cut(s) 83, 153
BstDEI CTNAG 1 cut(s) 184
BstF5I GGATG 2 cut(s) 210, 238
BstMAI GTCTC 1 cut(s) 292
BstMWI GCNNNNNNNGC 3 cut(s) 167, 176, 197
BstV2I GAAGAC 1 cut(s) 273
BtrI CACGTC 1 cut(s) 136
BtsCI GGATG 2 cut(s) 210, 238
Cac8I GCNNGC 2 cut(s) 83, 153
CciI TCATGA 1 cut(s) 70
Csp6I GTAC 1 cut(s) 247
CviAII CATG 1 cut(s) 71
CviJI RGCY 7 cut(s) 48, 95, 124, 155, 161, 206, 280
CviKI_1 RGCY 7 cut(s) 48, 95, 124, 155, 161, 206, 280
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 1 cut(s) 184
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Eco31I GGTCTC 1 cut(s) 292
Eco32I GATATC 1 cut(s) 56
Eco88I CYCGRG 1 cut(s) 119
EcoRV GATATC 1 cut(s) 56
FaeI CATG 1 cut(s) 74
FaiI YATR 6 cut(s) 72, 113, 228, 230, 257, 283
FatI CATG 1 cut(s) 70
FauNDI CATATG 1 cut(s) 228
FokI GGATG 2 cut(s) 197, 245
FspBI CTAG 3 cut(s) 107, 126, 338
GsuI CTGGAG 1 cut(s) 227
Hin1II CATG 1 cut(s) 74
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 5 cut(s) 102, 115, 220, 236, 320
Hpy188III TCNNGA 5 cut(s) 51, 71, 119, 131, 332
HpyAV CCTTC 1 cut(s) 270
HpyCH4IV ACGT 2 cut(s) 135, 312
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 176, 197
HpyF3I CTNAG 1 cut(s) 184
HpySE526I ACGT 2 cut(s) 135, 312
Hsp92II CATG 1 cut(s) 74
LmnI GCTCC 1 cut(s) 246
LpnPI CCDG 8 cut(s) 23, 36, 46, 95, 116, 257, 286, 338
LweI GCATC 1 cut(s) 94
MaeI CTAG 3 cut(s) 107, 126, 338
MaeII ACGT 2 cut(s) 135, 312
MaeIII GTNAC 2 cut(s) 5, 317
MboII GAAGA 3 cut(s) 215, 275, 278
MfeI CAATTG 1 cut(s) 32
MluCI AATT 2 cut(s) 17, 32
MlyI GAGTC 2 cut(s) 214, 314
MnlI CCTC 1 cut(s) 181
MslI CAYNNNNRTG 2 cut(s) 215, 231
MunI CAATTG 1 cut(s) 32
MwoI GCNNNNNNNGC 3 cut(s) 167, 176, 197
NdeI CATATG 1 cut(s) 228
NlaIII CATG 1 cut(s) 74
NmuCI GTSAC 1 cut(s) 317
PaeR7I CTCGAG 1 cut(s) 119
PagI TCATGA 1 cut(s) 70
PfeI GAWTC 3 cut(s) 102, 115, 236
PleI GAGTC 2 cut(s) 214, 314
PpsI GAGTC 2 cut(s) 214, 314
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 2 cut(s) 215, 231
SchI GAGTC 2 cut(s) 214, 314
SetI ASST 7 cut(s) 12, 65, 138, 157, 163, 315, 339
SfaNI GCATC 1 cut(s) 94
Sfr274I CTCGAG 1 cut(s) 119
SlaI CTCGAG 1 cut(s) 119
SmiMI CAYNNNNRTG 2 cut(s) 215, 231
SmlI CTYRAG 3 cut(s) 89, 119, 156
SmoI CTYRAG 3 cut(s) 89, 119, 156
Sse9I AATT 2 cut(s) 17, 32
SspMI CTAG 3 cut(s) 107, 126, 338
TaiI ACGT 2 cut(s) 138, 315
TaqI TCGA 1 cut(s) 120
TasI AATT 2 cut(s) 17, 32
TfiI GAWTC 3 cut(s) 102, 115, 236
TseFI GTSAC 1 cut(s) 317
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 4 cut(s) 59, 215, 272, 276
TspGWI ACGGA 1 cut(s) 305
XhoI CTCGAG 1 cut(s) 119
XspI CTAG 3 cut(s) 107, 126, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.