Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000161.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

66941 .. 67344

Gene Structure 404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

atgctagtgggtgattctataatgaggaatcagtgggagtctcttgtgtgcttagtacaaggagttgttccaacaggtcgaaagagagtcacctacaatggtccttctatggcattccatgcaatggactttgggacatcaattgagttttcttgggctccactcctagtagaattgaacaagggagctgcaaacaagaggattttgcatttggatttgatagagaagaatgcaaagtattggagaggagttgatgttcttgtttttgattcagctcactggtggactcactctgacaaaacatcgtcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

103

Amino Acids

11.68

Weight (kDa)

7.94

Isoelectric Point (pI)

33.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	1 - 99	7.1e-28	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	124
AfaI	GTAC	1 cut(s)	57
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	1 cut(s)	178
AloI	GAACNNNNNNTCC	2 cut(s)	240, 272
AluBI	AGCT	2 cut(s)	188, 275
AluI	AGCT	2 cut(s)	188, 275
Alw26I	GTCTC	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	101
AsuHPI	GGTGA	2 cut(s)	23, 82
AvaII	GGWCC	1 cut(s)	101
BanII	GRGCYC	1 cut(s)	160
BbvI	GCAGC	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	45
BfaI	CTAG	2 cut(s)	5, 167
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
Bme18I	GGWCC	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	101
BmiI	GGNNCC	1 cut(s)	159
BsaXI	ACNNNNNCTCC	2 cut(s)	240, 270
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	284
Bse3DI	GCAATG	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMI	GCAATG	1 cut(s)	129
BseNI	ACTGG	1 cut(s)	284
BseRI	GAGGAG	1 cut(s)	261
BseXI	GCAGC	1 cut(s)	175
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	148
BsmI	GAATGC	2 cut(s)	113, 235
Bsp1286I	GDGCHC	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	159
BsrDI	GCAATG	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	284
BstAPI	GCANNNNNTGC	1 cut(s)	119
BstDEI	CTNAG	1 cut(s)	52
BstMAI	GTCTC	1 cut(s)	45
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstV1I	GCAGC	1 cut(s)	175
BtsIMutI	CAGTG	2 cut(s)	38, 277
Cfr13I	GGNCC	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	56
CviAII	CATG	1 cut(s)	119
CviJI	RGCY	3 cut(s)	158, 188, 275
CviKI_1	RGCY	3 cut(s)	158, 188, 275
CviQI	GTAC	1 cut(s)	56
DdeI	CTNAG	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	101
EcoT38I	GRGCYC	1 cut(s)	160
FaeI	CATG	1 cut(s)	122
FaiI	YATR	3 cut(s)	20, 110, 120
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	1 cut(s)	118
Fnu4HI	GCNGC	1 cut(s)	189
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	2 cut(s)	5, 167
GluI	GCNGC	1 cut(s)	189
Hin1II	CATG	1 cut(s)	122
HinfI	GANTC	6 cut(s)	14, 28, 38, 87, 269, 286
HphI	GGTGA	2 cut(s)	23, 82
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	1 cut(s)	295
Hpy8I	GTNNAC	1 cut(s)	285
Hpy99I	CGWCG	1 cut(s)	310
HpyAV	CCTTC	1 cut(s)	114
HpyCH4V	TGCA	4 cut(s)	122, 191, 208, 233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	52
Hsp92II	CATG	1 cut(s)	122
LmnI	GCTCC	2 cut(s)	163, 185
LpnPI	CCDG	2 cut(s)	60, 265
Lsp1109I	GCAGC	1 cut(s)	175
MaeI	CTAG	2 cut(s)	5, 167
MaeIII	GTNAC	1 cut(s)	88
MboII	GAAGA	1 cut(s)	238
MfeI	CAATTG	1 cut(s)	141
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	2 cut(s)	141, 173
MlyI	GAGTC	3 cut(s)	47, 96, 280
MmeI	TCCRAC	1 cut(s)	95
MnlI	CCTC	3 cut(s)	18, 192, 239
MunI	CAATTG	1 cut(s)	141
Mva1269I	GAATGC	2 cut(s)	113, 235
MwoI	GCNNNNNNNGC	1 cut(s)	119
NlaIII	CATG	1 cut(s)	122
NlaIV	GGNNCC	1 cut(s)	159
NmuCI	GTSAC	1 cut(s)	88
PctI	GAATGC	2 cut(s)	113, 235
PfeI	GAWTC	3 cut(s)	14, 28, 269
PflMI	CCANNNNNTGG	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	190
PleI	GAGTC	3 cut(s)	46, 95, 280
PpsI	GAGTC	3 cut(s)	46, 95, 280
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	101
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
SatI	GCNGC	1 cut(s)	189
Sau96I	GGNCC	1 cut(s)	101
SchI	GAGTC	3 cut(s)	47, 96, 280
SduI	GDGCHC	1 cut(s)	160
SetI	ASST	4 cut(s)	79, 95, 190, 277
SinI	GGWCC	1 cut(s)	101
Sse9I	AATT	2 cut(s)	141, 173
SspMI	CTAG	2 cut(s)	5, 167
TaqI	TCGA	1 cut(s)	79
TasI	AATT	2 cut(s)	141, 173
TatI	WGTACW	1 cut(s)	55
TfiI	GAWTC	3 cut(s)	14, 28, 269
TscAI	CASTG	2 cut(s)	38, 284
TseFI	GTSAC	1 cut(s)	88
TseI	GCWGC	1 cut(s)	188
Tsp45I	GTSAC	1 cut(s)	88
TspRI	CASTG	2 cut(s)	38, 284
Van91I	CCANNNNNTGG	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	101
XspI	CTAG	2 cut(s)	5, 167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.