Rmu_ssc0000164.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000164.1
N/A
Physical Location & Seq
Reverse (-)
19708 .. 21391
1684 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 591 bp
atgtcgaatgaacccagactcgactttcccatacttgactcaacaggctcggattaccacagttgggtaaccgatgttgagaaccatctcacttcaaagggaatattacccataatccaggcacttaacccggatcttgtgttagtgcgaacacctacaaagcatgctcaagcaattatcttaatgcgacgccatatggacaaggcactcagattggagtatatgtcgatcaagaatgcaagagagctatgggttcaatggaacaatctgccctttgctgatttcaagtctgttgctgaatataattcagaagctcttcgcatacagtccatgttgagattttgtggacaacttgtcacagagcaagagctaattgagaaaactctctccaccttccccgtttcagccattgtggtatcaaagcaataccgtactgaagtcaatgctggacggatcacgagaacgaagaaaagcaagaaacacgaattggttcgaggagctgcacatgcgccttatggcgccatgattgtgcaaagacaggccatacatggccggcgccgcctaccccctgcggcaaatacatggcattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

196

Amino Acids

22.45

Weight (kDa)

9.89

Isoelectric Point (pI)

47.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 518, 555
AciI CCGC 2 cut(s) 559, 572
AclWI GGATC 2 cut(s) 141, 461
AcoI YGGCCR 1 cut(s) 550
AcuI CTGAAG 1 cut(s) 456
AcyI GRCGYC 3 cut(s) 190, 519, 556
AfaI GTAC 1 cut(s) 433
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 3 cut(s) 96, 257, 286
AhdI GACNNNNNGTC 1 cut(s) 353
AjnI CCWGG 1 cut(s) 117
AjuI GAANNNNNNNTTGG 2 cut(s) 470, 502
AluBI AGCT 4 cut(s) 247, 314, 370, 500
AluI AGCT 4 cut(s) 247, 314, 370, 500
AlwI GGATC 2 cut(s) 141, 461
AoxI GGCC 2 cut(s) 540, 550
ApeKI GCWGC 1 cut(s) 500
Asp700I GAANNNNTTC 2 cut(s) 315, 489
AspLEI GCGC 3 cut(s) 511, 521, 558
AsuC2I CCSGG 1 cut(s) 131
BanI GGYRCC 2 cut(s) 518, 555
BauI CACGAG 1 cut(s) 457
BbvI GCAGC 1 cut(s) 487
BccI CCATC 1 cut(s) 93
BciT130I CCWGG 1 cut(s) 119
BcnI CCSGG 1 cut(s) 131
BfoI RGCGCY 2 cut(s) 522, 559
BisI GCNGC 3 cut(s) 501, 559, 573
BlsI GCNGC 3 cut(s) 502, 560, 574
Bme1390I CCNGG 2 cut(s) 119, 131
BmeRI GACNNNNNGTC 1 cut(s) 353
BmiI GGNNCC 2 cut(s) 520, 557
BmrFI CCNGG 2 cut(s) 119, 131
BpuEI CTTGAG 1 cut(s) 153
BpuMI CCSGG 1 cut(s) 131
BsaHI GRCGYC 3 cut(s) 190, 519, 556
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse118I RCCGGY 1 cut(s) 552
BseBI CCWGG 1 cut(s) 119
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 223
BseRI GAGGAG 1 cut(s) 510
BseXI GCAGC 1 cut(s) 487
BsgI GTGCAG 1 cut(s) 486
BshFI GGCC 2 cut(s) 542, 552
BshNI GGYRCC 2 cut(s) 518, 555
BsiSI CCGG 2 cut(s) 131, 553
BslI CCNNNNNNNGG 1 cut(s) 64
BsmI GAATGC 1 cut(s) 241
BsnI GGCC 2 cut(s) 542, 552
Bsp143I GATC 3 cut(s) 133, 228, 453
BspACI CCGC 2 cut(s) 559, 572
BspANI GGCC 2 cut(s) 542, 552
BspCNI CTCAG 1 cut(s) 222
BspLI GGNNCC 2 cut(s) 520, 557
BspPI GGATC 2 cut(s) 141, 461
BspQI GCTCTTC 1 cut(s) 321
BspT107I GGYRCC 2 cut(s) 518, 555
BsrFI RCCGGY 1 cut(s) 552
BssAI RCCGGY 1 cut(s) 552
BssMI GATC 3 cut(s) 133, 228, 453
BssNI GRCGYC 3 cut(s) 190, 519, 556
BssSI CACGAG 1 cut(s) 457
Bst2BI CACGAG 1 cut(s) 457
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 3 cut(s) 62, 327, 431
Bst6I CTCTTC 1 cut(s) 321
BstACI GRCGYC 3 cut(s) 190, 519, 556
BstC8I GCNNGC 2 cut(s) 165, 554
BstDEI CTNAG 1 cut(s) 209
BstEII GGTNACC 1 cut(s) 67
BstH2I RGCGCY 2 cut(s) 522, 559
BstHHI GCGC 3 cut(s) 511, 521, 558
BstKTI GATC 3 cut(s) 136, 231, 456
BstMBI GATC 3 cut(s) 133, 228, 453
BstMWI GCNNNNNNNGC 2 cut(s) 506, 558
BstNI CCWGG 1 cut(s) 119
BstNSI RCATGY 2 cut(s) 167, 509
BstPI GGTNACC 1 cut(s) 67
BstSCI CCNGG 2 cut(s) 117, 129
BstV1I GCAGC 1 cut(s) 487
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BsuRI GGCC 2 cut(s) 542, 552
Cac8I GCNNGC 2 cut(s) 165, 554
CfoI GCGC 3 cut(s) 511, 521, 558
Cfr10I RCCGGY 1 cut(s) 552
CseI GACGC 1 cut(s) 198
Csp6I GTAC 1 cut(s) 432
CviAII CATG 6 cut(s) 164, 331, 506, 523, 548, 582
CviJI RGCY 8 cut(s) 48, 247, 314, 370, 407, 500, 542, 552
CviKI_1 RGCY 8 cut(s) 48, 247, 314, 370, 407, 500, 542, 552
CviQI GTAC 1 cut(s) 432
DdeI CTNAG 1 cut(s) 209
DinI GGCGCC 2 cut(s) 520, 557
DpnI GATC 3 cut(s) 135, 230, 455
DpnII GATC 3 cut(s) 133, 228, 453
DriI GACNNNNNGTC 1 cut(s) 353
EaeI YGGCCR 1 cut(s) 550
Eam1104I CTCTTC 1 cut(s) 321
Eam1105I GACNNNNNGTC 1 cut(s) 353
EarI CTCTTC 1 cut(s) 321
Eco57I CTGAAG 1 cut(s) 456
Eco91I GGTNACC 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 117
EgeI GGCGCC 2 cut(s) 520, 557
EheI GGCGCC 2 cut(s) 520, 557
FaeI CATG 6 cut(s) 167, 334, 509, 526, 551, 585
FatI CATG 6 cut(s) 163, 330, 505, 522, 547, 581
FauNDI CATATG 1 cut(s) 195
Fnu4HI GCNGC 3 cut(s) 501, 559, 573
Fsp4HI GCNGC 3 cut(s) 501, 559, 573
GlaI GCGC 3 cut(s) 510, 520, 557
GluI GCNGC 3 cut(s) 501, 559, 573
HaeII RGCGCY 2 cut(s) 522, 559
HaeIII GGCC 2 cut(s) 542, 552
HapII CCGG 2 cut(s) 131, 553
HgaI GACGC 1 cut(s) 198
HhaI GCGC 3 cut(s) 511, 521, 558
Hin1I GRCGYC 3 cut(s) 190, 519, 556
Hin1II CATG 6 cut(s) 167, 334, 509, 526, 551, 585
Hin6I GCGC 3 cut(s) 509, 519, 556
HinP1I GCGC 3 cut(s) 509, 519, 556
HinfI GANTC 2 cut(s) 18, 38
HpaII CCGG 2 cut(s) 131, 553
Hpy166II GTNNAC 1 cut(s) 347
Hpy188I TCNGA 3 cut(s) 52, 212, 310
Hpy188III TCNNGA 2 cut(s) 232, 457
Hpy8I GTNNAC 1 cut(s) 347
Hpy99I CGWCG 1 cut(s) 192
HpyAV CCTTC 1 cut(s) 403
HpyCH4III ACNGT 3 cut(s) 62, 327, 431
HpyCH4V TGCA 3 cut(s) 239, 503, 532
HpyF10VI GCNNNNNNNGC 2 cut(s) 506, 558
HpyF3I CTNAG 1 cut(s) 209
Hsp92I GRCGYC 3 cut(s) 190, 519, 556
Hsp92II CATG 6 cut(s) 167, 334, 509, 526, 551, 585
HspAI GCGC 3 cut(s) 509, 519, 556
KasI GGCGCC 2 cut(s) 518, 555
KroI GCCGGC 1 cut(s) 552
KroNI GCCGGC 1 cut(s) 554
Kzo9I GATC 3 cut(s) 133, 228, 453
LguI GCTCTTC 1 cut(s) 321
LmnI GCTCC 1 cut(s) 497
LpnPI CCDG 9 cut(s) 28, 30, 104, 131, 144, 432, 524, 566, 582
Lsp1109I GCAGC 1 cut(s) 487
MaeIII GTNAC 2 cut(s) 67, 355
MalI GATC 3 cut(s) 135, 230, 455
MboI GATC 3 cut(s) 133, 228, 453
MboII GAAGA 2 cut(s) 308, 478
MflI RGATCY 1 cut(s) 133
MluCI AATT 4 cut(s) 174, 304, 372, 485
Mly113I GGCGCC 2 cut(s) 519, 556
MlyI GAGTC 2 cut(s) 12, 32
MnlI CCTC 1 cut(s) 488
MroNI GCCGGC 1 cut(s) 552
MroXI GAANNNNTTC 2 cut(s) 315, 489
MseI TTAA 2 cut(s) 126, 182
MslI CAYNNNNRTG 1 cut(s) 527
MspI CCGG 2 cut(s) 131, 553
MspR9I CCNGG 2 cut(s) 119, 131
Mva1269I GAATGC 1 cut(s) 241
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 2 cut(s) 506, 558
NaeI GCCGGC 1 cut(s) 554
NarI GGCGCC 2 cut(s) 519, 556
NciI CCSGG 1 cut(s) 131
NdeI CATATG 1 cut(s) 195
NdeII GATC 3 cut(s) 133, 228, 453
NgoMIV GCCGGC 1 cut(s) 552
NlaIII CATG 6 cut(s) 167, 334, 509, 526, 551, 585
NlaIV GGNNCC 2 cut(s) 520, 557
NmuCI GTSAC 1 cut(s) 355
NspI RCATGY 2 cut(s) 167, 509
PaeI GCATGC 1 cut(s) 167
PciSI GCTCTTC 1 cut(s) 321
PctI GAATGC 1 cut(s) 241
PdiI GCCGGC 1 cut(s) 554
PdmI GAANNNNTTC 2 cut(s) 315, 489
PkrI GCNGC 3 cut(s) 502, 560, 574
PleI GAGTC 2 cut(s) 12, 32
PluTI GGCGCC 2 cut(s) 522, 559
PpsI GAGTC 2 cut(s) 12, 32
Psp6I CCWGG 1 cut(s) 117
PspEI GGTNACC 1 cut(s) 67
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 2 cut(s) 520, 557
PsuI RGATCY 1 cut(s) 133
RsaI GTAC 1 cut(s) 433
RsaNI GTAC 1 cut(s) 432
RseI CAYNNNNRTG 1 cut(s) 527
SapI GCTCTTC 1 cut(s) 321
SaqAI TTAA 2 cut(s) 126, 182
SatI GCNGC 3 cut(s) 501, 559, 573
Sau3AI GATC 3 cut(s) 133, 228, 453
SchI GAGTC 2 cut(s) 12, 32
ScrFI CCNGG 2 cut(s) 119, 131
SetI ASST 6 cut(s) 157, 249, 316, 372, 395, 502
SfoI GGCGCC 2 cut(s) 520, 557
SmiMI CAYNNNNRTG 1 cut(s) 527
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
SphI GCATGC 1 cut(s) 167
Sse9I AATT 4 cut(s) 174, 304, 372, 485
SsiI CCGC 2 cut(s) 559, 572
SspDI GGCGCC 2 cut(s) 518, 555
SspI AATATT 1 cut(s) 105
StyD4I CCNGG 2 cut(s) 117, 129
TaaI ACNGT 3 cut(s) 62, 327, 431
TaqI TCGA 4 cut(s) 5, 21, 227, 493
TasI AATT 4 cut(s) 174, 304, 372, 485
TauI GCSGC 2 cut(s) 561, 575
Tru1I TTAA 2 cut(s) 126, 182
Tru9I TTAA 2 cut(s) 126, 182
TseFI GTSAC 1 cut(s) 355
TseI GCWGC 1 cut(s) 500
Tsp45I GTSAC 1 cut(s) 355
TspDTI ATGAA 1 cut(s) 24
TspGWI ACGGA 1 cut(s) 466
XceI RCATGY 2 cut(s) 167, 509
XmnI GAANNNNTTC 2 cut(s) 315, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.