Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000164.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

23722 .. 25069

Gene Structure 1348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atggtcttggccttgaagctctgcttccaagcaagaatcaagcagagaagagctgtttcccggttccagtggagaatgaaggggggaggtaaggcggagaaattgtccacttggcttgccgaaaagtcatggagaacgctggagaagatcgatatgggtctcgatctgagtgtcgatgcaaaagtgagacagtatctgatggtggggtgtgtgaggaattcagattcagatagggtgtttcggttttacgaggagttcatgaaggataaattgggaggggatgtggaggatggtgttgtggacgtcactagcgacgagctgaagaagaaggcgcagaggaaggtggcgagaatccacgacgagctgaagaagacggcgcagatgaaggcggcgagaatccatgaattaaaagaggaaggaggagatgtggaattcctcaaaggtgatgtcggtgagaatccacgaattgaaggaggtcaacagcgacgagctgaagaagaaggcgatctgagagaagatgagagagaaccagacaccgaaaaagaggaaggaggagatgtggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006349 GO:0006725 GO:0006807 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0016070 GO:0016787 GO:0016788 GO:0017076 GO:0019222 GO:0022414 GO:0030554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0040029 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

188

Amino Acids

21.62

Weight (kDa)

5.7

Isoelectric Point (pI)

31.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	306
AciI	CCGC	2 cut(s)	95, 389
AcsI	RAATTY	2 cut(s)	217, 431
AcuI	CTGAAG	3 cut(s)	341, 386, 513
AcyI	GRCGYC	1 cut(s)	303
AgsI	TTSAA	2 cut(s)	16, 470
AjuI	GAANNNNNNNTTGG	2 cut(s)	254, 286
AluBI	AGCT	5 cut(s)	19, 53, 319, 364, 491
AluI	AGCT	5 cut(s)	19, 53, 319, 364, 491
Alw26I	GTCTC	2 cut(s)	164, 181
AlwNI	CAGNNNCTG	1 cut(s)	196
AoxI	GGCC	1 cut(s)	9
ApoI	RAATTY	2 cut(s)	217, 431
ArsI	GACNNNNNNTTYG	2 cut(s)	432, 464
AspLEI	GCGC	2 cut(s)	334, 379
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	2 cut(s)	455, 464
BbsI	GAAGAC	1 cut(s)	377
BccI	CCATC	2 cut(s)	193, 284
BceAI	ACGGC	1 cut(s)	390
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	2 cut(s)	164, 181
BfaI	CTAG	1 cut(s)	309
BisI	GCNGC	1 cut(s)	390
BlsI	GCNGC	1 cut(s)	391
Bme1390I	CCNGG	1 cut(s)	61
BmiI	GGNNCC	1 cut(s)	65
BmrFI	CCNGG	1 cut(s)	61
BmsI	GCATC	1 cut(s)	166
BpiI	GAAGAC	1 cut(s)	377
BpmI	CTGGAG	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	61
Bsa29I	ATCGAT	1 cut(s)	150
BsaHI	GRCGYC	1 cut(s)	303
BsaI	GGTCTC	1 cut(s)	164
BsaXI	ACNNNNNCTCC	7 cut(s)	89, 119, 267, 297, 411, 441, 543
Bse1I	ACTGG	1 cut(s)	67
BseCI	ATCGAT	1 cut(s)	150
BseGI	GGATG	2 cut(s)	286, 295
BseMII	CTCAG	2 cut(s)	158, 500
BseNI	ACTGG	1 cut(s)	67
BseRI	GAGGAG	3 cut(s)	266, 435, 567
BshFI	GGCC	1 cut(s)	11
BshVI	ATCGAT	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	61
BsmAI	GTCTC	2 cut(s)	164, 181
BsnI	GGCC	1 cut(s)	11
Bso31I	GGTCTC	1 cut(s)	164
Bsp143I	GATC	3 cut(s)	147, 163, 505
BspACI	CCGC	2 cut(s)	95, 389
BspANI	GGCC	1 cut(s)	11
BspCNI	CTCAG	2 cut(s)	159, 501
BspDI	ATCGAT	1 cut(s)	150
BspHI	TCATGA	1 cut(s)	258
BspLI	GGNNCC	1 cut(s)	65
BspQI	GCTCTTC	1 cut(s)	43
BspTNI	GGTCTC	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	67
BssMI	GATC	3 cut(s)	147, 163, 505
BssNI	GRCGYC	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	192
Bst6I	CTCTTC	1 cut(s)	43
BstACI	GRCGYC	1 cut(s)	303
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	2 cut(s)	167, 509
BstF5I	GGATG	2 cut(s)	286, 295
BstHHI	GCGC	2 cut(s)	334, 379
BstKTI	GATC	3 cut(s)	150, 166, 508
BstMAI	GTCTC	2 cut(s)	164, 181
BstMBI	GATC	3 cut(s)	147, 163, 505
BstSCI	CCNGG	1 cut(s)	59
BstV2I	GAAGAC	1 cut(s)	377
Bsu15I	ATCGAT	1 cut(s)	150
BsuRI	GGCC	1 cut(s)	11
BsuTUI	ATCGAT	1 cut(s)	150
BtsCI	GGATG	2 cut(s)	286, 295
BtsIMutI	CAGTG	1 cut(s)	74
Cac8I	GCNNGC	1 cut(s)	117
CaiI	CAGNNNCTG	1 cut(s)	196
CciI	TCATGA	1 cut(s)	258
CfoI	GCGC	2 cut(s)	334, 379
ClaI	ATCGAT	1 cut(s)	150
CspCI	CAANNNNNGTGG	2 cut(s)	97, 132
CviAII	CATG	3 cut(s)	129, 259, 401
CviJI	RGCY	7 cut(s)	11, 19, 53, 115, 319, 364, 491
CviKI_1	RGCY	7 cut(s)	11, 19, 53, 115, 319, 364, 491
DdeI	CTNAG	2 cut(s)	167, 509
DpnI	GATC	3 cut(s)	149, 165, 507
DpnII	GATC	3 cut(s)	147, 163, 505
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
EciI	GGCGGA	1 cut(s)	110
Eco31I	GGTCTC	1 cut(s)	164
Eco57I	CTGAAG	3 cut(s)	341, 386, 513
EcoRI	GAATTC	2 cut(s)	217, 431
FaeI	CATG	3 cut(s)	132, 262, 404
FaiI	YATR	4 cut(s)	130, 155, 260, 402
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FatI	CATG	3 cut(s)	128, 258, 400
Fnu4HI	GCNGC	1 cut(s)	390
FokI	GGATG	2 cut(s)	293, 302
Fsp4HI	GCNGC	1 cut(s)	390
FspBI	CTAG	1 cut(s)	309
GlaI	GCGC	2 cut(s)	333, 378
GluI	GCNGC	1 cut(s)	390
GsuI	CTGGAG	1 cut(s)	161
HaeIII	GGCC	1 cut(s)	11
HapII	CCGG	1 cut(s)	61
HhaI	GCGC	2 cut(s)	334, 379
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	3 cut(s)	132, 262, 404
Hin6I	GCGC	2 cut(s)	332, 377
HinP1I	GCGC	2 cut(s)	332, 377
HincII	GTYRAC	1 cut(s)	479
HindII	GTYRAC	1 cut(s)	479
HinfI	GANTC	5 cut(s)	36, 224, 351, 396, 457
HpaII	CCGG	1 cut(s)	61
HphI	GGTGA	2 cut(s)	455, 464
Hpy166II	GTNNAC	3 cut(s)	108, 301, 479
Hpy188I	TCNGA	5 cut(s)	168, 198, 223, 229, 510
Hpy188III	TCNNGA	2 cut(s)	161, 259
Hpy8I	GTNNAC	3 cut(s)	108, 301, 479
Hpy99I	CGWCG	3 cut(s)	317, 362, 489
HpyAV	CCTTC	9 cut(s)	73, 256, 322, 334, 379, 410, 464, 494, 542
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	1 cut(s)	179
HpyF3I	CTNAG	2 cut(s)	167, 509
HpySE526I	ACGT	1 cut(s)	303
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	3 cut(s)	132, 262, 404
HspAI	GCGC	2 cut(s)	332, 377
Kzo9I	GATC	3 cut(s)	147, 163, 505
LguI	GCTCTTC	1 cut(s)	43
LpnPI	CCDG	4 cut(s)	74, 80, 125, 543
LweI	GCATC	1 cut(s)	166
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	3 cut(s)	149, 165, 507
MboI	GATC	3 cut(s)	147, 163, 505
MboII	GAAGA	9 cut(s)	60, 157, 334, 337, 379, 382, 506, 509, 527
MluCI	AATT	6 cut(s)	101, 217, 269, 404, 431, 465
MseI	TTAA	1 cut(s)	407
MspI	CCGG	1 cut(s)	61
MspR9I	CCNGG	1 cut(s)	61
NciI	CCSGG	1 cut(s)	61
NdeII	GATC	3 cut(s)	147, 163, 505
NlaIII	CATG	3 cut(s)	132, 262, 404
NlaIV	GGNNCC	1 cut(s)	65
NmuCI	GTSAC	1 cut(s)	304
PagI	TCATGA	1 cut(s)	258
PciSI	GCTCTTC	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PfeI	GAWTC	5 cut(s)	36, 224, 351, 396, 457
PkrI	GCNGC	1 cut(s)	391
PspN4I	GGNNCC	1 cut(s)	65
PstNI	CAGNNNCTG	1 cut(s)	196
SapI	GCTCTTC	1 cut(s)	43
SaqAI	TTAA	1 cut(s)	407
SatI	GCNGC	1 cut(s)	390
Sau3AI	GATC	3 cut(s)	147, 163, 505
ScrFI	CCNGG	1 cut(s)	61
SfaNI	GCATC	1 cut(s)	166
Sse9I	AATT	6 cut(s)	101, 217, 269, 404, 431, 465
SsiI	CCGC	2 cut(s)	95, 389
SspMI	CTAG	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	59
TaaI	ACNGT	1 cut(s)	192
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	3 cut(s)	150, 162, 174
TasI	AATT	6 cut(s)	101, 217, 269, 404, 431, 465
TauI	GCSGC	1 cut(s)	392
TfiI	GAWTC	5 cut(s)	36, 224, 351, 396, 457
Tru1I	TTAA	1 cut(s)	407
Tru9I	TTAA	1 cut(s)	407
TscAI	CASTG	1 cut(s)	74
TseFI	GTSAC	1 cut(s)	304
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	5 cut(s)	92, 247, 275, 398, 417
TspRI	CASTG	1 cut(s)	74
XapI	RAATTY	2 cut(s)	217, 431
XspI	CTAG	1 cut(s)	309
ZraI	GACGTC	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.