Rmu_ssc0000167.1_g000021

Wall-associated receptor kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000167.1
N/A
Physical Location & Seq
Reverse (-)
119750 .. 120145
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000167.1_g000021.1.cds

Sequence Viewer

Length: 396 bp
atggttgccataaagaagtgtgaagtttatgctaacatatctatggatgacgtgagggctctttctcagatcaaccacaaaaatgtggtgaagctattagggtgttgtttaaagacagaataccctttactggtctacgagtacttcttcaacattgcaactctttctgagcacattcacagaaagggatcctcaccattttcgtgggaactgcgaatgaagatagctgtccaatccgcaactgcactcgcatacttacactcctccacttccaagccaaaaatcatacaccgacatttaaaggggacaaatatacttctagatggaaattatatggtcaaactgtcaggctgtggattttcaccagtccggatattagcacctatgatgcactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

131

Amino Acids

14.79

Weight (kDa)

9.48

Isoelectric Point (pI)

54.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 135
AccIII TCCGGA 1 cut(s) 369
AciI CCGC 1 cut(s) 237
AclWI GGATC 2 cut(s) 183, 196
AfaI GTAC 1 cut(s) 143
AfiI CCNNNNNNNGG 1 cut(s) 130
AgsI TTSAA 1 cut(s) 151
AjiI CACGTC 1 cut(s) 52
AluBI AGCT 2 cut(s) 94, 227
AluI AGCT 2 cut(s) 94, 227
Alw21I GWGCWC 1 cut(s) 174
AlwI GGATC 2 cut(s) 183, 196
Aor13HI TCCGGA 1 cut(s) 369
AsuHPI GGTGA 3 cut(s) 100, 186, 354
BamHI GGATCC 1 cut(s) 188
BanII GRGCYC 1 cut(s) 61
Bbv12I GWGCWC 1 cut(s) 174
BccI CCATC 1 cut(s) 317
BfaI CTAG 1 cut(s) 320
BmcAI AGTACT 1 cut(s) 143
BmgBI CACGTC 1 cut(s) 52
BmiI GGNNCC 1 cut(s) 190
BmsI GCATC 1 cut(s) 378
BsaWI WCCGGW 1 cut(s) 369
BsaXI ACNNNNNCTCC 2 cut(s) 245, 275
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse1I ACTGG 2 cut(s) 135, 365
Bse3DI GCAATG 1 cut(s) 153
BseAI TCCGGA 1 cut(s) 369
BseGI GGATG 1 cut(s) 52
BseLI CCNNNNNNNGG 1 cut(s) 130
BseMI GCAATG 1 cut(s) 153
BseMII CTCAG 2 cut(s) 80, 159
BseNI ACTGG 2 cut(s) 135, 365
BseRI GAGGAG 1 cut(s) 253
BsgI GTGCAG 1 cut(s) 228
BsiHKAI GWGCWC 1 cut(s) 174
BsiSI CCGG 1 cut(s) 370
BslFI GGGAC 1 cut(s) 319
BslI CCNNNNNNNGG 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 319
Bsp1286I GDGCHC 2 cut(s) 61, 174
Bsp13I TCCGGA 1 cut(s) 369
Bsp143I GATC 2 cut(s) 69, 188
BspACI CCGC 1 cut(s) 237
BspCNI CTCAG 2 cut(s) 79, 160
BspEI TCCGGA 1 cut(s) 369
BspLI GGNNCC 1 cut(s) 190
BspPI GGATC 2 cut(s) 183, 196
BsrDI GCAATG 1 cut(s) 153
BsrI ACTGG 2 cut(s) 135, 365
BssMI GATC 2 cut(s) 69, 188
Bst4CI ACNGT 1 cut(s) 345
BstDEI CTNAG 2 cut(s) 66, 168
BstF5I GGATG 1 cut(s) 52
BstKTI GATC 2 cut(s) 72, 191
BstMBI GATC 2 cut(s) 69, 188
BstX2I RGATCY 1 cut(s) 188
BstXI CCANNNNNNTGG 1 cut(s) 204
BstYI RGATCY 1 cut(s) 188
BtrI CACGTC 1 cut(s) 52
BtsCI GGATG 1 cut(s) 52
BtsIMutI CAGTG 1 cut(s) 391
Csp6I GTAC 1 cut(s) 142
CviJI RGCY 5 cut(s) 59, 94, 227, 277, 351
CviKI_1 RGCY 5 cut(s) 59, 94, 227, 277, 351
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 2 cut(s) 66, 168
DpnI GATC 2 cut(s) 71, 190
DpnII GATC 2 cut(s) 69, 188
DraI TTTAAA 2 cut(s) 111, 300
Eco24I GRGCYC 1 cut(s) 61
EcoT38I GRGCYC 1 cut(s) 61
FaqI GGGAC 1 cut(s) 319
FblI GTMKAC 1 cut(s) 135
FokI GGATG 1 cut(s) 59
FriOI GRGCYC 1 cut(s) 61
FspBI CTAG 1 cut(s) 320
HapII CCGG 1 cut(s) 370
HpaII CCGG 1 cut(s) 370
HphI GGTGA 3 cut(s) 100, 186, 354
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 2 cut(s) 69, 169
Hpy188III TCNNGA 2 cut(s) 320, 370
Hpy8I GTNNAC 1 cut(s) 136
HpyCH4III ACNGT 1 cut(s) 345
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 3 cut(s) 158, 245, 391
HpyF3I CTNAG 2 cut(s) 66, 168
HpySE526I ACGT 1 cut(s) 51
Kpn2I TCCGGA 1 cut(s) 369
Kzo9I GATC 2 cut(s) 69, 188
LpnPI CCDG 4 cut(s) 116, 333, 378, 383
LweI GCATC 1 cut(s) 378
MaeI CTAG 1 cut(s) 320
MaeII ACGT 1 cut(s) 51
MalI GATC 2 cut(s) 71, 190
MboI GATC 2 cut(s) 69, 188
MboII GAAGA 2 cut(s) 139, 232
MflI RGATCY 1 cut(s) 188
MhlI GDGCHC 2 cut(s) 61, 174
MluCI AATT 1 cut(s) 328
MnlI CCTC 3 cut(s) 48, 202, 274
MroI TCCGGA 1 cut(s) 369
MseI TTAA 2 cut(s) 110, 299
MslI CAYNNNNRTG 3 cut(s) 41, 81, 202
MspI CCGG 1 cut(s) 370
NdeII GATC 2 cut(s) 69, 188
NlaIV GGNNCC 1 cut(s) 190
PspN4I GGNNCC 1 cut(s) 190
PsuI RGATCY 1 cut(s) 188
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
RseI CAYNNNNRTG 3 cut(s) 41, 81, 202
SaqAI TTAA 2 cut(s) 110, 299
Sau3AI GATC 2 cut(s) 69, 188
ScaI AGTACT 1 cut(s) 143
SduI GDGCHC 2 cut(s) 61, 174
SetI ASST 4 cut(s) 54, 96, 229, 385
SfaNI GCATC 1 cut(s) 378
SmiMI CAYNNNNRTG 3 cut(s) 41, 81, 202
Sse9I AATT 1 cut(s) 328
SsiI CCGC 1 cut(s) 237
SspMI CTAG 1 cut(s) 320
TaaI ACNGT 1 cut(s) 345
TaiI ACGT 1 cut(s) 54
TasI AATT 1 cut(s) 328
TatI WGTACW 1 cut(s) 141
Tru1I TTAA 2 cut(s) 110, 299
Tru9I TTAA 2 cut(s) 110, 299
TspDTI ATGAA 1 cut(s) 233
XbaI TCTAGA 1 cut(s) 319
XmiI GTMKAC 1 cut(s) 135
XspI CTAG 1 cut(s) 320
ZrmI AGTACT 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.