Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000167.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

164696 .. 165517

Gene Structure 822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ctgctgaaacccaatctcacctcctccgtcgtcgttttgatggatcaagtggaggcaccaattatcgatgtcagccatgttggtgctctagattttactggcaatggtgtagaagccgagtctttcaagcaccgcgttgatgaaattttcgttcaggttgacaagcttgagcagagagtgaatgagatagagcagttttactcgagcgcgagtaaaaagcaggcgaatgcaagtaagagtggcttagctgtgaaggataaagagaagcatgttatgagtatgaagaagcagcagcaagaggctgcattgagggaggcagctgccgcaaagagaatgcaagaactcatgcgccaatttggcaccatattgcgtcaagtaattaacttaactagccatcttgttgtgttctgtgtgcatgattcgagatttgtgcatgtgtgtgagtataatattctgtactcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010030 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1900140 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

154

Amino Acids

17.39

Weight (kDa)

7.19

Isoelectric Point (pI)

36.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	55, 359
AccII	CGCG	2 cut(s)	135, 209
AciI	CCGC	2 cut(s)	133, 324
AclWI	GGATC	1 cut(s)	51
AcsI	RAATTY	1 cut(s)	144
AfaI	GTAC	1 cut(s)	458
AgsI	TTSAA	1 cut(s)	127
AluBI	AGCT	3 cut(s)	166, 248, 320
AluI	AGCT	3 cut(s)	166, 248, 320
Alw21I	GWGCWC	1 cut(s)	88
AlwI	GGATC	1 cut(s)	51
Ama87I	CYCGRG	1 cut(s)	202
ApeKI	GCWGC	5 cut(s)	289, 292, 302, 317, 320
ApoI	RAATTY	1 cut(s)	144
AspLEI	GCGC	2 cut(s)	209, 351
AsuHPI	GGTGA	1 cut(s)	10
AvaI	CYCGRG	1 cut(s)	202
BanI	GGYRCC	2 cut(s)	55, 359
Bbv12I	GWGCWC	1 cut(s)	88
BbvI	GCAGC	5 cut(s)	289, 301, 304, 307, 329
BccI	CCATC	2 cut(s)	34, 402
BcgI	CGANNNNNNTGC	2 cut(s)	412, 446
BfaI	CTAG	2 cut(s)	89, 390
BglI	GCCNNNNNGGC	1 cut(s)	357
BisI	GCNGC	6 cut(s)	290, 293, 303, 318, 321, 324
BlpI	GCTNAGC	1 cut(s)	244
BlsI	GCNGC	6 cut(s)	291, 294, 304, 319, 322, 325
BmeT110I	CYCGRG	1 cut(s)	202
BmiI	GGNNCC	2 cut(s)	57, 361
Bpu1102I	GCTNAGC	1 cut(s)	244
BpuEI	CTTGAG	1 cut(s)	188
Bsa29I	ATCGAT	1 cut(s)	66
Bse1I	ACTGG	1 cut(s)	103
Bse3DI	GCAATG	1 cut(s)	109
BseCI	ATCGAT	1 cut(s)	66
BseMI	GCAATG	1 cut(s)	109
BseNI	ACTGG	1 cut(s)	103
BseRI	GAGGAG	1 cut(s)	13
BseXI	GCAGC	5 cut(s)	289, 301, 304, 307, 329
Bsh1236I	CGCG	2 cut(s)	135, 209
BshNI	GGYRCC	2 cut(s)	55, 359
BshVI	ATCGAT	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	88
BsiHKCI	CYCGRG	1 cut(s)	202
BsmI	GAATGC	2 cut(s)	232, 339
BsoBI	CYCGRG	1 cut(s)	202
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	1 cut(s)	43
Bsp1720I	GCTNAGC	1 cut(s)	244
BspACI	CCGC	2 cut(s)	133, 324
BspDI	ATCGAT	1 cut(s)	66
BspFNI	CGCG	2 cut(s)	135, 209
BspLI	GGNNCC	2 cut(s)	57, 361
BspPI	GGATC	1 cut(s)	51
BspT107I	GGYRCC	2 cut(s)	55, 359
BsrDI	GCAATG	1 cut(s)	109
BsrI	ACTGG	1 cut(s)	103
BssMI	GATC	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	244
BstFNI	CGCG	2 cut(s)	135, 209
BstHHI	GCGC	2 cut(s)	209, 351
BstKTI	GATC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	2 cut(s)	323, 357
BstNSI	RCATGY	2 cut(s)	272, 437
BstUI	CGCG	2 cut(s)	135, 209
BstV1I	GCAGC	5 cut(s)	289, 301, 304, 307, 329
Bsu15I	ATCGAT	1 cut(s)	66
BsuTUI	ATCGAT	1 cut(s)	66
Cac8I	GCNNGC	1 cut(s)	222
CfoI	GCGC	2 cut(s)	209, 351
ClaI	ATCGAT	1 cut(s)	66
CseI	GACGC	1 cut(s)	359
Csp6I	GTAC	1 cut(s)	457
CviAII	CATG	5 cut(s)	77, 269, 346, 416, 434
CviJI	RGCY	8 cut(s)	75, 116, 166, 243, 248, 302, 320, 393
CviKI_1	RGCY	8 cut(s)	75, 116, 166, 243, 248, 302, 320, 393
CviQI	GTAC	1 cut(s)	457
DdeI	CTNAG	1 cut(s)	244
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
Eco88I	CYCGRG	1 cut(s)	202
FaeI	CATG	5 cut(s)	80, 272, 349, 419, 437
FaiI	YATR	9 cut(s)	78, 270, 275, 281, 347, 365, 417, 435, 447
FalI	AAGNNNNNCTT	2 cut(s)	227, 259
FatI	CATG	5 cut(s)	76, 268, 345, 415, 433
Fnu4HI	GCNGC	6 cut(s)	290, 293, 303, 318, 321, 324
Fsp4HI	GCNGC	6 cut(s)	290, 293, 303, 318, 321, 324
FspBI	CTAG	2 cut(s)	89, 390
GlaI	GCGC	2 cut(s)	208, 350
GluI	GCNGC	6 cut(s)	290, 293, 303, 318, 321, 324
HgaI	GACGC	1 cut(s)	359
HhaI	GCGC	2 cut(s)	209, 351
Hin1II	CATG	5 cut(s)	80, 272, 349, 419, 437
Hin6I	GCGC	2 cut(s)	207, 349
HinP1I	GCGC	2 cut(s)	207, 349
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	2 cut(s)	119, 419
HphI	GGTGA	1 cut(s)	10
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188III	TCNNGA	3 cut(s)	89, 423, 462
Hpy8I	GTNNAC	1 cut(s)	160
Hpy99I	CGWCG	2 cut(s)	32, 35
HpyAV	CCTTC	1 cut(s)	247
HpyCH4V	TGCA	5 cut(s)	230, 305, 337, 415, 433
HpyF10VI	GCNNNNNNNGC	2 cut(s)	323, 357
HpyF3I	CTNAG	1 cut(s)	244
Hsp92II	CATG	5 cut(s)	80, 272, 349, 419, 437
HspAI	GCGC	2 cut(s)	207, 349
Kzo9I	GATC	1 cut(s)	43
LpnPI	CCDG	3 cut(s)	84, 140, 206
Lsp1109I	GCAGC	5 cut(s)	289, 301, 304, 307, 329
MaeI	CTAG	2 cut(s)	89, 390
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MboII	GAAGA	1 cut(s)	295
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	4 cut(s)	60, 144, 353, 378
MlyI	GAGTC	1 cut(s)	128
MnlI	CCTC	6 cut(s)	31, 34, 46, 292, 303, 307
MseI	TTAA	2 cut(s)	381, 386
MslI	CAYNNNNRTG	2 cut(s)	81, 438
MspA1I	CMGCKG	1 cut(s)	320
Mva1269I	GAATGC	2 cut(s)	232, 339
MvnI	CGCG	2 cut(s)	135, 209
MwoI	GCNNNNNNNGC	2 cut(s)	323, 357
NdeII	GATC	1 cut(s)	43
NlaIII	CATG	5 cut(s)	80, 272, 349, 419, 437
NlaIV	GGNNCC	2 cut(s)	57, 361
NmeAIII	GCCGAG	1 cut(s)	142
NspI	RCATGY	2 cut(s)	272, 437
PaeR7I	CTCGAG	1 cut(s)	202
PctI	GAATGC	2 cut(s)	232, 339
PfeI	GAWTC	1 cut(s)	419
PkrI	GCNGC	6 cut(s)	291, 294, 304, 319, 322, 325
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PspN4I	GGNNCC	2 cut(s)	57, 361
PspXI	VCTCGAGB	1 cut(s)	202
PvuII	CAGCTG	1 cut(s)	320
RsaI	GTAC	1 cut(s)	458
RsaNI	GTAC	1 cut(s)	457
RseI	CAYNNNNRTG	2 cut(s)	81, 438
SaqAI	TTAA	2 cut(s)	381, 386
SatI	GCNGC	6 cut(s)	290, 293, 303, 318, 321, 324
Sau3AI	GATC	1 cut(s)	43
SchI	GAGTC	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	5 cut(s)	23, 159, 168, 250, 322
Sfr274I	CTCGAG	1 cut(s)	202
SlaI	CTCGAG	1 cut(s)	202
SmiMI	CAYNNNNRTG	2 cut(s)	81, 438
SmlI	CTYRAG	2 cut(s)	167, 202
SmoI	CTYRAG	2 cut(s)	167, 202
Sse9I	AATT	4 cut(s)	60, 144, 353, 378
SsiI	CCGC	2 cut(s)	133, 324
SspI	AATATT	1 cut(s)	451
SspMI	CTAG	2 cut(s)	89, 390
TaqI	TCGA	3 cut(s)	66, 203, 422
TasI	AATT	4 cut(s)	60, 144, 353, 378
TatI	WGTACW	1 cut(s)	456
TauI	GCSGC	1 cut(s)	326
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	2 cut(s)	381, 386
Tru9I	TTAA	2 cut(s)	381, 386
TseI	GCWGC	5 cut(s)	289, 292, 302, 317, 320
TspDTI	ATGAA	2 cut(s)	156, 296
TspGWI	ACGGA	1 cut(s)	16
XapI	RAATTY	1 cut(s)	144
XbaI	TCTAGA	1 cut(s)	88
XceI	RCATGY	2 cut(s)	272, 437
XhoI	CTCGAG	1 cut(s)	202
XspI	CTAG	2 cut(s)	89, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.