Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000180.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1648

Gene Structure 1648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

gtgtttgtacttctacatcaacttcaaattttcacccgtggtagacctttgcctgagcaacctcctatttatcctccagctgaccttttagaagactctcgtgcaaagagtgctggcatagatgcttcaggtcccaagcttggtaatgagctcagacttgttgatgccgtgccttgtagaattgcgtttgagaggggtaaagaacgtcacttttgctttctagcaatctctttgggagaatcaggggatgaagaatcttgcaaatctgctatggctatgatttcggaggagctaaatctacaaagtaatgaggtgggcagaagactaaaacctttacttgaccttgaaaccgttgtacaatcttcaaacccatctctaggtcctcccgaggcttcctcttcttattcaacaccttccaattccttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001708 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0007034 GO:0008150 GO:0008152 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0009987 GO:0010638 GO:0012505 GO:0016020 GO:0016192 GO:0019898 GO:0030154 GO:0032502 GO:0033043 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044088 GO:0044090 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045165 GO:0046148 GO:0046283 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0065007 GO:0071702 GO:0071704 GO:1901576 GO:1903415

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FPL

Protein Analysis

142

Amino Acids

15.47

Weight (kDa)

5.05

Isoelectric Point (pI)

56.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	43
AcsI	RAATTY	1 cut(s)	27
AcuI	CTGAAG	1 cut(s)	111
AfaI	GTAC	2 cut(s)	9, 357
AfiI	CCNNNNNNNGG	2 cut(s)	140, 377
AgsI	TTSAA	4 cut(s)	26, 347, 366, 408
AluBI	AGCT	4 cut(s)	80, 139, 151, 292
AluI	AGCT	4 cut(s)	80, 139, 151, 292
Alw21I	GWGCWC	1 cut(s)	153
Ama87I	CYCGRG	1 cut(s)	386
ApoI	RAATTY	1 cut(s)	27
AspS9I	GGNCC	2 cut(s)	131, 380
AsuHPI	GGTGA	1 cut(s)	25
AvaI	CYCGRG	1 cut(s)	386
AvaII	GGWCC	2 cut(s)	131, 380
BanII	GRGCYC	1 cut(s)	153
BauI	CACGAG	1 cut(s)	99
BbsI	GAAGAC	2 cut(s)	99, 328
Bbv12I	GWGCWC	1 cut(s)	153
BccI	CCATC	1 cut(s)	379
BceAI	ACGGC	1 cut(s)	152
BfaI	CTAG	3 cut(s)	221, 377, 427
Bme18I	GGWCC	2 cut(s)	131, 380
BmeT110I	CYCGRG	1 cut(s)	386
BmgT120I	GGNCC	2 cut(s)	131, 380
BmiI	GGNNCC	1 cut(s)	133
BmsI	GCATC	2 cut(s)	112, 154
BpiI	GAAGAC	2 cut(s)	99, 328
BplI	GAGNNNNNCTC	2 cut(s)	380, 412
BpmI	CTGGAG	1 cut(s)	60
Bpu10I	CCTNAGC	1 cut(s)	54
BsaJI	CCNNGG	2 cut(s)	37, 387
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 377
BseDI	CCNNGG	2 cut(s)	37, 387
BseGI	GGATG	1 cut(s)	253
BseLI	CCNNNNNNNGG	2 cut(s)	140, 377
BseMII	CTCAG	2 cut(s)	45, 166
BseRI	GAGGAG	1 cut(s)	302
BsiHKAI	GWGCWC	1 cut(s)	153
BsiHKCI	CYCGRG	1 cut(s)	386
BslFI	GGGAC	1 cut(s)	117
BslI	CCNNNNNNNGG	2 cut(s)	140, 377
BsmFI	GGGAC	1 cut(s)	117
BsoBI	CYCGRG	1 cut(s)	386
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp1407I	TGTACA	1 cut(s)	355
BspCNI	CTCAG	2 cut(s)	46, 165
BspLI	GGNNCC	1 cut(s)	133
BsrGI	TGTACA	1 cut(s)	355
BssECI	CCNNGG	2 cut(s)	37, 387
BssSI	CACGAG	1 cut(s)	99
Bst2BI	CACGAG	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	352
Bst6I	CTCTTC	1 cut(s)	403
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstAUI	TGTACA	1 cut(s)	355
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	2 cut(s)	54, 152
BstDSI	CCRYGG	1 cut(s)	37
BstF5I	GGATG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstV2I	GAAGAC	2 cut(s)	99, 328
BtgI	CCRYGG	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	253
Cac8I	GCNNGC	1 cut(s)	115
Cfr13I	GGNCC	2 cut(s)	131, 380
Csp6I	GTAC	2 cut(s)	8, 356
CviJI	RGCY	6 cut(s)	80, 139, 151, 275, 292, 392
CviKI_1	RGCY	6 cut(s)	80, 139, 151, 275, 292, 392
CviQI	GTAC	2 cut(s)	8, 356
DdeI	CTNAG	2 cut(s)	54, 152
Eam1104I	CTCTTC	1 cut(s)	403
EarI	CTCTTC	1 cut(s)	403
Ecl136II	GAGCTC	1 cut(s)	151
Eco24I	GRGCYC	1 cut(s)	153
Eco47I	GGWCC	2 cut(s)	131, 380
Eco53kI	GAGCTC	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	111
Eco88I	CYCGRG	1 cut(s)	386
EcoICRI	GAGCTC	1 cut(s)	151
EcoO109I	RGGNCCY	2 cut(s)	131, 380
EcoT38I	GRGCYC	1 cut(s)	153
FaiI	YATR	3 cut(s)	119, 272, 278
FaqI	GGGAC	1 cut(s)	117
FblI	GTMKAC	1 cut(s)	43
FokI	GGATG	1 cut(s)	260
FriOI	GRGCYC	1 cut(s)	153
FspBI	CTAG	3 cut(s)	221, 377, 427
GsuI	CTGGAG	1 cut(s)	60
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	3 cut(s)	95, 239, 254
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	1 cut(s)	44
Hpy188I	TCNGA	2 cut(s)	155, 286
Hpy188III	TCNNGA	1 cut(s)	386
Hpy8I	GTNNAC	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	423
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	2 cut(s)	104, 261
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	2 cut(s)	54, 152
HpySE526I	ACGT	1 cut(s)	205
LmnI	GCTCC	1 cut(s)	289
LpnPI	CCDG	5 cut(s)	66, 90, 99, 114, 228
LweI	GCATC	2 cut(s)	112, 154
MaeI	CTAG	3 cut(s)	221, 377, 427
MaeII	ACGT	1 cut(s)	205
MaeIII	GTNAC	1 cut(s)	206
MboII	GAAGA	5 cut(s)	104, 263, 333, 354, 390
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	3 cut(s)	27, 180, 418
MlyI	GAGTC	1 cut(s)	89
MnlI	CCTC	8 cut(s)	72, 84, 186, 280, 304, 382, 393, 406
MspA1I	CMGCKG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	110
NlaIV	GGNNCC	1 cut(s)	133
NmuCI	GTSAC	1 cut(s)	206
PfeI	GAWTC	2 cut(s)	239, 254
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
PpuMI	RGGWCCY	2 cut(s)	131, 380
Psp124BI	GAGCTC	1 cut(s)	153
Psp5II	RGGWCCY	2 cut(s)	131, 380
PspN4I	GGNNCC	1 cut(s)	133
PspPI	GGNCC	2 cut(s)	131, 380
PspPPI	RGGWCCY	2 cut(s)	131, 380
PvuII	CAGCTG	1 cut(s)	80
RsaI	GTAC	2 cut(s)	9, 357
RsaNI	GTAC	2 cut(s)	8, 356
SacI	GAGCTC	1 cut(s)	153
Sau96I	GGNCC	2 cut(s)	131, 380
SchI	GAGTC	1 cut(s)	89
SduI	GDGCHC	1 cut(s)	153
SfaNI	GCATC	2 cut(s)	112, 154
SinI	GGWCC	2 cut(s)	131, 380
Sse9I	AATT	3 cut(s)	27, 180, 418
SspMI	CTAG	3 cut(s)	221, 377, 427
SstI	GAGCTC	1 cut(s)	153
TaaI	ACNGT	1 cut(s)	352
TaiI	ACGT	1 cut(s)	208
TasI	AATT	3 cut(s)	27, 180, 418
TatI	WGTACW	2 cut(s)	7, 355
TfiI	GAWTC	2 cut(s)	239, 254
TseFI	GTSAC	1 cut(s)	206
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	1 cut(s)	264
VpaK11BI	GGWCC	2 cut(s)	131, 380
XapI	RAATTY	1 cut(s)	27
XmiI	GTMKAC	1 cut(s)	43
XspI	CTAG	3 cut(s)	221, 377, 427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.