Rmu_ssc0000184.1_g000023

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000184.1
N/A
Physical Location & Seq
Reverse (-)
81339 .. 82186
848 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 546 bp
atgactcgtcatatggatgatttgttccagtacgagggtatgaatgaaaaagatctcagaaggctgtgggtcttacttgaagaaagatttggcaatgtccgtgactccctgcttcctgacctagaagtgagatggcatagcctccgcttctatgatttcaagtcagttcttgactacaactcggaagcacttcgcattaaatccttaatggaattctgtggtaaagagatcatagatgcgatgttgattgagaagactctctctaccttccccgtctctgcattgatggttgctaagaactatcaaatcgatgttactgcaggacggatcacaagacgttctggtccatataatcactctacttcggaaggtaaccgccaaaataggcgaacacgaactgaagaggtcaacatggaaagagagagggaggaagatatttgtaaagctcgtgaagaaattgtcaccgcctacatagcatattgtgaagcaagagaagctcactatgtggaacaagatgatcaagaagatgatctagagaagggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

181

Amino Acids

21.48

Weight (kDa)

5.01

Isoelectric Point (pI)

56.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 342
AciI CCGC 3 cut(s) 145, 376, 465
AclWI GGATC 1 cut(s) 335
AcsI RAATTY 1 cut(s) 212
AcuI CTGAAG 1 cut(s) 420
AdeI CACNNNGTG 1 cut(s) 505
AfaI GTAC 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 2 cut(s) 80, 160
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
AloI GAACNNNNNNTCC 2 cut(s) 8, 40
AluBI AGCT 2 cut(s) 446, 497
AluI AGCT 2 cut(s) 446, 497
Alw26I GTCTC 1 cut(s) 280
AlwI GGATC 1 cut(s) 335
ApoI RAATTY 1 cut(s) 212
Asp700I GAANNNNTTC 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 344
AsuHPI GGTGA 1 cut(s) 454
AvaII GGWCC 1 cut(s) 344
BauI CACGAG 1 cut(s) 447
BbsI GAAGAC 1 cut(s) 260
BccI CCATC 2 cut(s) 126, 280
BcgI CGANNNNNNTGC 2 cut(s) 299, 333
BclI TGATCA 1 cut(s) 517
BcoDI GTCTC 1 cut(s) 280
BfaI CTAG 2 cut(s) 122, 533
BfmI CTRYAG 1 cut(s) 318
BglII AGATCT 1 cut(s) 52
Bme18I GGWCC 1 cut(s) 344
BmgT120I GGNCC 1 cut(s) 344
BmsI GCATC 1 cut(s) 226
BpiI GAAGAC 1 cut(s) 260
Bsa29I ATCGAT 1 cut(s) 309
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse1I ACTGG 1 cut(s) 28
Bse3DI GCAATG 1 cut(s) 100
BseCI ATCGAT 1 cut(s) 309
BseGI GGATG 1 cut(s) 22
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMI GCAATG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 70
BseNI ACTGG 1 cut(s) 28
BshVI ATCGAT 1 cut(s) 309
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 280
BsmBI CGTCTC 1 cut(s) 280
Bsp143I GATC 5 cut(s) 52, 228, 327, 517, 529
BspACI CCGC 3 cut(s) 145, 376, 465
BspCNI CTCAG 1 cut(s) 69
BspDI ATCGAT 1 cut(s) 309
BspMAI CTGCAG 1 cut(s) 322
BspPI GGATC 1 cut(s) 335
BsrDI GCAATG 1 cut(s) 100
BsrI ACTGG 1 cut(s) 28
BssMI GATC 5 cut(s) 52, 228, 327, 517, 529
BssSI CACGAG 1 cut(s) 447
Bst2BI CACGAG 1 cut(s) 447
Bst6I CTCTTC 1 cut(s) 396
BstDEI CTNAG 2 cut(s) 56, 294
BstEII GGTNACC 1 cut(s) 371
BstF5I GGATG 1 cut(s) 22
BstKTI GATC 5 cut(s) 55, 231, 330, 520, 532
BstMAI GTCTC 1 cut(s) 280
BstMBI GATC 5 cut(s) 52, 228, 327, 517, 529
BstMWI GCNNNNNNNGC 2 cut(s) 473, 494
BstPI GGTNACC 1 cut(s) 371
BstSFI CTRYAG 1 cut(s) 318
BstV2I GAAGAC 1 cut(s) 260
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
Bsu15I ATCGAT 1 cut(s) 309
BsuTUI ATCGAT 1 cut(s) 309
BtgZI GCGATG 1 cut(s) 254
BtsCI GGATG 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 344
ClaI ATCGAT 1 cut(s) 309
Csp6I GTAC 1 cut(s) 31
CviAII CATG 1 cut(s) 412
CviJI RGCY 4 cut(s) 64, 141, 446, 497
CviKI_1 RGCY 4 cut(s) 64, 141, 446, 497
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 2 cut(s) 56, 294
DpnI GATC 5 cut(s) 54, 230, 329, 519, 531
DpnII GATC 5 cut(s) 52, 228, 327, 517, 529
DraIII CACNNNGTG 1 cut(s) 505
DrdI GACNNNNNNGTC 1 cut(s) 342
DseDI GACNNNNNNGTC 1 cut(s) 342
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
Eco47I GGWCC 1 cut(s) 344
Eco57I CTGAAG 1 cut(s) 420
Eco91I GGTNACC 1 cut(s) 371
EcoO65I GGTNACC 1 cut(s) 371
EcoRI GAATTC 1 cut(s) 212
Esp3I CGTCTC 1 cut(s) 280
FaeI CATG 1 cut(s) 415
FatI CATG 1 cut(s) 411
FauNDI CATATG 1 cut(s) 12
FbaI TGATCA 1 cut(s) 517
FokI GGATG 1 cut(s) 29
FspBI CTAG 2 cut(s) 122, 533
Hin1II CATG 1 cut(s) 415
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HinfI GANTC 3 cut(s) 4, 104, 256
HphI GGTGA 1 cut(s) 454
Hpy166II GTNNAC 1 cut(s) 409
Hpy188I TCNGA 3 cut(s) 59, 184, 367
Hpy188III TCNNGA 5 cut(s) 116, 170, 449, 521, 533
Hpy8I GTNNAC 1 cut(s) 409
HpyAV CCTTC 4 cut(s) 54, 277, 362, 532
HpyCH4IV ACGT 1 cut(s) 337
HpyCH4V TGCA 2 cut(s) 281, 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 473, 494
HpyF3I CTNAG 2 cut(s) 56, 294
HpySE526I ACGT 1 cut(s) 337
Hsp92II CATG 1 cut(s) 415
Ksp22I TGATCA 1 cut(s) 517
Kzo9I GATC 5 cut(s) 52, 228, 327, 517, 529
LpnPI CCDG 5 cut(s) 41, 122, 129, 306, 327
LweI GCATC 1 cut(s) 226
MaeI CTAG 2 cut(s) 122, 533
MaeII ACGT 1 cut(s) 337
MaeIII GTNAC 4 cut(s) 101, 313, 371, 460
MalI GATC 5 cut(s) 54, 230, 329, 519, 531
MboI GATC 5 cut(s) 52, 228, 327, 517, 529
MboII GAAGA 6 cut(s) 92, 265, 413, 443, 464, 536
MflI RGATCY 1 cut(s) 52
MluCI AATT 2 cut(s) 212, 456
MlyI GAGTC 2 cut(s) 98, 250
MnlI CCTC 5 cut(s) 28, 152, 397, 417, 421
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 2 cut(s) 198, 206
MslI CAYNNNNRTG 1 cut(s) 15
MwoI GCNNNNNNNGC 2 cut(s) 473, 494
NdeI CATATG 1 cut(s) 12
NdeII GATC 5 cut(s) 52, 228, 327, 517, 529
NlaIII CATG 1 cut(s) 415
NmuCI GTSAC 2 cut(s) 101, 460
PdmI GAANNNNTTC 1 cut(s) 189
PleI GAGTC 2 cut(s) 98, 250
PpsI GAGTC 2 cut(s) 98, 250
PspEI GGTNACC 1 cut(s) 371
PspPI GGNCC 1 cut(s) 344
PstI CTGCAG 1 cut(s) 322
PsuI RGATCY 1 cut(s) 52
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 2 cut(s) 198, 206
Sau3AI GATC 5 cut(s) 52, 228, 327, 517, 529
Sau96I GGNCC 1 cut(s) 344
SchI GAGTC 2 cut(s) 98, 250
SetI ASST 7 cut(s) 123, 269, 340, 373, 408, 448, 499
SfaNI GCATC 1 cut(s) 226
SfcI CTRYAG 1 cut(s) 318
SinI GGWCC 1 cut(s) 344
SmiMI CAYNNNNRTG 1 cut(s) 15
Sse9I AATT 2 cut(s) 212, 456
SsiI CCGC 3 cut(s) 145, 376, 465
SspMI CTAG 2 cut(s) 122, 533
TaiI ACGT 1 cut(s) 340
TaqI TCGA 1 cut(s) 309
TasI AATT 2 cut(s) 212, 456
Tru1I TTAA 2 cut(s) 198, 206
Tru9I TTAA 2 cut(s) 198, 206
TseFI GTSAC 2 cut(s) 101, 460
Tsp45I GTSAC 2 cut(s) 101, 460
TspDTI ATGAA 2 cut(s) 56, 60
TspGWI ACGGA 2 cut(s) 89, 340
VpaK11BI GGWCC 1 cut(s) 344
XapI RAATTY 1 cut(s) 212
XbaI TCTAGA 1 cut(s) 532
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 2 cut(s) 122, 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.