Rmu_ssc0000192.1_g000016

UDP-sugar

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000192.1
N/A
Physical Location & Seq
Forward (+)
96120 .. 97151
1032 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 297 bp
atggcttccgccgtcgccgagcctaatctccacagaaacctccacctcctctccgccgaacaggtggagctggcgaaggtgctggtggagatggggcaggctcatctgttcgagcattgggccgagccggccgtcgacgatgacgaaaagaaagccttttttgatcaggtgagtcggctcaattcaagctatccagggggtttggcatcatatatcaaaactgctagagaactgttagcggattcaaaagccggaaagaatccatttgatggctttacaccttctgtaagtcgataa

Protein Analysis

98

Amino Acids

10.77

Weight (kDa)

5.46

Isoelectric Point (pI)

26.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 269
AccI GTMKAC 1 cut(s) 135
AciI CCGC 3 cut(s) 9, 54, 239
AcoI YGGCCR 1 cut(s) 129
AfiI CCNNNNNNNGG 1 cut(s) 269
AgsI TTSAA 2 cut(s) 186, 246
AjnI CCWGG 1 cut(s) 193
AluBI AGCT 2 cut(s) 70, 189
AluI AGCT 2 cut(s) 70, 189
AoxI GGCC 2 cut(s) 120, 129
AspS9I GGNCC 1 cut(s) 120
AsuHPI GGTGA 1 cut(s) 181
BccI CCATC 2 cut(s) 85, 263
BceAI ACGGC 1 cut(s) 116
BciT130I CCWGG 1 cut(s) 195
BclI TGATCA 1 cut(s) 163
BfaI CTAG 1 cut(s) 225
BglI GCCNNNNNGGC 1 cut(s) 128
Bme1390I CCNGG 1 cut(s) 195
BmgT120I GGNCC 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 195
BmsI GCATC 1 cut(s) 215
BsaJI CCNNGG 1 cut(s) 194
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 1 cut(s) 269
Bse118I RCCGGY 1 cut(s) 127
BseBI CCWGG 1 cut(s) 195
BseDI CCNNGG 1 cut(s) 194
BseLI CCNNNNNNNGG 1 cut(s) 269
BseRI GAGGAG 1 cut(s) 38
BseX3I CGGCCG 1 cut(s) 129
Bsh1285I CGRYCG 1 cut(s) 132
BshFI GGCC 2 cut(s) 122, 131
BsiEI CGRYCG 1 cut(s) 132
BsiSI CCGG 2 cut(s) 128, 252
BslI CCNNNNNNNGG 1 cut(s) 269
BsnI GGCC 2 cut(s) 122, 131
Bsp143I GATC 1 cut(s) 163
BspACI CCGC 3 cut(s) 9, 54, 239
BspANI GGCC 2 cut(s) 122, 131
BsrFI RCCGGY 1 cut(s) 127
BssAI RCCGGY 1 cut(s) 127
BssECI CCNNGG 1 cut(s) 194
BssMI GATC 1 cut(s) 163
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 234
BstC8I GCNNGC 3 cut(s) 72, 99, 129
BstKTI GATC 1 cut(s) 166
BstMBI GATC 1 cut(s) 163
BstMCI CGRYCG 1 cut(s) 132
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNI CCWGG 1 cut(s) 195
BstSCI CCNGG 1 cut(s) 193
BstZI CGGCCG 1 cut(s) 129
BsuRI GGCC 2 cut(s) 122, 131
Cac8I GCNNGC 3 cut(s) 72, 99, 129
Cfr10I RCCGGY 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 120
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
EaeI YGGCCR 1 cut(s) 129
EagI CGGCCG 1 cut(s) 129
EciI GGCGGA 1 cut(s) 43
EclXI CGGCCG 1 cut(s) 129
Eco52I CGGCCG 1 cut(s) 129
EcoRII CCWGG 1 cut(s) 193
FaiI YATR 2 cut(s) 211, 213
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FbaI TGATCA 1 cut(s) 163
FblI GTMKAC 1 cut(s) 135
FspBI CTAG 1 cut(s) 225
HaeIII GGCC 2 cut(s) 122, 131
HapII CCGG 2 cut(s) 128, 252
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 3 cut(s) 172, 242, 259
HpaII CCGG 2 cut(s) 128, 252
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 1 cut(s) 136
Hpy8I GTNNAC 1 cut(s) 136
Hpy99I CGWCG 3 cut(s) 17, 137, 140
HpyAV CCTTC 2 cut(s) 70, 291
HpyCH4III ACNGT 1 cut(s) 234
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
KroI GCCGGC 1 cut(s) 127
KroNI GCCGGC 1 cut(s) 129
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 1 cut(s) 163
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 9 cut(s) 47, 56, 68, 83, 141, 152, 180, 207, 265
LweI GCATC 1 cut(s) 215
MaeI CTAG 1 cut(s) 225
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MluCI AATT 1 cut(s) 181
MlyI GAGTC 1 cut(s) 181
MnlI CCTC 3 cut(s) 50, 56, 59
MroNI GCCGGC 1 cut(s) 127
MspI CCGG 2 cut(s) 128, 252
MspR9I CCNGG 1 cut(s) 195
MvaI CCWGG 1 cut(s) 195
MwoI GCNNNNNNNGC 1 cut(s) 128
NaeI GCCGGC 1 cut(s) 129
NdeII GATC 1 cut(s) 163
NgoMIV GCCGGC 1 cut(s) 127
NmeAIII GCCGAG 2 cut(s) 43, 148
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PdiI GCCGGC 1 cut(s) 129
PfeI GAWTC 2 cut(s) 242, 259
PflMI CCANNNNNTGG 1 cut(s) 269
PleI GAGTC 1 cut(s) 180
PpsI GAGTC 1 cut(s) 180
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PspPI GGNCC 1 cut(s) 120
SalI GTCGAC 1 cut(s) 134
Sau3AI GATC 1 cut(s) 163
Sau96I GGNCC 1 cut(s) 120
SchI GAGTC 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 195
SetI ASST 8 cut(s) 42, 48, 66, 72, 81, 171, 191, 283
SfaNI GCATC 1 cut(s) 215
SfiI GGCCNNNNNGGCC 1 cut(s) 128
SgrDI CGTCGACG 1 cut(s) 134
Sse9I AATT 1 cut(s) 181
SsiI CCGC 3 cut(s) 9, 54, 239
SspMI CTAG 1 cut(s) 225
StyD4I CCNGG 1 cut(s) 193
TaaI ACNGT 1 cut(s) 234
TaqI TCGA 3 cut(s) 111, 135, 292
TasI AATT 1 cut(s) 181
TfiI GAWTC 2 cut(s) 242, 259
Van91I CCANNNNNTGG 1 cut(s) 269
XmiI GTMKAC 1 cut(s) 135
XspI CTAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.