Rmu_ssc0000196.1_g000013

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000196.1
N/A
Physical Location & Seq
Reverse (-)
64801 .. 65626
826 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 441 bp
atgtcagctgtcatcttggtcaacggtcaacagccggtcaacgaccgcaggccagttttcccaccaattttccggcgacctatttcgaggatgactaacctgaacaacttggactttgctcaattgggaacaactggctctggatatcacatgtgggttcgtgatgtccaccaacatctcaaggccgatggaatcctagatacgattctcgagcctagccaagacgtgctaactgttgagcaagctcaagctttggaagccaatagagcagatttagaggcaaataaggcgaaagccatcatcctaatgactcgtcatatggatgatctgctccagtacaagtgtatgaatgaagaagaccccagaaggctgtgggtctcactcaatgaaagatttggcaacttccgtgactccctgtttcttgacctagaagtgagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

146

Amino Acids

16.84

Weight (kDa)

5.77

Isoelectric Point (pI)

50.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 46
AfaI GTAC 1 cut(s) 338
AflIII ACRYGT 1 cut(s) 150
AjiI CACGTC 1 cut(s) 226
AluBI AGCT 3 cut(s) 8, 245, 251
AluI AGCT 3 cut(s) 8, 245, 251
Alw26I GTCTC 1 cut(s) 382
Ama87I CYCGRG 1 cut(s) 209
AoxI GGCC 2 cut(s) 50, 183
AvaI CYCGRG 1 cut(s) 209
BbsI GAAGAC 1 cut(s) 363
BccI CCATC 2 cut(s) 182, 305
BcoDI GTCTC 1 cut(s) 382
BfaI CTAG 3 cut(s) 197, 216, 428
BmeT110I CYCGRG 1 cut(s) 209
BmgBI CACGTC 1 cut(s) 226
BpiI GAAGAC 1 cut(s) 363
BpmI CTGGAG 1 cut(s) 317
BpuEI CTTGAG 2 cut(s) 164, 231
BsaI GGTCTC 1 cut(s) 382
Bse118I RCCGGY 1 cut(s) 34
Bse1I ACTGG 3 cut(s) 53, 139, 334
BseGI GGATG 3 cut(s) 96, 300, 328
BseNI ACTGG 3 cut(s) 53, 139, 334
Bsh1285I CGRYCG 1 cut(s) 46
BshFI GGCC 2 cut(s) 52, 185
BsiEI CGRYCG 1 cut(s) 46
BsiHKCI CYCGRG 1 cut(s) 209
BsiSI CCGG 2 cut(s) 35, 73
BsmAI GTCTC 1 cut(s) 382
BsnI GGCC 2 cut(s) 52, 185
Bso31I GGTCTC 1 cut(s) 382
BsoBI CYCGRG 1 cut(s) 209
Bsp143I GATC 1 cut(s) 325
BspACI CCGC 1 cut(s) 46
BspANI GGCC 2 cut(s) 52, 185
BspTNI GGTCTC 1 cut(s) 382
BsrFI RCCGGY 1 cut(s) 34
BsrI ACTGG 3 cut(s) 53, 139, 334
BssAI RCCGGY 1 cut(s) 34
BssMI GATC 1 cut(s) 325
Bst4CI ACNGT 2 cut(s) 26, 235
BstC8I GCNNGC 2 cut(s) 50, 243
BstF5I GGATG 3 cut(s) 96, 300, 328
BstKTI GATC 1 cut(s) 328
BstMAI GTCTC 1 cut(s) 382
BstMBI GATC 1 cut(s) 325
BstMCI CGRYCG 1 cut(s) 46
BstMWI GCNNNNNNNGC 3 cut(s) 257, 266, 287
BstNSI RCATGY 1 cut(s) 154
BstV2I GAAGAC 1 cut(s) 363
BsuRI GGCC 2 cut(s) 52, 185
BtrI CACGTC 1 cut(s) 226
BtsCI GGATG 3 cut(s) 96, 300, 328
Cac8I GCNNGC 2 cut(s) 50, 243
Cfr10I RCCGGY 1 cut(s) 34
Csp6I GTAC 1 cut(s) 337
CviAII CATG 1 cut(s) 151
CviQI GTAC 1 cut(s) 337
DpnI GATC 1 cut(s) 327
DpnII GATC 1 cut(s) 325
Eco31I GGTCTC 1 cut(s) 382
Eco32I GATATC 1 cut(s) 146
Eco88I CYCGRG 1 cut(s) 209
EcoRV GATATC 1 cut(s) 146
FaeI CATG 1 cut(s) 154
FaiI YATR 4 cut(s) 152, 318, 320, 347
FatI CATG 1 cut(s) 150
FauNDI CATATG 1 cut(s) 318
FokI GGATG 3 cut(s) 103, 287, 335
FspBI CTAG 3 cut(s) 197, 216, 428
GsuI CTGGAG 1 cut(s) 317
HaeIII GGCC 2 cut(s) 52, 185
HapII CCGG 2 cut(s) 35, 73
Hin1II CATG 1 cut(s) 154
HincII GTYRAC 3 cut(s) 22, 29, 40
HindII GTYRAC 3 cut(s) 22, 29, 40
HindIII AAGCTT 1 cut(s) 249
HinfI GANTC 4 cut(s) 192, 205, 310, 410
HpaII CCGG 2 cut(s) 35, 73
Hpy166II GTNNAC 4 cut(s) 22, 29, 40, 169
Hpy188III TCNNGA 4 cut(s) 141, 161, 209, 422
Hpy8I GTNNAC 4 cut(s) 22, 29, 40, 169
HpyAV CCTTC 1 cut(s) 360
HpyCH4III ACNGT 2 cut(s) 26, 235
HpyCH4IV ACGT 1 cut(s) 225
HpyF10VI GCNNNNNNNGC 3 cut(s) 257, 266, 287
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 1 cut(s) 154
Kzo9I GATC 1 cut(s) 325
LmnI GCTCC 1 cut(s) 336
MaeI CTAG 3 cut(s) 197, 216, 428
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 1 cut(s) 407
MalI GATC 1 cut(s) 327
MboI GATC 1 cut(s) 325
MboII GAAGA 2 cut(s) 365, 368
MfeI CAATTG 1 cut(s) 122
MluCI AATT 2 cut(s) 66, 122
MlyI GAGTC 2 cut(s) 304, 404
MnlI CCTC 2 cut(s) 81, 271
MslI CAYNNNNRTG 2 cut(s) 305, 321
MspA1I CMGCKG 1 cut(s) 8
MspI CCGG 2 cut(s) 35, 73
MunI CAATTG 1 cut(s) 122
MwoI GCNNNNNNNGC 3 cut(s) 257, 266, 287
NdeI CATATG 1 cut(s) 318
NdeII GATC 1 cut(s) 325
NlaIII CATG 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 407
NspI RCATGY 1 cut(s) 154
PaeR7I CTCGAG 1 cut(s) 209
PciI ACATGT 1 cut(s) 150
PfeI GAWTC 2 cut(s) 192, 205
PleI GAGTC 2 cut(s) 304, 404
PpsI GAGTC 2 cut(s) 304, 404
PscI ACATGT 1 cut(s) 150
PvuII CAGCTG 1 cut(s) 8
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
RseI CAYNNNNRTG 2 cut(s) 305, 321
Sau3AI GATC 1 cut(s) 325
SchI GAGTC 2 cut(s) 304, 404
SetI ASST 7 cut(s) 10, 82, 102, 228, 247, 253, 429
Sfr274I CTCGAG 1 cut(s) 209
SlaI CTCGAG 1 cut(s) 209
SmiMI CAYNNNNRTG 2 cut(s) 305, 321
SmlI CTYRAG 3 cut(s) 179, 209, 246
SmoI CTYRAG 3 cut(s) 179, 209, 246
Sse9I AATT 2 cut(s) 66, 122
SsiI CCGC 1 cut(s) 46
SspMI CTAG 3 cut(s) 197, 216, 428
TaaI ACNGT 2 cut(s) 26, 235
TaiI ACGT 1 cut(s) 228
TaqI TCGA 2 cut(s) 86, 210
TasI AATT 2 cut(s) 66, 122
TatI WGTACW 1 cut(s) 336
TfiI GAWTC 2 cut(s) 192, 205
TseFI GTSAC 1 cut(s) 407
Tsp45I GTSAC 1 cut(s) 407
TspDTI ATGAA 3 cut(s) 362, 366, 402
TspGWI ACGGA 1 cut(s) 395
XceI RCATGY 1 cut(s) 154
XhoI CTCGAG 1 cut(s) 209
XspI CTAG 3 cut(s) 197, 216, 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.