Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000200.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1925

Gene Structure 1925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 539 bp

atggaattcttttaggaggcatcctggtcatgtacgagttccacaacttcctgagacctattcttctccttatgtactccttttggatacctcaaataatcaccaatgttatccgtgattcaagaaaacccttgcaccctcattacatcttaggcatgactgttactcggctagcaatcccgttatacatatttggttgccctaacaacttcatgcgcattgagcctgacaagagttggtgtatttgtttgagtttatttattggactgcaagcctcaattcttcttctccagcattatcttggctctcgttggttcattcctcgtcagattctacctgagaaatatagctaccacagaaggtctgatcaggatacaaatcatgccacagactgtgtcatttgcatgactgcaattgatctcacacagcgttcagatgattgcatggtgacaccatgcgatcatttctttcattcaggatcaactgacatcacccaacacactaattttggttgggtattgaatccattttctgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005975 GO:0005976 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009664 GO:0009791 GO:0009827 GO:0009845 GO:0009987 GO:0010154 GO:0010191 GO:0010393 GO:0010498 GO:0012505 GO:0016043 GO:0016567 GO:0016740 GO:0017144 GO:0019538 GO:0019787 GO:0019941 GO:0022414 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0036211 GO:0042545 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0045229 GO:0045488 GO:0048316 GO:0048363 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0051603 GO:0061458 GO:0061630 GO:0061659 GO:0070647 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0080001 GO:0090351 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

178

Amino Acids

20.66

Weight (kDa)

7.23

Isoelectric Point (pI)

50.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF2921	PF11145	2 - 109	6.1e-43	Transmembrane E3 ligase/DUF2921 transmembrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	217
AclWI	GGATC	1 cut(s)	486
AcsI	RAATTY	1 cut(s)	5
AfaI	GTAC	2 cut(s)	34, 76
AgsI	TTSAA	2 cut(s)	122, 522
AjnI	CCWGG	1 cut(s)	23
AluBI	AGCT	1 cut(s)	350
AluI	AGCT	1 cut(s)	350
Alw26I	GTCTC	1 cut(s)	48
AlwI	GGATC	1 cut(s)	486
ApoI	RAATTY	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	218
AsuHPI	GGTGA	3 cut(s)	93, 459, 483
AsuNHI	GCTAGC	1 cut(s)	171
BciT130I	CCWGG	1 cut(s)	25
BciVI	GTATCC	2 cut(s)	80, 366
BclI	TGATCA	1 cut(s)	366
BcoDI	GTCTC	1 cut(s)	48
BfaI	CTAG	1 cut(s)	172
BfuI	GTATCC	2 cut(s)	80, 366
Bme1390I	CCNGG	1 cut(s)	25
BmrFI	CCNGG	1 cut(s)	25
BmsI	GCATC	1 cut(s)	29
BmtI	GCTAGC	1 cut(s)	175
BpmI	CTGGAG	1 cut(s)	274
BsaBI	GATNNNNATC	1 cut(s)	377
BsaI	GGTCTC	1 cut(s)	48
Bse8I	GATNNNNATC	1 cut(s)	377
BseBI	CCWGG	1 cut(s)	25
BseGI	GGATG	1 cut(s)	20
BseJI	GATNNNNATC	1 cut(s)	377
BseMII	CTCAG	2 cut(s)	43, 329
BsmAI	GTCTC	1 cut(s)	48
Bso31I	GGTCTC	1 cut(s)	48
Bsp143I	GATC	4 cut(s)	366, 417, 459, 478
BspCNI	CTCAG	2 cut(s)	44, 330
BspOI	GCTAGC	1 cut(s)	175
BspPI	GGATC	1 cut(s)	486
BspTNI	GGTCTC	1 cut(s)	48
BssMI	GATC	4 cut(s)	366, 417, 459, 478
Bst2UI	CCWGG	1 cut(s)	25
Bst4CI	ACNGT	2 cut(s)	162, 394
BstC8I	GCNNGC	2 cut(s)	173, 272
BstDEI	CTNAG	3 cut(s)	52, 150, 338
BstF5I	GGATG	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	4 cut(s)	369, 420, 462, 481
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	4 cut(s)	366, 417, 459, 478
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstNI	CCWGG	1 cut(s)	25
BstSCI	CCNGG	1 cut(s)	23
BsuI	GTATCC	2 cut(s)	80, 366
BtsCI	GGATG	1 cut(s)	20
Cac8I	GCNNGC	2 cut(s)	173, 272
CfoI	GCGC	1 cut(s)	218
Csp6I	GTAC	2 cut(s)	33, 75
CviAII	CATG	7 cut(s)	30, 156, 213, 382, 405, 444, 455
CviJI	RGCY	5 cut(s)	171, 225, 274, 305, 350
CviKI_1	RGCY	5 cut(s)	171, 225, 274, 305, 350
CviQI	GTAC	2 cut(s)	33, 75
DdeI	CTNAG	3 cut(s)	52, 150, 338
DpnI	GATC	4 cut(s)	368, 419, 461, 480
DpnII	GATC	4 cut(s)	366, 417, 459, 478
Eco31I	GGTCTC	1 cut(s)	48
EcoRI	GAATTC	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	23
FaeI	CATG	7 cut(s)	33, 159, 216, 385, 408, 447, 458
FatI	CATG	7 cut(s)	29, 155, 212, 381, 404, 443, 454
FbaI	TGATCA	1 cut(s)	366
FokI	GGATG	1 cut(s)	7
FspAI	RTGCGCAY	1 cut(s)	217
FspBI	CTAG	1 cut(s)	172
FspI	TGCGCA	1 cut(s)	217
GlaI	GCGC	1 cut(s)	217
GsuI	CTGGAG	1 cut(s)	274
HhaI	GCGC	1 cut(s)	218
Hin1II	CATG	7 cut(s)	33, 159, 216, 385, 408, 447, 458
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HinfI	GANTC	3 cut(s)	118, 330, 522
HphI	GGTGA	3 cut(s)	93, 459, 483
Hpy188I	TCNGA	3 cut(s)	329, 366, 435
Hpy188III	TCNNGA	4 cut(s)	51, 122, 370, 476
HpyAV	CCTTC	1 cut(s)	353
HpyCH4III	ACNGT	2 cut(s)	162, 394
HpyCH4V	TGCA	5 cut(s)	135, 270, 404, 412, 443
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
HpyF3I	CTNAG	3 cut(s)	52, 150, 338
Hsp92II	CATG	7 cut(s)	33, 159, 216, 385, 408, 447, 458
HspAI	GCGC	1 cut(s)	216
Ksp22I	TGATCA	1 cut(s)	366
Kzo9I	GATC	4 cut(s)	366, 417, 459, 478
LpnPI	CCDG	8 cut(s)	10, 37, 64, 239, 304, 350, 355, 461
LweI	GCATC	1 cut(s)	29
MaeI	CTAG	1 cut(s)	172
MaeIII	GTNAC	2 cut(s)	162, 447
MalI	GATC	4 cut(s)	368, 419, 461, 480
MboI	GATC	4 cut(s)	366, 417, 459, 478
MboII	GAAGA	3 cut(s)	55, 274, 277
MfeI	CAATTG	1 cut(s)	413
MluCI	AATT	4 cut(s)	5, 278, 413, 504
MnlI	CCTC	5 cut(s)	10, 101, 149, 285, 332
MslI	CAYNNNNRTG	1 cut(s)	403
MspR9I	CCNGG	1 cut(s)	25
MunI	CAATTG	1 cut(s)	413
MvaI	CCWGG	1 cut(s)	25
MwoI	GCNNNNNNNGC	1 cut(s)	222
NdeII	GATC	4 cut(s)	366, 417, 459, 478
NheI	GCTAGC	1 cut(s)	171
NlaIII	CATG	7 cut(s)	33, 159, 216, 385, 408, 447, 458
NmeAIII	GCCGAG	1 cut(s)	147
NmuCI	GTSAC	1 cut(s)	447
NsbI	TGCGCA	1 cut(s)	217
PfeI	GAWTC	3 cut(s)	118, 330, 522
PflFI	GACNNNGTC	1 cut(s)	394
Psp6I	CCWGG	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	23
PsyI	GACNNNGTC	1 cut(s)	394
RsaI	GTAC	2 cut(s)	34, 76
RsaNI	GTAC	2 cut(s)	33, 75
RseI	CAYNNNNRTG	1 cut(s)	403
Sau3AI	GATC	4 cut(s)	366, 417, 459, 478
ScrFI	CCNGG	1 cut(s)	25
SetI	ASST	5 cut(s)	60, 93, 339, 352, 364
SfaNI	GCATC	1 cut(s)	29
SmiMI	CAYNNNNRTG	1 cut(s)	403
Sse9I	AATT	4 cut(s)	5, 278, 413, 504
SspMI	CTAG	1 cut(s)	172
StyD4I	CCNGG	1 cut(s)	23
TaaI	ACNGT	2 cut(s)	162, 394
TasI	AATT	4 cut(s)	5, 278, 413, 504
TatI	WGTACW	1 cut(s)	74
TfiI	GAWTC	3 cut(s)	118, 330, 522
TseFI	GTSAC	1 cut(s)	447
Tsp45I	GTSAC	1 cut(s)	447
TspDTI	ATGAA	3 cut(s)	201, 306, 460
TspGWI	ACGGA	1 cut(s)	103
Tth111I	GACNNNGTC	1 cut(s)	394
XapI	RAATTY	1 cut(s)	5
XcmI	CCANNNNNNNNNTGG	1 cut(s)	298
XspI	CTAG	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.