Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000204.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

259272 .. 261488

Gene Structure 2217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atgacgtggtcaacgaagctcatcactggtgaagaccctgatgaaggtccccaagtcaccgtgactcctgatgtacatttccaaaaagatttgggcttagatagcttggataatgtggagattgtaatggctctaaaatcacagcaaagtttcttaattgatacatcttgcctgagtgattcctccggcgacgcccgatatcagtgcccgcctgacctcatcatctccttagtcctcctcactgctgccgtttgggtgactcctgatgtacatttccaaaaagatttgggcttagatagcttggataatgtggagattgtaatggctctagaagaagagttcaagcttgagattcctgaccaggaagctgataagattgattctacaaatctggatattgagtacatctataaccatccaatggcttggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0031974 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0051192 GO:0070013 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

PP-binding

Protein Analysis

143

Amino Acids

16.01

Weight (kDa)

4.05

Isoelectric Point (pI)

27.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP-binding	PF00550	86 - 123	2.7e-07	Phosphopantetheine attachment site

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	421
AciI	CCGC	1 cut(s)	209
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	3 cut(s)	75, 270, 404
AfiI	CCNNNNNNNGG	2 cut(s)	44, 421
AgsI	TTSAA	1 cut(s)	343
AjiI	CACGTC	1 cut(s)	6
AjnI	CCWGG	1 cut(s)	360
AluBI	AGCT	5 cut(s)	19, 105, 300, 346, 368
AluI	AGCT	5 cut(s)	19, 105, 300, 346, 368
ApeKI	GCWGC	1 cut(s)	245
AspS9I	GGNCC	1 cut(s)	47
AsuHPI	GGTGA	3 cut(s)	41, 49, 268
AvaII	GGWCC	1 cut(s)	47
BaeGI	GKGCMC	1 cut(s)	209
BbsI	GAAGAC	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	232
BccI	CCATC	1 cut(s)	423
BceAI	ACGGC	1 cut(s)	233
BcgI	CGANNNNNNTGC	2 cut(s)	186, 220
BciT130I	CCWGG	1 cut(s)	362
BfaI	CTAG	1 cut(s)	329
BisI	GCNGC	1 cut(s)	246
BlsI	GCNGC	1 cut(s)	247
Bme1390I	CCNGG	1 cut(s)	362
Bme18I	GGWCC	1 cut(s)	47
BmgBI	CACGTC	1 cut(s)	6
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	362
BpiI	GAAGAC	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	368
BsaHI	GRCGYC	1 cut(s)	192
BsaXI	ACNNNNNCTCC	2 cut(s)	49, 79
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 421
Bse1I	ACTGG	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	362
BseGI	GGATG	1 cut(s)	415
BseLI	CCNNNNNNNGG	2 cut(s)	44, 421
BseMII	CTCAG	1 cut(s)	164
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	1 cut(s)	227
BseSI	GKGCMC	1 cut(s)	209
BseXI	GCAGC	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	186
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	2 cut(s)	44, 421
BsmFI	GGGAC	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	209
Bsp1407I	TGTACA	2 cut(s)	73, 268
BspACI	CCGC	1 cut(s)	209
BspCNI	CTCAG	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	49
BsrGI	TGTACA	2 cut(s)	73, 268
BsrI	ACTGG	1 cut(s)	31
BssNI	GRCGYC	1 cut(s)	192
Bst2UI	CCWGG	1 cut(s)	362
Bst4CI	ACNGT	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	330
BstACI	GRCGYC	1 cut(s)	192
BstAUI	TGTACA	2 cut(s)	73, 268
BstC8I	GCNNGC	1 cut(s)	209
BstDEI	CTNAG	4 cut(s)	97, 173, 229, 292
BstENI	CCTNNNNNAGG	1 cut(s)	42
BstF5I	GGATG	1 cut(s)	415
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 297
BstNI	CCWGG	1 cut(s)	362
BstSCI	CCNGG	1 cut(s)	360
BstSLI	GKGCMC	1 cut(s)	209
BstV1I	GCAGC	1 cut(s)	232
BstV2I	GAAGAC	1 cut(s)	39
BstXI	CCANNNNNNTGG	1 cut(s)	426
BtrI	CACGTC	1 cut(s)	6
BtsCI	GGATG	1 cut(s)	415
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	3 cut(s)	24, 209, 240
Cac8I	GCNNGC	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	47
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	3 cut(s)	74, 269, 403
CviQI	GTAC	3 cut(s)	74, 269, 403
DdeI	CTNAG	4 cut(s)	97, 173, 229, 292
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco32I	GATATC	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	47
EcoNI	CCTNNNNNAGG	1 cut(s)	42
EcoO109I	RGGNCCY	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	360
EcoRV	GATATC	1 cut(s)	200
FaiI	YATR	1 cut(s)	411
FaqI	GGGAC	1 cut(s)	33
FauI	CCCGC	1 cut(s)	216
Fnu4HI	GCNGC	1 cut(s)	246
FokI	GGATG	1 cut(s)	402
Fsp4HI	GCNGC	1 cut(s)	246
FspBI	CTAG	1 cut(s)	329
GluI	GCNGC	1 cut(s)	246
HapII	CCGG	1 cut(s)	186
HgaI	GACGC	1 cut(s)	200
Hin1I	GRCGYC	1 cut(s)	192
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	5 cut(s)	64, 179, 259, 352, 380
HpaII	CCGG	1 cut(s)	186
HphI	GGTGA	3 cut(s)	41, 49, 268
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188III	TCNNGA	5 cut(s)	68, 263, 329, 356, 392
Hpy8I	GTNNAC	1 cut(s)	12
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	1 cut(s)	38
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4IV	ACGT	1 cut(s)	5
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 297
HpyF3I	CTNAG	4 cut(s)	97, 173, 229, 292
HpySE526I	ACGT	1 cut(s)	5
Hsp92I	GRCGYC	1 cut(s)	192
Lsp1109I	GCAGC	1 cut(s)	232
MaeI	CTAG	1 cut(s)	329
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	3 cut(s)	55, 61, 256
MboII	GAAGA	3 cut(s)	44, 344, 347
MhlI	GDGCHC	1 cut(s)	209
MluCI	AATT	1 cut(s)	156
MlyI	GAGTC	2 cut(s)	58, 253
MnlI	CCTC	4 cut(s)	193, 227, 245, 248
MseI	TTAA	1 cut(s)	155
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	362
MwoI	GCNNNNNNNGC	2 cut(s)	102, 297
NlaIV	GGNNCC	1 cut(s)	49
NmuCI	GTSAC	3 cut(s)	55, 61, 256
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PfeI	GAWTC	3 cut(s)	179, 352, 380
PflFI	GACNNNGTC	1 cut(s)	7
PflMI	CCANNNNNTGG	1 cut(s)	421
PkrI	GCNGC	1 cut(s)	247
PleI	GAGTC	2 cut(s)	58, 253
PpsI	GAGTC	2 cut(s)	58, 253
PpuMI	RGGWCCY	1 cut(s)	47
Psp5II	RGGWCCY	1 cut(s)	47
Psp6I	CCWGG	1 cut(s)	360
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	1 cut(s)	49
PspPI	GGNCC	1 cut(s)	47
PspPPI	RGGWCCY	1 cut(s)	47
PsyI	GACNNNGTC	1 cut(s)	7
RsaI	GTAC	3 cut(s)	75, 270, 404
RsaNI	GTAC	3 cut(s)	74, 269, 403
SaqAI	TTAA	1 cut(s)	155
SatI	GCNGC	1 cut(s)	246
Sau96I	GGNCC	1 cut(s)	47
SchI	GAGTC	2 cut(s)	58, 253
ScrFI	CCNGG	1 cut(s)	362
SduI	GDGCHC	1 cut(s)	209
SetI	ASST	8 cut(s)	8, 21, 49, 107, 219, 302, 348, 370
SinI	GGWCC	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
Sse9I	AATT	1 cut(s)	156
SsiI	CCGC	1 cut(s)	209
SspMI	CTAG	1 cut(s)	329
StyD4I	CCNGG	1 cut(s)	360
TaaI	ACNGT	1 cut(s)	61
TaiI	ACGT	1 cut(s)	8
TasI	AATT	1 cut(s)	156
TatI	WGTACW	3 cut(s)	73, 268, 402
TfiI	GAWTC	3 cut(s)	179, 352, 380
Tru1I	TTAA	1 cut(s)	155
Tru9I	TTAA	1 cut(s)	155
TscAI	CASTG	3 cut(s)	31, 209, 247
TseFI	GTSAC	3 cut(s)	55, 61, 256
TseI	GCWGC	1 cut(s)	245
Tsp45I	GTSAC	3 cut(s)	55, 61, 256
TspDTI	ATGAA	1 cut(s)	57
TspRI	CASTG	3 cut(s)	31, 209, 247
Tth111I	GACNNNGTC	1 cut(s)	7
Van91I	CCANNNNNTGG	1 cut(s)	421
VpaK11BI	GGWCC	1 cut(s)	47
XagI	CCTNNNNNAGG	1 cut(s)	42
XbaI	TCTAGA	1 cut(s)	328
XspI	CTAG	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.