Rmu_ssc0000213.1_g000124

Clavaminate synthase-like protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000213.1
N/A
Physical Location & Seq
Reverse (-)
507085 .. 507616
532 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 330 bp
atgagagagaagtacccgaaatttgtggaaaaattggaagagcatgggttgttatgtactcgggttttaggagaaggcgatgacccatcttctccaattggccgtggctggaagtctacgttcttgaccaaagacaaggacatagctaagcaaagggctgctaagcttggcatgaagttggaatggttggaacttggaagatggagctggaaagatgcaaggaatgatcctgtaaaggctgttaccttcggcaatggcaattcattgccggtggatatcatccacaactgcttgaagattcttgaagaggaaagtgttgccattccttag
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

109

Amino Acids

12.35

Weight (kDa)

7.76

Isoelectric Point (pI)

41.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 116
AclWI GGATC 1 cut(s) 221
AcoI YGGCCR 1 cut(s) 100
AcsI RAATTY 1 cut(s) 20
AfaI GTAC 2 cut(s) 14, 58
AgsI TTSAA 2 cut(s) 295, 305
AluBI AGCT 3 cut(s) 146, 166, 207
AluI AGCT 3 cut(s) 146, 166, 207
AlwI GGATC 1 cut(s) 221
Ama87I CYCGRG 1 cut(s) 60
AoxI GGCC 1 cut(s) 100
ApeKI GCWGC 1 cut(s) 158
ApoI RAATTY 1 cut(s) 20
AvaI CYCGRG 1 cut(s) 60
BbvI GCAGC 1 cut(s) 145
BccI CCATC 2 cut(s) 94, 195
BceAI ACGGC 1 cut(s) 87
BisI GCNGC 1 cut(s) 159
BlpI GCTNAGC 2 cut(s) 147, 162
BlsI GCNGC 1 cut(s) 160
BmeT110I CYCGRG 1 cut(s) 60
BmsI GCATC 1 cut(s) 205
Bpu1102I GCTNAGC 2 cut(s) 147, 162
BsaJI CCNNGG 1 cut(s) 103
Bse118I RCCGGY 1 cut(s) 268
Bse3DI GCAATG 2 cut(s) 259, 263
BseDI CCNNGG 1 cut(s) 103
BseGI GGATG 1 cut(s) 279
BseMI GCAATG 2 cut(s) 259, 263
BseXI GCAGC 1 cut(s) 145
BshFI GGCC 1 cut(s) 102
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 1 cut(s) 269
BsnI GGCC 1 cut(s) 102
BsoBI CYCGRG 1 cut(s) 60
Bsp143I GATC 1 cut(s) 226
Bsp1720I GCTNAGC 2 cut(s) 147, 162
BspANI GGCC 1 cut(s) 102
BspPI GGATC 1 cut(s) 221
BspQI GCTCTTC 1 cut(s) 33
BsrDI GCAATG 2 cut(s) 259, 263
BsrFI RCCGGY 1 cut(s) 268
BssAI RCCGGY 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 103
BssMI GATC 1 cut(s) 226
Bst6I CTCTTC 2 cut(s) 33, 300
BstDEI CTNAG 3 cut(s) 147, 162, 327
BstDSI CCRYGG 1 cut(s) 103
BstF5I GGATG 1 cut(s) 279
BstKTI GATC 1 cut(s) 229
BstMBI GATC 1 cut(s) 226
BstV1I GCAGC 1 cut(s) 145
BsuRI GGCC 1 cut(s) 102
BtgI CCRYGG 1 cut(s) 103
BtgZI GCGATG 1 cut(s) 93
BtsCI GGATG 1 cut(s) 279
Cfr10I RCCGGY 1 cut(s) 268
Csp6I GTAC 2 cut(s) 13, 57
CviAII CATG 2 cut(s) 44, 172
CviJI RGCY 7 cut(s) 102, 108, 146, 158, 166, 207, 239
CviKI_1 RGCY 7 cut(s) 102, 108, 146, 158, 166, 207, 239
CviQI GTAC 2 cut(s) 13, 57
DdeI CTNAG 3 cut(s) 147, 162, 327
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
EaeI YGGCCR 1 cut(s) 100
Eam1104I CTCTTC 2 cut(s) 33, 300
EarI CTCTTC 2 cut(s) 33, 300
Eco32I GATATC 1 cut(s) 277
Eco88I CYCGRG 1 cut(s) 60
EcoRV GATATC 1 cut(s) 277
FaeI CATG 2 cut(s) 47, 175
FaiI YATR 4 cut(s) 45, 55, 143, 173
FatI CATG 2 cut(s) 43, 171
FblI GTMKAC 1 cut(s) 116
Fnu4HI GCNGC 1 cut(s) 159
FokI GGATG 1 cut(s) 266
Fsp4HI GCNGC 1 cut(s) 159
GluI GCNGC 1 cut(s) 159
HaeIII GGCC 1 cut(s) 102
HapII CCGG 1 cut(s) 269
Hin1II CATG 2 cut(s) 47, 175
HindIII AAGCTT 1 cut(s) 164
HinfI GANTC 1 cut(s) 298
HpaII CCGG 1 cut(s) 269
Hpy166II GTNNAC 1 cut(s) 117
Hpy188III TCNNGA 2 cut(s) 124, 302
Hpy8I GTNNAC 1 cut(s) 117
HpyAV CCTTC 2 cut(s) 68, 256
HpyCH4IV ACGT 1 cut(s) 119
HpyCH4V TGCA 1 cut(s) 218
HpyF3I CTNAG 3 cut(s) 147, 162, 327
HpySE526I ACGT 1 cut(s) 119
Hsp92II CATG 2 cut(s) 47, 175
Kzo9I GATC 1 cut(s) 226
LguI GCTCTTC 1 cut(s) 33
LmnI GCTCC 1 cut(s) 204
LpnPI CCDG 4 cut(s) 94, 193, 243, 282
Lsp1109I GCAGC 1 cut(s) 145
LweI GCATC 1 cut(s) 205
MaeII ACGT 1 cut(s) 119
MaeIII GTNAC 1 cut(s) 241
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 5 cut(s) 50, 81, 210, 307, 317
MfeI CAATTG 1 cut(s) 96
MluCI AATT 4 cut(s) 20, 32, 96, 259
MmeI TCCRAC 2 cut(s) 159, 168
MnlI CCTC 1 cut(s) 301
MspI CCGG 1 cut(s) 269
MunI CAATTG 1 cut(s) 96
NdeII GATC 1 cut(s) 226
NlaIII CATG 2 cut(s) 47, 175
PciSI GCTCTTC 1 cut(s) 33
PfeI GAWTC 1 cut(s) 298
PkrI GCNGC 1 cut(s) 160
RsaI GTAC 2 cut(s) 14, 58
RsaNI GTAC 2 cut(s) 13, 57
SapI GCTCTTC 1 cut(s) 33
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 1 cut(s) 226
SetI ASST 5 cut(s) 122, 148, 168, 209, 248
SfaNI GCATC 1 cut(s) 205
Sse9I AATT 4 cut(s) 20, 32, 96, 259
TaiI ACGT 1 cut(s) 122
TasI AATT 4 cut(s) 20, 32, 96, 259
TatI WGTACW 1 cut(s) 56
TfiI GAWTC 1 cut(s) 298
TseI GCWGC 1 cut(s) 158
TspDTI ATGAA 2 cut(s) 188, 252
XapI RAATTY 1 cut(s) 20
XmiI GTMKAC 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.