Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000218.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

222469 .. 228864

Gene Structure 6396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

atggcgtcttcaaagatccaagcgctgtggaaccacccggccggccctaaaaccattcatttttgggcaccgacttttaaatggggcatcagcatagctaatattgctgacttctctaaaccacctgaaaatctttcatatcctcagcaaatagccgttgcatgcactggaattgtctggtcacgctatagtactgttatcactcctaagaactggaatctttttagtgtcaacgtagcaatggccgggacaggcctctaccaactctcacggaaaatacggaaaccattcgtgatccaataccaatcggggaggaaataccctgttatcttacctccactatccatttcccacctccccgccgcgccatgctcctctcctctaaaatcaactccactcttctcttccctccgtctcacttcaccgccacagtttcgctctcacgtcctgccgcctttaaaacacttgctcaccgcaccagctctcctgccggccagcggcggctccgacgcggaagacaacaacaatgacggcggcggcggcggcggttggaataatccattcgactcatcatcctcatggtggtggcatgacgacaacgacaacggtggtggatctcataacctcattttgttctcgtctatattgttggcctccgtggcgtctgcggcggtgaattgggtgcttaaggatgggattggatacctgagcaagattatgctctccaaatatgggaggcattttgatgtcaatccgaaagggcgaaggaaaggagctattcctacagctgcggcggtgaattgggtgcttaaggatgggattggatacctgagcaagattatgctctcgaaatatgggaggcattttgatgtcaatccgaaagggcgaattcatttttgggcaccgacttttaaatggggcatcatcacagctaatattgctgacttctctaaaccacctgaaaatcttccatatcctcagcaaatagccgttgcatgcactggaattgtctggtcacgctattgtactgttatcactcctaagaactggaatctttttagtgtcaacgtagcaatggccgggacaggcctctaccaactctcacggaaaatacggcaggactatttctctgaggcagaaccaggtgttgcagaacaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006848 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015318 GO:0015711 GO:0015718 GO:0015849 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0046942 GO:0046943 GO:0050833 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098573 GO:0098656 GO:1901475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MPC

Protein Analysis

386

Amino Acids

42.4

Weight (kDa)

9.73

Isoelectric Point (pI)

44.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MPC	PF03650	6 - 95	3e-37	Mitochondrial pyruvate carriers
UVB_sens_prot	PF04884	218 - 254	6.6e-06	Vitamin B6 photo-protection and homoeostasis domain
UVB_sens_prot	PF04884	257 - 299	1e-06	Vitamin B6 photo-protection and homoeostasis domain
MPC	PF03650	292 - 380	2.1e-31	Mitochondrial pyruvate carriers

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	67, 901
AccII	CGCG	2 cut(s)	365, 512
AclWI	GGATC	3 cut(s)	10, 289, 622
AcoI	YGGCCR	4 cut(s)	39, 243, 492, 1077
AcsI	RAATTY	1 cut(s)	888
AcyI	GRCGYC	2 cut(s)	5, 662
AfaI	GTAC	2 cut(s)	193, 1027
AfeI	AGCGCT	1 cut(s)	24
AfiI	CCNNNNNNNGG	3 cut(s)	497, 582, 732
AflII	CTTAAG	2 cut(s)	686, 809
AgsI	TTSAA	1 cut(s)	12
AjiI	CACGTC	1 cut(s)	445
AjnI	CCWGG	1 cut(s)	1141
AjuI	GAANNNNNNNTTGG	2 cut(s)	880, 912
AluBI	AGCT	5 cut(s)	98, 482, 776, 788, 932
AluI	AGCT	5 cut(s)	98, 482, 776, 788, 932
Alw26I	GTCTC	1 cut(s)	419
AlwI	GGATC	3 cut(s)	10, 289, 622
Aor51HI	AGCGCT	1 cut(s)	24
AoxI	GGCC	8 cut(s)	39, 43, 243, 253, 492, 651, 1077, 1087
ApeKI	GCWGC	1 cut(s)	788
ApoI	RAATTY	1 cut(s)	888
Asp700I	GAANNNNTTC	2 cut(s)	287, 966
AspLEI	GCGC	2 cut(s)	25, 367
AspS9I	GGNCC	1 cut(s)	44
AsuC2I	CCSGG	3 cut(s)	38, 247, 1081
AsuHPI	GGTGA	4 cut(s)	414, 463, 685, 808
BaeGI	GKGCMC	2 cut(s)	70, 904
BanI	GGYRCC	2 cut(s)	67, 901
BbsI	GAAGAC	1 cut(s)	522
BbvCI	CCTCAGC	2 cut(s)	144, 978
BbvI	GCAGC	1 cut(s)	775
BccI	CCATC	2 cut(s)	686, 809
BceAI	ACGGC	4 cut(s)	140, 547, 974, 1130
BciT130I	CCWGG	1 cut(s)	1143
BciVI	GTATCC	2 cut(s)	695, 818
BcnI	CCSGG	3 cut(s)	38, 247, 1081
BcoDI	GTCTC	1 cut(s)	419
BfmI	CTRYAG	2 cut(s)	187, 783
BfoI	RGCGCY	1 cut(s)	26
BfrI	CTTAAG	2 cut(s)	686, 809
BfuI	GTATCC	2 cut(s)	695, 818
BglI	GCCNNNNNGGC	1 cut(s)	659
BmcAI	AGTACT	1 cut(s)	193
Bme1390I	CCNGG	4 cut(s)	38, 247, 1081, 1143
BmgBI	CACGTC	1 cut(s)	445
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	4 cut(s)	32, 69, 505, 903
BmrFI	CCNGG	4 cut(s)	38, 247, 1081, 1143
BmsI	GCATC	2 cut(s)	96, 930
BpiI	GAAGAC	1 cut(s)	522
Bpu10I	CCTNAGC	4 cut(s)	144, 707, 830, 978
BpuMI	CCSGG	3 cut(s)	38, 247, 1081
BsaBI	GATNNNNATC	2 cut(s)	750, 873
BsaHI	GRCGYC	2 cut(s)	5, 662
BsaJI	CCNNGG	1 cut(s)	657
BsaXI	ACNNNNNCTCC	2 cut(s)	468, 498
Bsc4I	CCNNNNNNNGG	3 cut(s)	497, 582, 732
Bse118I	RCCGGY	2 cut(s)	41, 490
Bse1I	ACTGG	4 cut(s)	172, 218, 1006, 1052
Bse3DI	GCAATG	2 cut(s)	246, 1080
Bse8I	GATNNNNATC	2 cut(s)	750, 873
BseBI	CCWGG	1 cut(s)	1143
BseDI	CCNNGG	1 cut(s)	657
BseGI	GGATG	3 cut(s)	572, 697, 820
BseJI	GATNNNNATC	2 cut(s)	750, 873
BseLI	CCNNNNNNNGG	3 cut(s)	497, 582, 732
BseMI	GCAATG	2 cut(s)	246, 1080
BseMII	CTCAG	5 cut(s)	158, 698, 821, 992, 1122
BseNI	ACTGG	4 cut(s)	172, 218, 1006, 1052
BseRI	GAGGAG	2 cut(s)	364, 369
BseSI	GKGCMC	2 cut(s)	70, 904
BseX3I	CGGCCG	1 cut(s)	39
BseXI	GCAGC	1 cut(s)	775
Bsh1236I	CGCG	2 cut(s)	365, 512
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	8 cut(s)	41, 45, 245, 255, 494, 653, 1079, 1089
BshNI	GGYRCC	2 cut(s)	67, 901
BsiEI	CGRYCG	1 cut(s)	42
BsiSI	CCGG	5 cut(s)	38, 42, 246, 491, 1080
BslFI	GGGAC	2 cut(s)	262, 1096
BslI	CCNNNNNNNGG	3 cut(s)	497, 582, 732
BsmAI	GTCTC	1 cut(s)	419
BsmBI	CGTCTC	1 cut(s)	419
BsmFI	GGGAC	2 cut(s)	262, 1096
BsnI	GGCC	8 cut(s)	41, 45, 245, 255, 494, 653, 1079, 1089
Bsp1286I	GDGCHC	2 cut(s)	70, 904
Bsp143I	GATC	3 cut(s)	15, 294, 614
BspANI	GGCC	8 cut(s)	41, 45, 245, 255, 494, 653, 1079, 1089
BspCNI	CTCAG	5 cut(s)	157, 699, 822, 991, 1123
BspFNI	CGCG	2 cut(s)	365, 512
BspLI	GGNNCC	4 cut(s)	32, 69, 505, 903
BspPI	GGATC	3 cut(s)	10, 289, 622
BspT107I	GGYRCC	2 cut(s)	67, 901
BspTI	CTTAAG	2 cut(s)	686, 809
BsrDI	GCAATG	2 cut(s)	246, 1080
BsrFI	RCCGGY	2 cut(s)	41, 490
BsrI	ACTGG	4 cut(s)	172, 218, 1006, 1052
BssAI	RCCGGY	2 cut(s)	41, 490
BssECI	CCNNGG	1 cut(s)	657
BssMI	GATC	3 cut(s)	15, 294, 614
BssNI	GRCGYC	2 cut(s)	5, 662
Bst2UI	CCWGG	1 cut(s)	1143
Bst4CI	ACNGT	4 cut(s)	196, 432, 608, 1030
Bst6I	CTCTTC	2 cut(s)	404, 409
BstACI	GRCGYC	2 cut(s)	5, 662
BstAFI	CTTAAG	2 cut(s)	686, 809
BstC8I	GCNNGC	5 cut(s)	43, 163, 492, 496, 997
BstDEI	CTNAG	7 cut(s)	144, 207, 707, 830, 978, 1041, 1131
BstDSI	CCRYGG	1 cut(s)	657
BstF5I	GGATG	3 cut(s)	572, 697, 820
BstFNI	CGCG	2 cut(s)	365, 512
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	2 cut(s)	25, 367
BstKTI	GATC	3 cut(s)	18, 297, 617
BstMAI	GTCTC	1 cut(s)	419
BstMBI	GATC	3 cut(s)	15, 294, 614
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	6 cut(s)	104, 540, 543, 659, 668, 938
BstNI	CCWGG	1 cut(s)	1143
BstNSI	RCATGY	2 cut(s)	165, 999
BstSCI	CCNGG	4 cut(s)	36, 245, 1079, 1141
BstSFI	CTRYAG	2 cut(s)	187, 783
BstSLI	GKGCMC	2 cut(s)	70, 904
BstUI	CGCG	2 cut(s)	365, 512
BstV1I	GCAGC	1 cut(s)	775
BstV2I	GAAGAC	1 cut(s)	522
BstX2I	RGATCY	2 cut(s)	15, 614
BstYI	RGATCY	2 cut(s)	15, 614
BstZI	CGGCCG	1 cut(s)	39
BsuI	GTATCC	2 cut(s)	695, 818
BsuRI	GGCC	8 cut(s)	41, 45, 245, 255, 494, 653, 1079, 1089
BtgI	CCRYGG	1 cut(s)	657
BtrI	CACGTC	1 cut(s)	445
BtsCI	GGATG	3 cut(s)	572, 697, 820
BtsIMutI	CAGTG	2 cut(s)	165, 999
Cac8I	GCNNGC	5 cut(s)	43, 163, 492, 496, 997
CfoI	GCGC	2 cut(s)	25, 367
Cfr10I	RCCGGY	2 cut(s)	41, 490
Cfr13I	GGNCC	1 cut(s)	44
CseI	GACGC	2 cut(s)	518, 651
CsiI	ACCWGGT	1 cut(s)	1141
Csp6I	GTAC	2 cut(s)	192, 1026
CspCI	CAANNNNNGTGG	4 cut(s)	8, 43, 592, 627
CviAII	CATG	5 cut(s)	162, 369, 579, 590, 996
CviQI	GTAC	2 cut(s)	192, 1026
DdeI	CTNAG	7 cut(s)	144, 207, 707, 830, 978, 1041, 1131
DpnI	GATC	3 cut(s)	17, 296, 616
DpnII	GATC	3 cut(s)	15, 294, 614
DraI	TTTAAA	3 cut(s)	79, 459, 913
EaeI	YGGCCR	4 cut(s)	39, 243, 492, 1077
EagI	CGGCCG	1 cut(s)	39
Eam1104I	CTCTTC	2 cut(s)	404, 409
EarI	CTCTTC	2 cut(s)	404, 409
EclXI	CGGCCG	1 cut(s)	39
Eco147I	AGGCCT	2 cut(s)	255, 1089
Eco47III	AGCGCT	1 cut(s)	24
Eco52I	CGGCCG	1 cut(s)	39
EcoRI	GAATTC	1 cut(s)	888
EcoRII	CCWGG	1 cut(s)	1141
Esp3I	CGTCTC	1 cut(s)	419
FaeI	CATG	5 cut(s)	165, 372, 582, 593, 999
FaqI	GGGAC	2 cut(s)	262, 1096
FatI	CATG	5 cut(s)	161, 368, 578, 589, 995
FauI	CCCGC	1 cut(s)	367
FokI	GGATG	3 cut(s)	559, 704, 827
FseI	GGCCGGCC	1 cut(s)	45
GlaI	GCGC	2 cut(s)	24, 366
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	8 cut(s)	41, 45, 245, 255, 494, 653, 1079, 1089
HapII	CCGG	5 cut(s)	38, 42, 246, 491, 1080
HgaI	GACGC	2 cut(s)	518, 651
HhaI	GCGC	2 cut(s)	25, 367
Hin1I	GRCGYC	2 cut(s)	5, 662
Hin1II	CATG	5 cut(s)	165, 372, 582, 593, 999
Hin6I	GCGC	2 cut(s)	23, 365
HinP1I	GCGC	2 cut(s)	23, 365
HincII	GTYRAC	2 cut(s)	232, 1066
HindII	GTYRAC	2 cut(s)	232, 1066
HinfI	GANTC	3 cut(s)	217, 566, 1051
HpaII	CCGG	5 cut(s)	38, 42, 246, 491, 1080
HphI	GGTGA	4 cut(s)	414, 463, 685, 808
Hpy166II	GTNNAC	2 cut(s)	232, 1066
Hpy188I	TCNGA	4 cut(s)	508, 756, 879, 1132
Hpy188III	TCNNGA	2 cut(s)	292, 847
Hpy8I	GTNNAC	2 cut(s)	232, 1066
Hpy99I	CGWCG	1 cut(s)	512
HpyAV	CCTTC	1 cut(s)	759
HpyCH4III	ACNGT	4 cut(s)	196, 432, 608, 1030
HpyCH4IV	ACGT	3 cut(s)	234, 444, 1068
HpyCH4V	TGCA	5 cut(s)	161, 165, 995, 999, 1151
HpyF10VI	GCNNNNNNNGC	6 cut(s)	104, 540, 543, 659, 668, 938
HpyF3I	CTNAG	7 cut(s)	144, 207, 707, 830, 978, 1041, 1131
HpySE526I	ACGT	3 cut(s)	234, 444, 1068
Hsp92I	GRCGYC	2 cut(s)	5, 662
Hsp92II	CATG	5 cut(s)	165, 372, 582, 593, 999
HspAI	GCGC	2 cut(s)	23, 365
KroI	GCCGGC	2 cut(s)	41, 490
KroNI	GCCGGC	2 cut(s)	43, 492
Kzo9I	GATC	3 cut(s)	15, 294, 614
LmnI	GCTCC	3 cut(s)	377, 509, 773
Lsp1109I	GCAGC	1 cut(s)	775
LweI	GCATC	2 cut(s)	96, 930
MabI	ACCWGGT	1 cut(s)	1141
MaeII	ACGT	3 cut(s)	234, 444, 1068
MaeIII	GTNAC	2 cut(s)	180, 1014
MalI	GATC	3 cut(s)	17, 296, 616
MboI	GATC	3 cut(s)	15, 294, 614
MboII	GAAGA	4 cut(s)	391, 396, 527, 959
MflI	RGATCY	2 cut(s)	15, 614
MhlI	GDGCHC	2 cut(s)	70, 904
MluCI	AATT	5 cut(s)	171, 676, 799, 888, 1005
MlyI	GAGTC	1 cut(s)	560
MmeI	TCCRAC	2 cut(s)	530, 531
MroNI	GCCGGC	2 cut(s)	41, 490
MroXI	GAANNNNTTC	2 cut(s)	287, 966
MseI	TTAA	5 cut(s)	78, 458, 687, 810, 912
MslI	CAYNNNNRTG	4 cut(s)	577, 583, 744, 867
MspA1I	CMGCKG	2 cut(s)	498, 788
MspCI	CTTAAG	2 cut(s)	686, 809
MspI	CCGG	5 cut(s)	38, 42, 246, 491, 1080
MspR9I	CCNGG	4 cut(s)	38, 247, 1081, 1143
MvaI	CCWGG	1 cut(s)	1143
MvnI	CGCG	2 cut(s)	365, 512
MwoI	GCNNNNNNNGC	6 cut(s)	104, 540, 543, 659, 668, 938
NaeI	GCCGGC	2 cut(s)	43, 492
NciI	CCSGG	3 cut(s)	38, 247, 1081
NdeII	GATC	3 cut(s)	15, 294, 614
NgoMIV	GCCGGC	2 cut(s)	41, 490
NlaIII	CATG	5 cut(s)	165, 372, 582, 593, 999
NlaIV	GGNNCC	4 cut(s)	32, 69, 505, 903
NmuCI	GTSAC	2 cut(s)	180, 1014
NspI	RCATGY	2 cut(s)	165, 999
PaeI	GCATGC	2 cut(s)	165, 999
PceI	AGGCCT	2 cut(s)	255, 1089
PdiI	GCCGGC	2 cut(s)	43, 492
PdmI	GAANNNNTTC	2 cut(s)	287, 966
PfeI	GAWTC	2 cut(s)	217, 1051
PleI	GAGTC	1 cut(s)	560
PpsI	GAGTC	1 cut(s)	560
Psp6I	CCWGG	1 cut(s)	1141
PspGI	CCWGG	1 cut(s)	1141
PspN4I	GGNNCC	4 cut(s)	32, 69, 505, 903
PspPI	GGNCC	1 cut(s)	44
PsuI	RGATCY	2 cut(s)	15, 614
PvuII	CAGCTG	1 cut(s)	788
RigI	GGCCGGCC	1 cut(s)	45
RsaI	GTAC	2 cut(s)	193, 1027
RsaNI	GTAC	2 cut(s)	192, 1026
RseI	CAYNNNNRTG	4 cut(s)	577, 583, 744, 867
SaqAI	TTAA	5 cut(s)	78, 458, 687, 810, 912
Sau3AI	GATC	3 cut(s)	15, 294, 614
Sau96I	GGNCC	1 cut(s)	44
ScaI	AGTACT	1 cut(s)	193
SchI	GAGTC	1 cut(s)	560
ScrFI	CCNGG	4 cut(s)	38, 247, 1081, 1143
SduI	GDGCHC	2 cut(s)	70, 904
SexAI	ACCWGGT	1 cut(s)	1141
SfaNI	GCATC	2 cut(s)	96, 930
SfcI	CTRYAG	2 cut(s)	187, 783
SmiMI	CAYNNNNRTG	4 cut(s)	577, 583, 744, 867
SmlI	CTYRAG	2 cut(s)	686, 809
SmoI	CTYRAG	2 cut(s)	686, 809
SphI	GCATGC	2 cut(s)	165, 999
Sse9I	AATT	5 cut(s)	171, 676, 799, 888, 1005
SseBI	AGGCCT	2 cut(s)	255, 1089
SspI	AATATT	2 cut(s)	103, 937
StuI	AGGCCT	2 cut(s)	255, 1089
StyD4I	CCNGG	4 cut(s)	36, 245, 1079, 1141
TaaI	ACNGT	4 cut(s)	196, 432, 608, 1030
TaiI	ACGT	3 cut(s)	237, 447, 1071
TaqI	TCGA	2 cut(s)	564, 848
TasI	AATT	5 cut(s)	171, 676, 799, 888, 1005
TatI	WGTACW	2 cut(s)	191, 1025
TfiI	GAWTC	2 cut(s)	217, 1051
Tru1I	TTAA	5 cut(s)	78, 458, 687, 810, 912
Tru9I	TTAA	5 cut(s)	78, 458, 687, 810, 912
TscAI	CASTG	2 cut(s)	172, 1006
TseFI	GTSAC	2 cut(s)	180, 1014
TseI	GCWGC	1 cut(s)	788
Tsp45I	GTSAC	2 cut(s)	180, 1014
TspDTI	ATGAA	3 cut(s)	47, 126, 881
TspGWI	ACGGA	5 cut(s)	286, 295, 401, 646, 1120
TspRI	CASTG	2 cut(s)	172, 1006
Vha464I	CTTAAG	2 cut(s)	686, 809
XapI	RAATTY	1 cut(s)	888
XceI	RCATGY	2 cut(s)	165, 999
XmnI	GAANNNNTTC	2 cut(s)	287, 966
ZrmI	AGTACT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.