Rmu_ssc0000226.1_g000029

Ammonium transporter 1 member 3

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000226.1
N/A
Physical Location & Seq
Forward (+)
101430 .. 101777
348 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 348 bp
atgggaagaaagcgtgacaagctccatcaacaccatctatctcctcttctctgcctatcttgtcgctttgccatgctctgtgctggctctgttcgatgcaagaatgccacaaacataatgctctccaatgtagtggatgccattgtaggtagcctctctttcaatatctttggatttgcttttgcatttggagaagtctccaattccaacgctttcattggtaccaatttctttgctctcaaagacattcccagtagctcatcttatggctacagcttcctccttttccaatggggatttgctatagcctatagctgttgctggcataacaagtggttctatagctga

Protein Analysis

115

Amino Acids

12.9

Weight (kDa)

9.04

Isoelectric Point (pI)

36.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ammonium_transp PF00909 20 - 102 6.7e-17 Ammonium Transporter Family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 221
AccB1I GGYRCC 1 cut(s) 221
AfaI GTAC 1 cut(s) 223
AgsI TTSAA 1 cut(s) 163
AluBI AGCT 5 cut(s) 22, 258, 276, 315, 345
AluI AGCT 5 cut(s) 22, 258, 276, 315, 345
Alw26I GTCTC 1 cut(s) 202
Asp718I GGTACC 1 cut(s) 221
BanI GGYRCC 1 cut(s) 221
BccI CCATC 2 cut(s) 33, 42
BcoDI GTCTC 1 cut(s) 202
BfmI CTRYAG 4 cut(s) 271, 303, 310, 340
BmiI GGNNCC 1 cut(s) 223
BmrI ACTGGG 1 cut(s) 246
BmsI GCATC 2 cut(s) 86, 127
BmuI ACTGGG 1 cut(s) 246
Bse1I ACTGG 1 cut(s) 252
BseGI GGATG 1 cut(s) 142
BseNI ACTGG 1 cut(s) 252
BseRI GAGGAG 1 cut(s) 33
BshNI GGYRCC 1 cut(s) 221
BsmAI GTCTC 1 cut(s) 202
BsmI GAATGC 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 223
BspT107I GGYRCC 1 cut(s) 221
BsrI ACTGG 1 cut(s) 252
Bst6I CTCTTC 1 cut(s) 51
BstC8I GCNNGC 2 cut(s) 85, 323
BstF5I GGATG 1 cut(s) 142
BstMAI GTCTC 1 cut(s) 202
BstMWI GCNNNNNNNGC 1 cut(s) 19
BstSFI CTRYAG 4 cut(s) 271, 303, 310, 340
BstXI CCANNNNNNTGG 1 cut(s) 133
BtsCI GGATG 1 cut(s) 142
Cac8I GCNNGC 2 cut(s) 85, 323
Csp6I GTAC 1 cut(s) 222
CviAII CATG 1 cut(s) 73
CviJI RGCY 9 cut(s) 22, 87, 153, 258, 270, 276, 308, 315, 345
CviKI_1 RGCY 9 cut(s) 22, 87, 153, 258, 270, 276, 308, 315, 345
CviQI GTAC 1 cut(s) 222
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
FaeI CATG 1 cut(s) 76
FaiI YATR 7 cut(s) 74, 116, 267, 305, 312, 327, 342
FatI CATG 1 cut(s) 72
FokI GGATG 1 cut(s) 149
Hin1II CATG 1 cut(s) 76
HpyCH4V TGCA 2 cut(s) 99, 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 19
Hsp92II CATG 1 cut(s) 76
KpnI GGTACC 1 cut(s) 225
LmnI GCTCC 1 cut(s) 27
LpnPI CCDG 3 cut(s) 69, 265, 307
LweI GCATC 2 cut(s) 86, 127
MaeIII GTNAC 1 cut(s) 14
MboII GAAGA 2 cut(s) 18, 38
MluCI AATT 2 cut(s) 202, 226
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 3 cut(s) 54, 164, 290
Mva1269I GAATGC 1 cut(s) 109
MwoI GCNNNNNNNGC 1 cut(s) 19
NlaIII CATG 1 cut(s) 76
NlaIV GGNNCC 1 cut(s) 223
NmuCI GTSAC 1 cut(s) 14
PctI GAATGC 1 cut(s) 109
PspN4I GGNNCC 1 cut(s) 223
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
SetI ASST 6 cut(s) 24, 151, 260, 278, 317, 347
SfaNI GCATC 2 cut(s) 86, 127
SfcI CTRYAG 4 cut(s) 271, 303, 310, 340
SgeI CNNG 9 cut(s) 26, 31, 72, 85, 96, 112, 264, 334, 343
Sse9I AATT 2 cut(s) 202, 226
TaqI TCGA 1 cut(s) 94
TasI AATT 2 cut(s) 202, 226
TseFI GTSAC 1 cut(s) 14
Tsp45I GTSAC 1 cut(s) 14
TspDTI ATGAA 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.