Rmu_ssc0000243.1_g000028

UDP-glucuronic acid decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000243.1
N/A
Physical Location & Seq
Reverse (-)
105470 .. 105811
342 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 342 bp
ctgttcatccttgttggaattctcgtcggctccaccttcttcatcctccagcccactctctcccgcctctcccttccgagcccaatccctgcatccctagatccttctcctccgttcaataccgaatcaacaacgcctccttctccaccgatctcccccacaacgccggcagagtccccgccaggcgccagcctcggtaagagcaggctcaggatcgttgtcaccggtggcgccggcttcattgggtctcacctcatcgataagttactctctagagagaacgatgtgattgtcatcgacaatttgttccccgggaggaaagagaatgtggtgcaccattga

Protein Analysis

113

Amino Acids

11.93

Weight (kDa)

7.03

Isoelectric Point (pI)

63.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 72 - 105 1.7e-07 NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd PF16363 74 - 102 3.7e-06 GDP-mannose 4,6 dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 185, 230
AciI CCGC 2 cut(s) 64, 179
AclWI GGATC 2 cut(s) 95, 221
AcsI RAATTY 1 cut(s) 18
AcyI GRCGYC 2 cut(s) 186, 231
AgeI ACCGGT 1 cut(s) 224
AgsI TTSAA 1 cut(s) 118
AjnI CCWGG 1 cut(s) 181
Alw21I GWGCWC 1 cut(s) 336
Alw26I GTCTC 1 cut(s) 252
Alw44I GTGCAC 1 cut(s) 332
AlwI GGATC 2 cut(s) 95, 221
Ama87I CYCGRG 1 cut(s) 311
ApaLI GTGCAC 1 cut(s) 332
ApoI RAATTY 1 cut(s) 18
AsiGI ACCGGT 1 cut(s) 224
AspLEI GCGC 2 cut(s) 188, 233
AsuC2I CCSGG 2 cut(s) 312, 313
AsuHPI GGTGA 2 cut(s) 214, 242
AvaI CYCGRG 1 cut(s) 311
BaeGI GKGCMC 1 cut(s) 336
BanI GGYRCC 2 cut(s) 185, 230
BanII GRGCYC 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 336
BciT130I CCWGG 1 cut(s) 183
BcnI CCSGG 2 cut(s) 312, 313
BcoDI GTCTC 1 cut(s) 252
BfaI CTAG 2 cut(s) 98, 273
BfoI RGCGCY 2 cut(s) 189, 234
Bme1390I CCNGG 3 cut(s) 183, 312, 313
BmeT110I CYCGRG 1 cut(s) 311
BmiI GGNNCC 3 cut(s) 31, 187, 232
BmrFI CCNGG 3 cut(s) 183, 312, 313
BmsI GCATC 1 cut(s) 101
BpmI CTGGAG 1 cut(s) 32
Bpu10I CCTNAGC 1 cut(s) 209
BpuMI CCSGG 2 cut(s) 312, 313
Bsa29I ATCGAT 1 cut(s) 258
BsaBI GATNNNNATC 1 cut(s) 293
BsaHI GRCGYC 2 cut(s) 186, 231
BsaI GGTCTC 1 cut(s) 252
BsaJI CCNNGG 3 cut(s) 193, 310, 311
BsaWI WCCGGW 1 cut(s) 224
BsaXI ACNNNNNCTCC 2 cut(s) 121, 151
Bse118I RCCGGY 3 cut(s) 166, 224, 233
Bse8I GATNNNNATC 1 cut(s) 293
BseBI CCWGG 1 cut(s) 183
BseCI ATCGAT 1 cut(s) 258
BseDI CCNNGG 3 cut(s) 193, 310, 311
BseGI GGATG 3 cut(s) 6, 42, 92
BseJI GATNNNNATC 1 cut(s) 293
BseMII CTCAG 1 cut(s) 223
BseRI GAGGAG 1 cut(s) 99
BseSI GKGCMC 1 cut(s) 336
BshNI GGYRCC 2 cut(s) 185, 230
BshTI ACCGGT 1 cut(s) 224
BshVI ATCGAT 1 cut(s) 258
BsiHKAI GWGCWC 1 cut(s) 336
BsiHKCI CYCGRG 1 cut(s) 311
BsiSI CCGG 4 cut(s) 167, 225, 234, 312
BslFI GGGAC 1 cut(s) 160
BsmAI GTCTC 1 cut(s) 252
BsmFI GGGAC 1 cut(s) 160
Bso31I GGTCTC 1 cut(s) 252
BsoBI CYCGRG 1 cut(s) 311
Bsp1286I GDGCHC 2 cut(s) 83, 336
Bsp143I GATC 3 cut(s) 100, 150, 213
BspACI CCGC 2 cut(s) 64, 179
BspCNI CTCAG 1 cut(s) 222
BspDI ATCGAT 1 cut(s) 258
BspLI GGNNCC 3 cut(s) 31, 187, 232
BspPI GGATC 2 cut(s) 95, 221
BspT107I GGYRCC 2 cut(s) 185, 230
BspTNI GGTCTC 1 cut(s) 252
BsrFI RCCGGY 3 cut(s) 166, 224, 233
BssAI RCCGGY 3 cut(s) 166, 224, 233
BssECI CCNNGG 3 cut(s) 193, 310, 311
BssMI GATC 3 cut(s) 100, 150, 213
BssNI GRCGYC 2 cut(s) 186, 231
Bst2UI CCWGG 1 cut(s) 183
BstACI GRCGYC 2 cut(s) 186, 231
BstC8I GCNNGC 4 cut(s) 168, 190, 206, 235
BstDEI CTNAG 1 cut(s) 209
BstF5I GGATG 3 cut(s) 6, 42, 92
BstH2I RGCGCY 2 cut(s) 189, 234
BstHHI GCGC 2 cut(s) 188, 233
BstKTI GATC 3 cut(s) 103, 153, 216
BstMAI GTCTC 1 cut(s) 252
BstMBI GATC 3 cut(s) 100, 150, 213
BstNI CCWGG 1 cut(s) 183
BstSCI CCNGG 3 cut(s) 181, 310, 311
BstSLI GKGCMC 1 cut(s) 336
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
Bsu15I ATCGAT 1 cut(s) 258
BsuTUI ATCGAT 1 cut(s) 258
BtsCI GGATG 3 cut(s) 6, 42, 92
Cac8I GCNNGC 4 cut(s) 168, 190, 206, 235
CfoI GCGC 2 cut(s) 188, 233
Cfr10I RCCGGY 3 cut(s) 166, 224, 233
Cfr9I CCCGGG 1 cut(s) 311
ClaI ATCGAT 1 cut(s) 258
CspAI ACCGGT 1 cut(s) 224
CviJI RGCY 6 cut(s) 30, 52, 81, 192, 208, 237
CviKI_1 RGCY 6 cut(s) 30, 52, 81, 192, 208, 237
DdeI CTNAG 1 cut(s) 209
DinI GGCGCC 2 cut(s) 187, 232
DpnI GATC 3 cut(s) 102, 152, 215
DpnII GATC 3 cut(s) 100, 150, 213
Eco24I GRGCYC 1 cut(s) 83
Eco31I GGTCTC 1 cut(s) 252
Eco88I CYCGRG 1 cut(s) 311
EcoRI GAATTC 1 cut(s) 18
EcoRII CCWGG 1 cut(s) 181
EcoT38I GRGCYC 1 cut(s) 83
EgeI GGCGCC 2 cut(s) 187, 232
EheI GGCGCC 2 cut(s) 187, 232
FaqI GGGAC 1 cut(s) 160
FauI CCCGC 2 cut(s) 71, 186
FokI GGATG 2 cut(s) 29, 79
FriOI GRGCYC 1 cut(s) 83
FspBI CTAG 2 cut(s) 98, 273
GlaI GCGC 2 cut(s) 187, 232
GsuI CTGGAG 1 cut(s) 32
HaeII RGCGCY 2 cut(s) 189, 234
HapII CCGG 4 cut(s) 167, 225, 234, 312
HhaI GCGC 2 cut(s) 188, 233
Hin1I GRCGYC 2 cut(s) 186, 231
Hin6I GCGC 2 cut(s) 186, 231
HinP1I GCGC 2 cut(s) 186, 231
HinfI GANTC 2 cut(s) 125, 173
HpaII CCGG 4 cut(s) 167, 225, 234, 312
HphI GGTGA 2 cut(s) 214, 242
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 1 cut(s) 78
Hpy188III TCNNGA 2 cut(s) 211, 273
Hpy8I GTNNAC 1 cut(s) 334
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 4 cut(s) 46, 83, 114, 150
HpyCH4V TGCA 2 cut(s) 92, 334
HpyF3I CTNAG 1 cut(s) 209
Hsp92I GRCGYC 2 cut(s) 186, 231
HspAI GCGC 2 cut(s) 186, 231
KasI GGCGCC 2 cut(s) 185, 230
KroI GCCGGC 2 cut(s) 166, 233
KroNI GCCGGC 2 cut(s) 168, 235
Kzo9I GATC 3 cut(s) 100, 150, 213
LmnI GCTCC 1 cut(s) 35
LweI GCATC 1 cut(s) 101
MaeI CTAG 2 cut(s) 98, 273
MaeIII GTNAC 2 cut(s) 220, 264
MalI GATC 3 cut(s) 102, 152, 215
MboI GATC 3 cut(s) 100, 150, 213
MboII GAAGA 1 cut(s) 31
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 2 cut(s) 83, 336
MluCI AATT 2 cut(s) 18, 301
Mly113I GGCGCC 2 cut(s) 186, 231
MlyI GAGTC 1 cut(s) 182
MnlI CCTC 7 cut(s) 56, 77, 120, 147, 203, 263, 309
MroNI GCCGGC 2 cut(s) 166, 233
MspI CCGG 4 cut(s) 167, 225, 234, 312
MspR9I CCNGG 3 cut(s) 183, 312, 313
MvaI CCWGG 1 cut(s) 183
NaeI GCCGGC 2 cut(s) 168, 235
NarI GGCGCC 2 cut(s) 186, 231
NciI CCSGG 2 cut(s) 312, 313
NdeII GATC 3 cut(s) 100, 150, 213
NgoMIV GCCGGC 2 cut(s) 166, 233
NlaIV GGNNCC 3 cut(s) 31, 187, 232
NmuCI GTSAC 1 cut(s) 220
PdiI GCCGGC 2 cut(s) 168, 235
PfeI GAWTC 1 cut(s) 125
PinAI ACCGGT 1 cut(s) 224
PleI GAGTC 1 cut(s) 181
PluTI GGCGCC 2 cut(s) 189, 234
PpsI GAGTC 1 cut(s) 181
Psp6I CCWGG 1 cut(s) 181
PspGI CCWGG 1 cut(s) 181
PspN4I GGNNCC 3 cut(s) 31, 187, 232
PsuI RGATCY 1 cut(s) 100
Sau3AI GATC 3 cut(s) 100, 150, 213
SchI GAGTC 1 cut(s) 182
ScrFI CCNGG 3 cut(s) 183, 312, 313
SduI GDGCHC 2 cut(s) 83, 336
SetI ASST 2 cut(s) 38, 255
SfaNI GCATC 1 cut(s) 101
SfoI GGCGCC 2 cut(s) 187, 232
SgrAI CRCCGGYG 1 cut(s) 224
SmaI CCCGGG 1 cut(s) 313
Sse9I AATT 2 cut(s) 18, 301
SsiI CCGC 2 cut(s) 64, 179
SspDI GGCGCC 2 cut(s) 185, 230
SspMI CTAG 2 cut(s) 98, 273
StyD4I CCNGG 3 cut(s) 181, 310, 311
TaqI TCGA 2 cut(s) 258, 297
TasI AATT 2 cut(s) 18, 301
TfiI GAWTC 1 cut(s) 125
TseFI GTSAC 1 cut(s) 220
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 2 cut(s) 31, 229
TspGWI ACGGA 1 cut(s) 102
TspMI CCCGGG 1 cut(s) 311
VneI GTGCAC 1 cut(s) 332
XapI RAATTY 1 cut(s) 18
XbaI TCTAGA 1 cut(s) 272
XmaI CCCGGG 1 cut(s) 311
XspI CTAG 2 cut(s) 98, 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.