Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000249.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

13546 .. 15145

Gene Structure 1600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

atgtcacagtccgctgagcttagtggcacaacttggtttaatctgacagctattcagcttggtcttgtggttagtggttccctctatggagctctttttggttctctccttgtctacccaattgctgatttccttggaaggaggagagaactcatcacagcagctgcactttatctccttgggggtctgatcaccggatgtactccgggacttggtgttctcttagtagggcgtcttttatatggcattggtattggaatggccatgcatggggctccactctatattgctgaaacatgtccatctcaaattcgtggaactctagtgtcattgaacgagctcttcatagttttggggatcctgttgggttatttagtaggaagctttcagattgatgcagttggggggtggcgttacatgtatggaataagtgctcccattgctttacttatgggaataggcatgtggattctcccaccctctcctcgctggttgcttcttagggcagctcgaggtaaagggtctgtgaaagaatacaaagaaaaagccgttcttgccttgagcaagctgagaggccggcctccgggtgacaaagtgtctgaaaagcaaatagaagagacatttgttactttgaagtcagcctatgcagatcaggaatcagaggggagtttgatggaggtctttcaaggccctagtttgaaggctttcataattgctgcggataattttgatttacgagggaatgctgtaggaagctccactgtcgggtctgactattctctgtttctgactgtttctgcagttcgtgatgacagggatagctgtcctgaaagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

278

Amino Acids

29.69

Weight (kDa)

6.61

Isoelectric Point (pI)

39.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	13 - 194	1.6e-24	Major Facilitator Superfamily
Sugar_tr	PF00083	16 - 230	1.3e-43	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	114
AciI	CCGC	2 cut(s)	12, 719
AclWI	GGATC	2 cut(s)	352, 365
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	1 cut(s)	309
AcyI	GRCGYC	1 cut(s)	232
AfaI	GTAC	1 cut(s)	202
AfiI	CCNNNNNNNGG	4 cut(s)	212, 270, 583, 765
AflIII	ACRYGT	2 cut(s)	296, 417
AgsI	TTSAA	4 cut(s)	334, 634, 686, 700
AhdI	GACNNNNNGTC	1 cut(s)	595
AloI	GAACNNNNNNTCC	2 cut(s)	201, 233
Alw21I	GWGCWC	3 cut(s)	94, 342, 436
Alw26I	GTCTC	1 cut(s)	611
AlwI	GGATC	2 cut(s)	352, 365
AlwNI	CAGNNNCTG	1 cut(s)	164
Ama87I	CYCGRG	1 cut(s)	510
AoxI	GGCC	4 cut(s)	261, 574, 578, 688
ApeKI	GCWGC	4 cut(s)	161, 164, 506, 716
ApoI	RAATTY	1 cut(s)	309
Asp700I	GAANNNNTTC	1 cut(s)	704
AspS9I	GGNCC	1 cut(s)	689
AsuC2I	CCSGG	2 cut(s)	207, 585
AsuHPI	GGTGA	2 cut(s)	184, 599
AvaI	CYCGRG	1 cut(s)	510
BalI	TGGCCA	1 cut(s)	263
BamHI	GGATCC	1 cut(s)	357
BanII	GRGCYC	3 cut(s)	94, 277, 342
Bbv12I	GWGCWC	3 cut(s)	94, 342, 436
BbvI	GCAGC	4 cut(s)	151, 173, 518, 703
BccI	CCATC	2 cut(s)	310, 667
BceAI	ACGGC	1 cut(s)	533
BclI	TGATCA	1 cut(s)	189
BcnI	CCSGG	2 cut(s)	207, 585
BcoDI	GTCTC	1 cut(s)	611
BfaI	CTAG	2 cut(s)	323, 693
BfmI	CTRYAG	2 cut(s)	747, 798
BisI	GCNGC	4 cut(s)	162, 165, 507, 717
BlpI	GCTNAGC	1 cut(s)	15
BlsI	GCNGC	4 cut(s)	163, 166, 508, 718
Bme1390I	CCNGG	2 cut(s)	207, 585
BmeRI	GACNNNNNGTC	1 cut(s)	595
BmeT110I	CYCGRG	1 cut(s)	510
BmgT120I	GGNCC	1 cut(s)	689
BmiI	GGNNCC	3 cut(s)	79, 276, 359
BmrFI	CCNGG	2 cut(s)	207, 585
BmsI	GCATC	1 cut(s)	385
Bpu1102I	GCTNAGC	1 cut(s)	15
BpuEI	CTTGAG	1 cut(s)	580
BpuMI	CCSGG	2 cut(s)	207, 585
BsaHI	GRCGYC	1 cut(s)	232
BsaJI	CCNNGG	2 cut(s)	133, 178
BsaWI	WCCGGW	1 cut(s)	194
BsaXI	ACNNNNNCTCC	2 cut(s)	159, 189
Bsc4I	CCNNNNNNNGG	4 cut(s)	212, 270, 583, 765
Bse118I	RCCGGY	1 cut(s)	576
Bse3DI	GCAATG	1 cut(s)	438
BseDI	CCNNGG	2 cut(s)	133, 178
BseGI	GGATG	1 cut(s)	203
BseLI	CCNNNNNNNGG	4 cut(s)	212, 270, 583, 765
BseMI	GCAATG	1 cut(s)	438
BseMII	CTCAG	2 cut(s)	6, 560
BseRI	GAGGAG	2 cut(s)	157, 474
BseXI	GCAGC	4 cut(s)	151, 173, 518, 703
BsgI	GTGCAG	1 cut(s)	150
BshFI	GGCC	4 cut(s)	263, 576, 580, 690
BsiHKAI	GWGCWC	3 cut(s)	94, 342, 436
BsiHKCI	CYCGRG	1 cut(s)	510
BsiSI	CCGG	4 cut(s)	195, 206, 577, 584
BslFI	GGGAC	1 cut(s)	222
BslI	CCNNNNNNNGG	4 cut(s)	212, 270, 583, 765
BsmAI	GTCTC	1 cut(s)	611
BsmFI	GGGAC	1 cut(s)	222
BsmI	GAATGC	1 cut(s)	748
BsnI	GGCC	4 cut(s)	263, 576, 580, 690
BsoBI	CYCGRG	1 cut(s)	510
Bsp1286I	GDGCHC	4 cut(s)	94, 277, 342, 436
Bsp143I	GATC	3 cut(s)	189, 357, 649
Bsp1720I	GCTNAGC	1 cut(s)	15
BspACI	CCGC	2 cut(s)	12, 719
BspANI	GGCC	4 cut(s)	263, 576, 580, 690
BspCNI	CTCAG	2 cut(s)	7, 561
BspLI	GGNNCC	3 cut(s)	79, 276, 359
BspMAI	CTGCAG	1 cut(s)	802
BspPI	GGATC	2 cut(s)	352, 365
BspQI	GCTCTTC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	438
BsrFI	RCCGGY	1 cut(s)	576
BssAI	RCCGGY	1 cut(s)	576
BssECI	CCNNGG	2 cut(s)	133, 178
BssMI	GATC	3 cut(s)	189, 357, 649
BssNI	GRCGYC	1 cut(s)	232
BssT1I	CCWWGG	2 cut(s)	133, 178
Bst4CI	ACNGT	3 cut(s)	9, 763, 793
Bst6I	CTCTTC	2 cut(s)	347, 609
BstACI	GRCGYC	1 cut(s)	232
BstC8I	GCNNGC	2 cut(s)	566, 578
BstDEI	CTNAG	5 cut(s)	15, 20, 223, 500, 569
BstF5I	GGATG	1 cut(s)	203
BstKTI	GATC	3 cut(s)	192, 360, 652
BstMAI	GTCTC	1 cut(s)	611
BstMBI	GATC	3 cut(s)	189, 357, 649
BstMWI	GCNNNNNNNGC	2 cut(s)	440, 554
BstNSI	RCATGY	3 cut(s)	300, 421, 466
BstSCI	CCNGG	2 cut(s)	205, 583
BstSFI	CTRYAG	2 cut(s)	747, 798
BstV1I	GCAGC	4 cut(s)	151, 173, 518, 703
BstX2I	RGATCY	1 cut(s)	357
BstYI	RGATCY	1 cut(s)	357
BsuRI	GGCC	4 cut(s)	263, 576, 580, 690
BtsCI	GGATG	1 cut(s)	203
BtsIMutI	CAGTG	1 cut(s)	759
Cac8I	GCNNGC	2 cut(s)	566, 578
CaiI	CAGNNNCTG	1 cut(s)	164
Cfr10I	RCCGGY	1 cut(s)	576
Cfr13I	GGNCC	1 cut(s)	689
CseI	GACGC	1 cut(s)	221
Csp6I	GTAC	1 cut(s)	201
CviAII	CATG	5 cut(s)	265, 269, 297, 418, 463
CviQI	GTAC	1 cut(s)	201
DdeI	CTNAG	5 cut(s)	15, 20, 223, 500, 569
DpnI	GATC	3 cut(s)	191, 359, 651
DpnII	GATC	3 cut(s)	189, 357, 649
DriI	GACNNNNNGTC	1 cut(s)	595
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	2 cut(s)	347, 609
Eam1105I	GACNNNNNGTC	1 cut(s)	595
EarI	CTCTTC	2 cut(s)	347, 609
Ecl136II	GAGCTC	2 cut(s)	92, 340
Eco130I	CCWWGG	2 cut(s)	133, 178
Eco24I	GRGCYC	3 cut(s)	94, 277, 342
Eco53kI	GAGCTC	2 cut(s)	92, 340
Eco88I	CYCGRG	1 cut(s)	510
EcoICRI	GAGCTC	2 cut(s)	92, 340
EcoO109I	RGGNCCY	1 cut(s)	689
EcoT14I	CCWWGG	2 cut(s)	133, 178
EcoT22I	ATGCAT	1 cut(s)	270
EcoT38I	GRGCYC	3 cut(s)	94, 277, 342
ErhI	CCWWGG	2 cut(s)	133, 178
FaeI	CATG	5 cut(s)	268, 272, 300, 421, 466
FalI	AAGNNNNNCTT	2 cut(s)	537, 569
FaqI	GGGAC	1 cut(s)	222
FatI	CATG	5 cut(s)	264, 268, 296, 417, 462
FbaI	TGATCA	1 cut(s)	189
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	4 cut(s)	162, 165, 507, 717
FokI	GGATG	1 cut(s)	210
FriOI	GRGCYC	3 cut(s)	94, 277, 342
FseI	GGCCGGCC	1 cut(s)	580
Fsp4HI	GCNGC	4 cut(s)	162, 165, 507, 717
FspBI	CTAG	2 cut(s)	323, 693
GluI	GCNGC	4 cut(s)	162, 165, 507, 717
HaeIII	GGCC	4 cut(s)	263, 576, 580, 690
HapII	CCGG	4 cut(s)	195, 206, 577, 584
HgaI	GACGC	1 cut(s)	221
Hin1I	GRCGYC	1 cut(s)	232
Hin1II	CATG	5 cut(s)	268, 272, 300, 421, 466
HindIII	AAGCTT	1 cut(s)	382
HinfI	GANTC	2 cut(s)	469, 656
HpaII	CCGG	4 cut(s)	195, 206, 577, 584
HphI	GGTGA	2 cut(s)	184, 599
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	7 cut(s)	45, 189, 390, 601, 661, 772, 789
Hpy188III	TCNNGA	3 cut(s)	653, 806, 827
Hpy8I	GTNNAC	1 cut(s)	115
HpyAV	CCTTC	2 cut(s)	132, 694
HpyCH4III	ACNGT	3 cut(s)	9, 763, 793
HpyCH4V	TGCA	5 cut(s)	167, 268, 398, 647, 800
HpyF10VI	GCNNNNNNNGC	2 cut(s)	440, 554
HpyF3I	CTNAG	5 cut(s)	15, 20, 223, 500, 569
Hsp92I	GRCGYC	1 cut(s)	232
Hsp92II	CATG	5 cut(s)	268, 272, 300, 421, 466
KroI	GCCGGC	1 cut(s)	576
KroNI	GCCGGC	1 cut(s)	578
Ksp22I	TGATCA	1 cut(s)	189
Kzo9I	GATC	3 cut(s)	189, 357, 649
LguI	GCTCTTC	1 cut(s)	347
LmnI	GCTCC	4 cut(s)	89, 280, 439, 761
LpnPI	CCDG	8 cut(s)	208, 219, 374, 475, 590, 597, 638, 799
Lsp1109I	GCAGC	4 cut(s)	151, 173, 518, 703
LweI	GCATC	1 cut(s)	385
MaeI	CTAG	2 cut(s)	323, 693
MaeIII	GTNAC	4 cut(s)	3, 413, 587, 625
MalI	GATC	3 cut(s)	191, 359, 651
MboI	GATC	3 cut(s)	189, 357, 649
MboII	GAAGA	2 cut(s)	334, 626
MfeI	CAATTG	1 cut(s)	120
MflI	RGATCY	1 cut(s)	357
MhlI	GDGCHC	4 cut(s)	94, 277, 342, 436
MlsI	TGGCCA	1 cut(s)	263
MluCI	AATT	4 cut(s)	120, 309, 711, 724
MluNI	TGGCCA	1 cut(s)	263
Mox20I	TGGCCA	1 cut(s)	263
Mph1103I	ATGCAT	1 cut(s)	270
MroNI	GCCGGC	1 cut(s)	576
MroXI	GAANNNNTTC	1 cut(s)	704
MscI	TGGCCA	1 cut(s)	263
MseI	TTAA	1 cut(s)	39
Msp20I	TGGCCA	1 cut(s)	263
MspA1I	CMGCKG	2 cut(s)	14, 164
MspI	CCGG	4 cut(s)	195, 206, 577, 584
MspR9I	CCNGG	2 cut(s)	207, 585
MunI	CAATTG	1 cut(s)	120
Mva1269I	GAATGC	1 cut(s)	748
MwoI	GCNNNNNNNGC	2 cut(s)	440, 554
NaeI	GCCGGC	1 cut(s)	578
NciI	CCSGG	2 cut(s)	207, 585
NdeII	GATC	3 cut(s)	189, 357, 649
NgoMIV	GCCGGC	1 cut(s)	576
NlaIII	CATG	5 cut(s)	268, 272, 300, 421, 466
NlaIV	GGNNCC	3 cut(s)	79, 276, 359
NmuCI	GTSAC	2 cut(s)	3, 587
NsiI	ATGCAT	1 cut(s)	270
NspI	RCATGY	3 cut(s)	300, 421, 466
PaeR7I	CTCGAG	1 cut(s)	510
PciI	ACATGT	2 cut(s)	296, 417
PciSI	GCTCTTC	1 cut(s)	347
PctI	GAATGC	1 cut(s)	748
PdiI	GCCGGC	1 cut(s)	578
PdmI	GAANNNNTTC	1 cut(s)	704
PfeI	GAWTC	2 cut(s)	469, 656
PfoI	TCCNGGA	1 cut(s)	205
PkrI	GCNGC	4 cut(s)	163, 166, 508, 718
PscI	ACATGT	2 cut(s)	296, 417
Psp124BI	GAGCTC	2 cut(s)	94, 342
PspN4I	GGNNCC	3 cut(s)	79, 276, 359
PspPI	GGNCC	1 cut(s)	689
PspXI	VCTCGAGB	1 cut(s)	510
PstI	CTGCAG	1 cut(s)	802
PstNI	CAGNNNCTG	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	357
PvuII	CAGCTG	1 cut(s)	164
RigI	GGCCGGCC	1 cut(s)	580
RsaI	GTAC	1 cut(s)	202
RsaNI	GTAC	1 cut(s)	201
SacI	GAGCTC	2 cut(s)	94, 342
SapI	GCTCTTC	1 cut(s)	347
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	4 cut(s)	162, 165, 507, 717
Sau3AI	GATC	3 cut(s)	189, 357, 649
Sau96I	GGNCC	1 cut(s)	689
ScrFI	CCNGG	2 cut(s)	207, 585
SduI	GDGCHC	4 cut(s)	94, 277, 342, 436
SfaNI	GCATC	1 cut(s)	385
SfcI	CTRYAG	2 cut(s)	747, 798
Sfr274I	CTCGAG	1 cut(s)	510
SlaI	CTCGAG	1 cut(s)	510
SmlI	CTYRAG	2 cut(s)	510, 559
SmoI	CTYRAG	2 cut(s)	510, 559
Sse9I	AATT	4 cut(s)	120, 309, 711, 724
SsiI	CCGC	2 cut(s)	12, 719
SspMI	CTAG	2 cut(s)	323, 693
SstI	GAGCTC	2 cut(s)	94, 342
StyD4I	CCNGG	2 cut(s)	205, 583
StyI	CCWWGG	2 cut(s)	133, 178
TaaI	ACNGT	3 cut(s)	9, 763, 793
TaqI	TCGA	1 cut(s)	511
TasI	AATT	4 cut(s)	120, 309, 711, 724
TatI	WGTACW	1 cut(s)	200
TfiI	GAWTC	2 cut(s)	469, 656
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TscAI	CASTG	1 cut(s)	766
TseFI	GTSAC	2 cut(s)	3, 587
TseI	GCWGC	4 cut(s)	161, 164, 506, 716
Tsp45I	GTSAC	2 cut(s)	3, 587
TspDTI	ATGAA	2 cut(s)	334, 697
TspRI	CASTG	1 cut(s)	766
XapI	RAATTY	1 cut(s)	309
XceI	RCATGY	3 cut(s)	300, 421, 466
XhoI	CTCGAG	1 cut(s)	510
XmiI	GTMKAC	1 cut(s)	114
XmnI	GAANNNNTTC	1 cut(s)	704
XspI	CTAG	2 cut(s)	323, 693
Zsp2I	ATGCAT	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.