Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000250.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

25266 .. 25920

Gene Structure 655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atgctatgctacggtgatacttctgtgccaatgttgcctcagaacgtggtaagatcaatccctttttgtttgcggtttaaggaggctcgccgtctcggctacaaggacaagggagtccgtgtgaggcctgttgccaatggtactttgtaccgaccagggttctcagttaattcctacaacaaggattcaacctacaagtactttgaggttattcttgttcatgttgctcacacagttatcaagaatcaattggatcgtcaatcctgttcacaagcacagagagattcgtggtctcacttctgctgggaagaaatacaattaccacaagaatcgtccacctcgcagggcaacctggaacagaatcaacaccctgtccttcgtcgctacagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L15e

Protein Analysis

130

Amino Acids

15.13

Weight (kDa)

9.32

Isoelectric Point (pI)

55.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	113
AciI	CCGC	1 cut(s)	73
AclWI	GGATC	1 cut(s)	261
AfaI	GTAC	3 cut(s)	142, 149, 200
AgsI	TTSAA	1 cut(s)	189
AjnI	CCWGG	2 cut(s)	154, 351
Alw26I	GTCTC	2 cut(s)	98, 297
AlwI	GGATC	1 cut(s)	261
AoxI	GGCC	1 cut(s)	125
AsuHPI	GGTGA	1 cut(s)	26
BaeI	ACNNNNGTAYC	2 cut(s)	9, 42
BceAI	ACGGC	1 cut(s)	75
BciT130I	CCWGG	2 cut(s)	156, 353
BcoDI	GTCTC	2 cut(s)	98, 297
BfmI	CTRYAG	1 cut(s)	385
BglI	GCCNNNNNGGC	1 cut(s)	96
BmcAI	AGTACT	1 cut(s)	200
Bme1390I	CCNGG	2 cut(s)	156, 353
BmrFI	CCNGG	2 cut(s)	156, 353
BsaI	GGTCTC	1 cut(s)	297
BsaJI	CCNNGG	1 cut(s)	155
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
BseBI	CCWGG	2 cut(s)	156, 353
BseDI	CCNNGG	1 cut(s)	155
BseMII	CTCAG	2 cut(s)	53, 177
BseYI	CCCAGC	1 cut(s)	303
BshFI	GGCC	1 cut(s)	127
BsmAI	GTCTC	2 cut(s)	98, 297
BsmBI	CGTCTC	1 cut(s)	98
BsnI	GGCC	1 cut(s)	127
Bso31I	GGTCTC	1 cut(s)	297
Bsp143I	GATC	2 cut(s)	53, 253
BspACI	CCGC	1 cut(s)	73
BspANI	GGCC	1 cut(s)	127
BspCNI	CTCAG	2 cut(s)	52, 176
BspPI	GGATC	1 cut(s)	261
BspTNI	GGTCTC	1 cut(s)	297
BssECI	CCNNGG	1 cut(s)	155
BssMI	GATC	2 cut(s)	53, 253
Bst2UI	CCWGG	2 cut(s)	156, 353
Bst4CI	ACNGT	3 cut(s)	14, 235, 389
BstC8I	GCNNGC	1 cut(s)	88
BstDEI	CTNAG	2 cut(s)	39, 163
BstKTI	GATC	2 cut(s)	56, 256
BstMAI	GTCTC	2 cut(s)	98, 297
BstMBI	GATC	2 cut(s)	53, 253
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 96
BstNI	CCWGG	2 cut(s)	156, 353
BstSCI	CCNGG	2 cut(s)	154, 351
BstSFI	CTRYAG	1 cut(s)	385
BsuRI	GGCC	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	88
Csp6I	GTAC	3 cut(s)	141, 148, 199
CviAII	CATG	1 cut(s)	221
CviJI	RGCY	3 cut(s)	86, 99, 127
CviKI_1	RGCY	3 cut(s)	86, 99, 127
CviQI	GTAC	3 cut(s)	141, 148, 199
DdeI	CTNAG	2 cut(s)	39, 163
DpnI	GATC	2 cut(s)	55, 255
DpnII	GATC	2 cut(s)	53, 253
DrdI	GACNNNNNNGTC	1 cut(s)	113
DseDI	GACNNNNNNGTC	1 cut(s)	113
Eco147I	AGGCCT	1 cut(s)	127
Eco31I	GGTCTC	1 cut(s)	297
EcoRII	CCWGG	2 cut(s)	154, 351
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	1 cut(s)	224
FaiI	YATR	2 cut(s)	7, 222
FatI	CATG	1 cut(s)	220
GsaI	CCCAGC	1 cut(s)	307
HaeIII	GGCC	1 cut(s)	127
Hin1II	CATG	1 cut(s)	224
HinfI	GANTC	6 cut(s)	114, 185, 244, 284, 329, 361
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	2 cut(s)	269, 336
Hpy188I	TCNGA	1 cut(s)	42
Hpy188III	TCNNGA	1 cut(s)	241
Hpy8I	GTNNAC	2 cut(s)	269, 336
Hpy99I	CGWCG	1 cut(s)	384
HpyAV	CCTTC	1 cut(s)	386
HpyCH4III	ACNGT	3 cut(s)	14, 235, 389
HpyCH4IV	ACGT	1 cut(s)	45
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 96
HpyF3I	CTNAG	2 cut(s)	39, 163
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	1 cut(s)	224
Kzo9I	GATC	2 cut(s)	53, 253
LpnPI	CCDG	9 cut(s)	141, 141, 168, 277, 289, 329, 338, 365, 384
MaeII	ACGT	1 cut(s)	45
MalI	GATC	2 cut(s)	55, 255
MboI	GATC	2 cut(s)	53, 253
MboII	GAAGA	1 cut(s)	320
MfeI	CAATTG	1 cut(s)	248
MluCI	AATT	3 cut(s)	169, 248, 317
MlyI	GAGTC	1 cut(s)	123
MnlI	CCTC	5 cut(s)	48, 76, 117, 199, 349
MseI	TTAA	2 cut(s)	78, 168
MspR9I	CCNGG	2 cut(s)	156, 353
MunI	CAATTG	1 cut(s)	248
MvaI	CCWGG	2 cut(s)	156, 353
MwoI	GCNNNNNNNGC	2 cut(s)	34, 96
NdeII	GATC	2 cut(s)	53, 253
NlaIII	CATG	1 cut(s)	224
NmeAIII	GCCGAG	1 cut(s)	75
PceI	AGGCCT	1 cut(s)	127
PfeI	GAWTC	5 cut(s)	185, 244, 284, 329, 361
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
Psp6I	CCWGG	2 cut(s)	154, 351
PspFI	CCCAGC	1 cut(s)	303
PspGI	CCWGG	2 cut(s)	154, 351
RsaI	GTAC	3 cut(s)	142, 149, 200
RsaNI	GTAC	3 cut(s)	141, 148, 199
SaqAI	TTAA	2 cut(s)	78, 168
Sau3AI	GATC	2 cut(s)	53, 253
ScaI	AGTACT	1 cut(s)	200
SchI	GAGTC	1 cut(s)	123
ScrFI	CCNGG	2 cut(s)	156, 353
SetI	ASST	5 cut(s)	48, 194, 210, 341, 354
SfcI	CTRYAG	1 cut(s)	385
Sse9I	AATT	3 cut(s)	169, 248, 317
SseBI	AGGCCT	1 cut(s)	127
SsiI	CCGC	1 cut(s)	73
StuI	AGGCCT	1 cut(s)	127
StyD4I	CCNGG	2 cut(s)	154, 351
TaaI	ACNGT	3 cut(s)	14, 235, 389
TaiI	ACGT	1 cut(s)	48
TasI	AATT	3 cut(s)	169, 248, 317
TatI	WGTACW	1 cut(s)	198
TfiI	GAWTC	5 cut(s)	185, 244, 284, 329, 361
Tru1I	TTAA	2 cut(s)	78, 168
Tru9I	TTAA	2 cut(s)	78, 168
TspDTI	ATGAA	1 cut(s)	209
TspGWI	ACGGA	1 cut(s)	107
ZrmI	AGTACT	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.