Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000255.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

185784 .. 186209

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atgaaattcccaacacctaacggcactgggtcggtcaggggaagccaatcaattgcatgggagtgttactcaacaacagtgtcgaggtcaagaggccgccatgaaattttaacagtagctaatacaccacagttgacggacaaaattgatgaccccagagatgatgaggaaaaatattacagaaaggagcccgtcaacccagaaaaatcgctccgcattgtaagcatctccaacgagcacccagagaggactgtgcgtatcggagcccagctttcccctgagatagctattgaactcacccagttttttaaagagaataccacattattggcatggtcgtatgctgacatgtcagggatctctcccgacataattcaacataagctcagcatcaagccatccttttacgccgtcaaacagaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

141

Amino Acids

16.01

Weight (kDa)

7.85

Isoelectric Point (pI)

49.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	97, 214
AclWI	GGATC	1 cut(s)	365
AcsI	RAATTY	2 cut(s)	5, 105
AflIII	ACRYGT	1 cut(s)	348
AgsI	TTSAA	2 cut(s)	293, 377
AluBI	AGCT	4 cut(s)	119, 271, 287, 385
AluI	AGCT	4 cut(s)	119, 271, 287, 385
Alw21I	GWGCWC	1 cut(s)	240
AlwI	GGATC	1 cut(s)	365
AoxI	GGCC	1 cut(s)	94
ApoI	RAATTY	2 cut(s)	5, 105
AsuHPI	GGTGA	1 cut(s)	289
BanII	GRGCYC	2 cut(s)	192, 268
Bbv12I	GWGCWC	1 cut(s)	240
BccI	CCATC	1 cut(s)	406
BceAI	ACGGC	2 cut(s)	37, 395
BisI	GCNGC	1 cut(s)	97
BlpI	GCTNAGC	1 cut(s)	386
BlsI	GCNGC	1 cut(s)	98
BmiI	GGNNCC	2 cut(s)	189, 265
BmrI	ACTGGG	2 cut(s)	36, 295
BmsI	GCATC	2 cut(s)	234, 399
BmuI	ACTGGG	2 cut(s)	36, 295
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
Bpu1102I	GCTNAGC	1 cut(s)	386
Bse1I	ACTGG	2 cut(s)	31, 301
BseGI	GGATG	1 cut(s)	398
BseMII	CTCAG	2 cut(s)	270, 400
BseNI	ACTGG	2 cut(s)	31, 301
BseYI	CCCAGC	1 cut(s)	267
BshFI	GGCC	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	240
BsnI	GGCC	1 cut(s)	96
Bsp1286I	GDGCHC	3 cut(s)	192, 240, 268
Bsp143I	GATC	1 cut(s)	357
Bsp1720I	GCTNAGC	1 cut(s)	386
BspACI	CCGC	2 cut(s)	97, 214
BspANI	GGCC	1 cut(s)	96
BspCNI	CTCAG	2 cut(s)	271, 399
BspLI	GGNNCC	2 cut(s)	189, 265
BspPI	GGATC	1 cut(s)	365
BsrI	ACTGG	2 cut(s)	31, 301
BssMI	GATC	1 cut(s)	357
Bst4CI	ACNGT	4 cut(s)	79, 115, 132, 253
BstDEI	CTNAG	2 cut(s)	279, 386
BstF5I	GGATG	1 cut(s)	398
BstKTI	GATC	1 cut(s)	360
BstMBI	GATC	1 cut(s)	357
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstNSI	RCATGY	1 cut(s)	352
BstX2I	RGATCY	1 cut(s)	357
BstXI	CCANNNNNNTGG	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	357
BsuRI	GGCC	1 cut(s)	96
BtsCI	GGATG	1 cut(s)	398
BtsIMutI	CAGTG	2 cut(s)	24, 84
CviAII	CATG	4 cut(s)	57, 101, 333, 349
CviJI	RGCY	9 cut(s)	45, 96, 119, 190, 266, 271, 287, 385, 397
CviKI_1	RGCY	9 cut(s)	45, 96, 119, 190, 266, 271, 287, 385, 397
DdeI	CTNAG	2 cut(s)	279, 386
DpnI	GATC	1 cut(s)	359
DpnII	GATC	1 cut(s)	357
DraI	TTTAAA	1 cut(s)	310
Eco24I	GRGCYC	2 cut(s)	192, 268
EcoT38I	GRGCYC	2 cut(s)	192, 268
FaeI	CATG	4 cut(s)	60, 104, 336, 352
FaiI	YATR	7 cut(s)	58, 102, 334, 342, 350, 371, 381
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
FatI	CATG	4 cut(s)	56, 100, 332, 348
Fnu4HI	GCNGC	1 cut(s)	97
FokI	GGATG	1 cut(s)	385
FriOI	GRGCYC	2 cut(s)	192, 268
Fsp4HI	GCNGC	1 cut(s)	97
GluI	GCNGC	1 cut(s)	97
GsaI	CCCAGC	1 cut(s)	271
HaeIII	GGCC	1 cut(s)	96
Hin1II	CATG	4 cut(s)	60, 104, 336, 352
HincII	GTYRAC	2 cut(s)	135, 196
HindII	GTYRAC	2 cut(s)	135, 196
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	2 cut(s)	135, 196
Hpy188I	TCNGA	1 cut(s)	263
Hpy188III	TCNNGA	2 cut(s)	90, 365
Hpy8I	GTNNAC	2 cut(s)	135, 196
HpyCH4III	ACNGT	4 cut(s)	79, 115, 132, 253
HpyCH4V	TGCA	1 cut(s)	56
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
HpyF3I	CTNAG	2 cut(s)	279, 386
Hsp92II	CATG	4 cut(s)	60, 104, 336, 352
Kzo9I	GATC	1 cut(s)	357
LmnI	GCTCC	3 cut(s)	187, 216, 263
LpnPI	CCDG	9 cut(s)	12, 22, 169, 213, 255, 281, 291, 314, 339
LweI	GCATC	2 cut(s)	234, 399
MaeIII	GTNAC	1 cut(s)	65
MalI	GATC	1 cut(s)	359
MboI	GATC	1 cut(s)	357
MfeI	CAATTG	1 cut(s)	51
MflI	RGATCY	1 cut(s)	357
MhlI	GDGCHC	3 cut(s)	192, 240, 268
MluCI	AATT	5 cut(s)	5, 51, 105, 144, 372
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	4 cut(s)	78, 86, 160, 240
MseI	TTAA	2 cut(s)	110, 309
MslI	CAYNNNNRTG	1 cut(s)	61
MunI	CAATTG	1 cut(s)	51
MwoI	GCNNNNNNNGC	1 cut(s)	222
NdeII	GATC	1 cut(s)	357
NlaIII	CATG	4 cut(s)	60, 104, 336, 352
NlaIV	GGNNCC	2 cut(s)	189, 265
NspI	RCATGY	1 cut(s)	352
PciI	ACATGT	1 cut(s)	348
PkrI	GCNGC	1 cut(s)	98
PscI	ACATGT	1 cut(s)	348
PspFI	CCCAGC	1 cut(s)	267
PspN4I	GGNNCC	2 cut(s)	189, 265
PsuI	RGATCY	1 cut(s)	357
RseI	CAYNNNNRTG	1 cut(s)	61
SaqAI	TTAA	2 cut(s)	110, 309
SatI	GCNGC	1 cut(s)	97
Sau3AI	GATC	1 cut(s)	357
SduI	GDGCHC	3 cut(s)	192, 240, 268
SetI	ASST	6 cut(s)	19, 89, 121, 273, 289, 387
SfaNI	GCATC	2 cut(s)	234, 399
SmiMI	CAYNNNNRTG	1 cut(s)	61
Sse9I	AATT	5 cut(s)	5, 51, 105, 144, 372
SsiI	CCGC	2 cut(s)	97, 214
SspI	AATATT	1 cut(s)	176
TaaI	ACNGT	4 cut(s)	79, 115, 132, 253
TaqI	TCGA	1 cut(s)	83
TaqII	GACCGA	1 cut(s)	22
TasI	AATT	5 cut(s)	5, 51, 105, 144, 372
TauI	GCSGC	1 cut(s)	99
Tru1I	TTAA	2 cut(s)	110, 309
Tru9I	TTAA	2 cut(s)	110, 309
TscAI	CASTG	2 cut(s)	31, 84
TspDTI	ATGAA	2 cut(s)	17, 117
TspGWI	ACGGA	1 cut(s)	152
TspRI	CASTG	2 cut(s)	31, 84
XapI	RAATTY	2 cut(s)	5, 105
XceI	RCATGY	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.