Rmu_ssc0000262.1_g000012

arbuscular mycorrhizal association

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000262.1
N/A
Physical Location & Seq
Reverse (-)
28158 .. 32508
4351 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 483 bp
atggaaattgatcaatctgacaatggtcatatgcatatacaacagtatttctttcatgcaataaaagtcccttctcatggaactgcagatattagagaacgtattattggaaatttgaaagatgatcaaaagaggggagaacgtttagagcgatatggatctgtgacatcagccacttcaggagataaggaggatgccacaaaaaagcggagggtggagagatcacgcaaaatggcagaggcaaaggaaaggaactcaactccagtaattccatcagatatacaatctgttttgaagcggtgtgaaaatcttgaaaaggaagtccggtccctcaaacttaacttgtccttcatgaataggaaggattcagagcagacaaagcagatagaggagcttcagcagcaaaacgaagaattaacagatgaaaaggagcgccttttagaagagattgaaaggatccttgcagaaaatggcaagatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0036377 GO:0044403 GO:0044419 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

18.66

Weight (kDa)

6.15

Isoelectric Point (pI)

61.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 208, 298
AclI AACGTT 1 cut(s) 142
AclWI GGATC 3 cut(s) 166, 451, 464
AcsI RAATTY 1 cut(s) 112
AcuI CTGAAG 2 cut(s) 162, 380
AfiI CCNNNNNNNGG 1 cut(s) 77
AgsI TTSAA 4 cut(s) 118, 295, 314, 452
AjuI GAANNNNNNNTTGG 2 cut(s) 90, 122
AluBI AGCT 1 cut(s) 394
AluI AGCT 1 cut(s) 394
AlwI GGATC 3 cut(s) 166, 451, 464
ApeKI GCWGC 1 cut(s) 400
ApoI RAATTY 1 cut(s) 112
AspLEI GCGC 1 cut(s) 435
AspS9I GGNCC 1 cut(s) 327
AvaII GGWCC 1 cut(s) 327
BamHI GGATCC 1 cut(s) 456
BbvI GCAGC 1 cut(s) 412
BccI CCATC 1 cut(s) 280
BclI TGATCA 2 cut(s) 10, 124
BfmI CTRYAG 1 cut(s) 84
BfoI RGCGCY 1 cut(s) 436
BisI GCNGC 1 cut(s) 401
BlsI GCNGC 1 cut(s) 402
Bme18I GGWCC 1 cut(s) 327
BmgT120I GGNCC 1 cut(s) 327
BmiI GGNNCC 2 cut(s) 329, 458
BmsI GCATC 1 cut(s) 184
BoxI GACNNNNGTC 1 cut(s) 24
BpmI CTGGAG 1 cut(s) 246
BsaBI GATNNNNATC 1 cut(s) 157
BsaWI WCCGGW 1 cut(s) 324
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 263
Bse8I GATNNNNATC 1 cut(s) 157
BseGI GGATG 1 cut(s) 199
BseJI GATNNNNATC 1 cut(s) 157
BseLI CCNNNNNNNGG 1 cut(s) 77
BseNI ACTGG 1 cut(s) 263
BseRI GAGGAG 1 cut(s) 404
BseXI GCAGC 1 cut(s) 412
BsiSI CCGG 1 cut(s) 325
BslFI GGGAC 2 cut(s) 53, 313
BslI CCNNNNNNNGG 1 cut(s) 77
BsmFI GGGAC 2 cut(s) 53, 313
Bsp143I GATC 5 cut(s) 10, 124, 158, 221, 456
BspACI CCGC 2 cut(s) 208, 298
BspHI TCATGA 1 cut(s) 351
BspLI GGNNCC 2 cut(s) 329, 458
BspMAI CTGCAG 1 cut(s) 88
BspPI GGATC 3 cut(s) 166, 451, 464
BsrI ACTGG 1 cut(s) 263
BssMI GATC 5 cut(s) 10, 124, 158, 221, 456
Bst4CI ACNGT 1 cut(s) 45
Bst6I CTCTTC 1 cut(s) 438
BstF5I GGATG 1 cut(s) 199
BstH2I RGCGCY 1 cut(s) 436
BstHHI GCGC 1 cut(s) 435
BstKTI GATC 5 cut(s) 13, 127, 161, 224, 459
BstMBI GATC 5 cut(s) 10, 124, 158, 221, 456
BstMWI GCNNNNNNNGC 2 cut(s) 379, 400
BstPAI GACNNNNGTC 1 cut(s) 24
BstSFI CTRYAG 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 412
BstX2I RGATCY 2 cut(s) 158, 456
BstYI RGATCY 2 cut(s) 158, 456
BtsCI GGATG 1 cut(s) 199
CciI TCATGA 1 cut(s) 351
CfoI GCGC 1 cut(s) 435
Cfr13I GGNCC 1 cut(s) 327
CviAII CATG 3 cut(s) 56, 77, 352
CviJI RGCY 2 cut(s) 173, 394
CviKI_1 RGCY 2 cut(s) 173, 394
DpnI GATC 5 cut(s) 12, 126, 160, 223, 458
DpnII GATC 5 cut(s) 10, 124, 158, 221, 456
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
Eco47I GGWCC 1 cut(s) 327
Eco57I CTGAAG 2 cut(s) 162, 380
EcoT22I ATGCAT 1 cut(s) 36
FaeI CATG 3 cut(s) 59, 80, 355
FaiI YATR 9 cut(s) 30, 32, 36, 38, 57, 78, 156, 281, 353
FaqI GGGAC 2 cut(s) 53, 313
FatI CATG 3 cut(s) 55, 76, 351
FauNDI CATATG 1 cut(s) 30
FbaI TGATCA 2 cut(s) 10, 124
Fnu4HI GCNGC 1 cut(s) 401
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 1 cut(s) 401
GlaI GCGC 1 cut(s) 434
GluI GCNGC 1 cut(s) 401
GsuI CTGGAG 1 cut(s) 246
HaeII RGCGCY 1 cut(s) 436
HapII CCGG 1 cut(s) 325
HhaI GCGC 1 cut(s) 435
Hin1II CATG 3 cut(s) 59, 80, 355
Hin6I GCGC 1 cut(s) 433
HinP1I GCGC 1 cut(s) 433
HinfI GANTC 1 cut(s) 365
HpaII CCGG 1 cut(s) 325
Hpy188I TCNGA 3 cut(s) 19, 277, 370
Hpy188III TCNNGA 3 cut(s) 180, 311, 352
HpyAV CCTTC 3 cut(s) 81, 355, 358
HpyCH4III ACNGT 1 cut(s) 45
HpyCH4IV ACGT 2 cut(s) 100, 142
HpyCH4V TGCA 4 cut(s) 34, 59, 86, 464
HpyF10VI GCNNNNNNNGC 2 cut(s) 379, 400
HpySE526I ACGT 2 cut(s) 100, 142
Hsp92II CATG 3 cut(s) 59, 80, 355
HspAI GCGC 1 cut(s) 433
Ksp22I TGATCA 2 cut(s) 10, 124
Kzo9I GATC 5 cut(s) 10, 124, 158, 221, 456
LmnI GCTCC 2 cut(s) 391, 430
LpnPI CCDG 3 cut(s) 165, 276, 338
Lsp1109I GCAGC 1 cut(s) 412
LweI GCATC 1 cut(s) 184
MaeII ACGT 2 cut(s) 100, 142
MaeIII GTNAC 1 cut(s) 163
MalI GATC 5 cut(s) 12, 126, 160, 223, 458
MboI GATC 5 cut(s) 10, 124, 158, 221, 456
MboII GAAGA 2 cut(s) 422, 455
MflI RGATCY 2 cut(s) 158, 456
MluCI AATT 4 cut(s) 6, 112, 267, 413
MnlI CCTC 6 cut(s) 126, 184, 204, 232, 341, 382
Mph1103I ATGCAT 1 cut(s) 36
MseI TTAA 2 cut(s) 339, 416
MspI CCGG 1 cut(s) 325
MwoI GCNNNNNNNGC 2 cut(s) 379, 400
NdeI CATATG 1 cut(s) 30
NdeII GATC 5 cut(s) 10, 124, 158, 221, 456
NlaIII CATG 3 cut(s) 59, 80, 355
NlaIV GGNNCC 2 cut(s) 329, 458
NmuCI GTSAC 1 cut(s) 163
NsiI ATGCAT 1 cut(s) 36
PagI TCATGA 1 cut(s) 351
PcsI WCGNNNNNNNCGW 1 cut(s) 148
PfeI GAWTC 1 cut(s) 365
PkrI GCNGC 1 cut(s) 402
PshAI GACNNNNGTC 1 cut(s) 24
Psp1406I AACGTT 1 cut(s) 142
PspN4I GGNNCC 2 cut(s) 329, 458
PspPI GGNCC 1 cut(s) 327
PstI CTGCAG 1 cut(s) 88
PsuI RGATCY 2 cut(s) 158, 456
SaqAI TTAA 2 cut(s) 339, 416
SatI GCNGC 1 cut(s) 401
Sau3AI GATC 5 cut(s) 10, 124, 158, 221, 456
Sau96I GGNCC 1 cut(s) 327
SetI ASST 3 cut(s) 103, 145, 396
SfaNI GCATC 1 cut(s) 184
SfcI CTRYAG 1 cut(s) 84
SinI GGWCC 1 cut(s) 327
Sse9I AATT 4 cut(s) 6, 112, 267, 413
SsiI CCGC 2 cut(s) 208, 298
TaaI ACNGT 1 cut(s) 45
TaiI ACGT 2 cut(s) 103, 145
TasI AATT 4 cut(s) 6, 112, 267, 413
TfiI GAWTC 1 cut(s) 365
Tru1I TTAA 2 cut(s) 339, 416
Tru9I TTAA 2 cut(s) 339, 416
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 1 cut(s) 400
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 4 cut(s) 44, 340, 368, 438
VpaK11BI GGWCC 1 cut(s) 327
XapI RAATTY 1 cut(s) 112
Zsp2I ATGCAT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.