Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000263.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

83779 .. 84264

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atgatgccactctgtcctctctcctctctctccactgccagcaacccccctctctctcctccccgatctccacctccggtttctctctctgcgatcgccgcgctggagatgcagtccaagcttgaagacgacgaagaagctacggtcggagctccagccactccgacgttctcgtcgccgttcgatagatctcgaggacgagtagtacttgtagagttgcagagcttgcacttcaattcgctgaaggtcaacaacgagtctgtggtctacatgtcgcttcccattatgttcgccattgacgacgagaggaaggagagaatcaagtcattgacgaatatgggattggtacgttggacaattgagatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0003674 GO:0003824 GO:0004020 GO:0004779 GO:0004781 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006790 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009970 GO:0009987 GO:0009991 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0070566 GO:0071496

KEGG Pathways

Metabolic & Signaling

ko00230 ko00261 ko00450 ko00920 ko01100 ko01120 ko01130 map00230 map00261 map00450 map00920 map01100 map01120 map01130

Pfam Domains

Protein Families

ATP-sulfurylase PUA_2

Protein Analysis

122

Amino Acids

13.4

Weight (kDa)

5.09

Isoelectric Point (pI)

75.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	172
AccI	GTMKAC	1 cut(s)	267
AccII	CGCG	1 cut(s)	101
AciI	CCGC	1 cut(s)	99
AcuI	CTGAAG	1 cut(s)	263
AfaI	GTAC	2 cut(s)	207, 348
AflIII	ACRYGT	1 cut(s)	270
AgsI	TTSAA	2 cut(s)	125, 235
AjuI	GAANNNNNNNTTGG	2 cut(s)	326, 358
AluBI	AGCT	4 cut(s)	121, 140, 152, 225
AluI	AGCT	4 cut(s)	121, 140, 152, 225
Alw21I	GWGCWC	1 cut(s)	154
Ama87I	CYCGRG	1 cut(s)	192
AsiSI	GCGATCGC	1 cut(s)	96
AspLEI	GCGC	1 cut(s)	103
AvaI	CYCGRG	1 cut(s)	192
BanII	GRGCYC	1 cut(s)	154
BbsI	GAAGAC	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	154
BceAI	ACGGC	1 cut(s)	163
BglII	AGATCT	1 cut(s)	188
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
BmcAI	AGTACT	1 cut(s)	207
BmeT110I	CYCGRG	1 cut(s)	192
BmsI	GCATC	1 cut(s)	99
BpiI	GAAGAC	1 cut(s)	132
BpmI	CTGGAG	2 cut(s)	125, 138
BsaWI	WCCGGW	1 cut(s)	76
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
BseRI	GAGGAG	2 cut(s)	13, 48
Bsh1236I	CGCG	1 cut(s)	101
Bsh1285I	CGRYCG	2 cut(s)	96, 147
BsiEI	CGRYCG	2 cut(s)	96, 147
BsiHKAI	GWGCWC	1 cut(s)	154
BsiHKCI	CYCGRG	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	77
BsoBI	CYCGRG	1 cut(s)	192
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	3 cut(s)	65, 93, 188
BspACI	CCGC	1 cut(s)	99
BspFNI	CGCG	1 cut(s)	101
BssMI	GATC	3 cut(s)	65, 93, 188
Bst4CI	ACNGT	1 cut(s)	145
BstAPI	GCANNNNNTGC	1 cut(s)	226
BstC8I	GCNNGC	2 cut(s)	40, 227
BstFNI	CGCG	1 cut(s)	101
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	3 cut(s)	68, 96, 191
BstMBI	GATC	3 cut(s)	65, 93, 188
BstMCI	CGRYCG	2 cut(s)	96, 147
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 109, 118, 226
BstNSI	RCATGY	1 cut(s)	274
BstUI	CGCG	1 cut(s)	101
BstV2I	GAAGAC	1 cut(s)	132
BstX2I	RGATCY	1 cut(s)	188
BstYI	RGATCY	1 cut(s)	188
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	2 cut(s)	40, 227
CfoI	GCGC	1 cut(s)	103
Csp6I	GTAC	2 cut(s)	206, 347
CviAII	CATG	1 cut(s)	271
CviJI	RGCY	5 cut(s)	121, 140, 152, 158, 225
CviKI_1	RGCY	5 cut(s)	121, 140, 152, 158, 225
CviQI	GTAC	2 cut(s)	206, 347
DpnI	GATC	3 cut(s)	67, 95, 190
DpnII	GATC	3 cut(s)	65, 93, 188
DrdI	GACNNNNNNGTC	1 cut(s)	172
DseDI	GACNNNNNNGTC	1 cut(s)	172
Ecl136II	GAGCTC	1 cut(s)	152
Eco24I	GRGCYC	1 cut(s)	154
Eco53kI	GAGCTC	1 cut(s)	152
Eco57I	CTGAAG	1 cut(s)	263
Eco88I	CYCGRG	1 cut(s)	192
EcoICRI	GAGCTC	1 cut(s)	152
EcoT38I	GRGCYC	1 cut(s)	154
FaeI	CATG	1 cut(s)	274
FaiI	YATR	3 cut(s)	272, 287, 338
FatI	CATG	1 cut(s)	270
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	1 cut(s)	99
FriOI	GRGCYC	1 cut(s)	154
Fsp4HI	GCNGC	1 cut(s)	99
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	1 cut(s)	99
GsuI	CTGGAG	2 cut(s)	125, 138
HapII	CCGG	1 cut(s)	77
HhaI	GCGC	1 cut(s)	103
Hin1II	CATG	1 cut(s)	274
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	2 cut(s)	257, 318
HpaII	CCGG	1 cut(s)	77
Hpy166II	GTNNAC	2 cut(s)	250, 268
Hpy188I	TCNGA	2 cut(s)	149, 165
Hpy188III	TCNNGA	1 cut(s)	192
Hpy8I	GTNNAC	2 cut(s)	250, 268
Hpy99I	CGWCG	4 cut(s)	134, 169, 178, 305
HpyAV	CCTTC	2 cut(s)	238, 304
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	2 cut(s)	167, 349
HpyCH4V	TGCA	3 cut(s)	112, 220, 229
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 109, 118, 226
HpySE526I	ACGT	2 cut(s)	167, 349
Hsp92II	CATG	1 cut(s)	274
HspAI	GCGC	1 cut(s)	101
Kzo9I	GATC	3 cut(s)	65, 93, 188
LmnI	GCTCC	2 cut(s)	149, 157
LpnPI	CCDG	4 cut(s)	52, 89, 90, 168
LweI	GCATC	1 cut(s)	99
MaeII	ACGT	2 cut(s)	167, 349
MalI	GATC	3 cut(s)	67, 95, 190
MboI	GATC	3 cut(s)	65, 93, 188
MboII	GAAGA	2 cut(s)	137, 146
MfeI	CAATTG	1 cut(s)	357
MflI	RGATCY	1 cut(s)	188
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	2 cut(s)	235, 357
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	3 cut(s)	127, 188, 332
MnlI	CCTC	7 cut(s)	27, 34, 60, 69, 84, 188, 300
MspI	CCGG	1 cut(s)	77
MunI	CAATTG	1 cut(s)	357
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	4 cut(s)	98, 109, 118, 226
NdeII	GATC	3 cut(s)	65, 93, 188
NlaIII	CATG	1 cut(s)	274
NspI	RCATGY	1 cut(s)	274
PaeR7I	CTCGAG	1 cut(s)	192
PciI	ACATGT	1 cut(s)	270
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PfeI	GAWTC	1 cut(s)	318
PkrI	GCNGC	1 cut(s)	100
Ple19I	CGATCG	1 cut(s)	96
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
PscI	ACATGT	1 cut(s)	270
Psp124BI	GAGCTC	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	188
PvuI	CGATCG	1 cut(s)	96
RgaI	GCGATCGC	1 cut(s)	96
RsaI	GTAC	2 cut(s)	207, 348
RsaNI	GTAC	2 cut(s)	206, 347
SacI	GAGCTC	1 cut(s)	154
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	3 cut(s)	65, 93, 188
ScaI	AGTACT	1 cut(s)	207
SchI	GAGTC	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	8 cut(s)	76, 123, 142, 154, 170, 227, 249, 352
SfaAI	GCGATCGC	1 cut(s)	96
SfaNI	GCATC	1 cut(s)	99
Sfr274I	CTCGAG	1 cut(s)	192
SgfI	GCGATCGC	1 cut(s)	96
SlaI	CTCGAG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	192
SmoI	CTYRAG	1 cut(s)	192
Sse9I	AATT	2 cut(s)	235, 357
SsiI	CCGC	1 cut(s)	99
SstI	GAGCTC	1 cut(s)	154
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	2 cut(s)	170, 352
TaqI	TCGA	2 cut(s)	183, 193
TasI	AATT	2 cut(s)	235, 357
TatI	WGTACW	1 cut(s)	205
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	1 cut(s)	318
TscAI	CASTG	1 cut(s)	40
TspRI	CASTG	1 cut(s)	40
XceI	RCATGY	1 cut(s)	274
XhoI	CTCGAG	1 cut(s)	192
XmiI	GTMKAC	1 cut(s)	267
ZrmI	AGTACT	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.