Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000269.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

7466 .. 10083

Gene Structure 2618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atgtctcgagtcagacagatccctgccgccgttctgcaaatcgtcctgtccaaatcagacggcatcaaacagtgtagagccatgggtcttctacgtcacctccgcgaagctgtggtgagcatatgtgctttggactatatcatcagtggaagttgcgatgaggacgtgattcgcatctgctgtgctcaaactggaaagcgacttagggatgtttatttggaggatgaatcaggaaattcaatattcgtgcagtccttaaggggcgatcctttcaggcattttaatatgagtatattagccactgctacacgcccaagcttcaagtgggagattatcaaggtcaacttacttgcatcgagtgactctgcagaagaacattgttatggccagtgtttgcagccttcttgctgtctgggaggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0000715 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006464 GO:0006508 GO:0006513 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010390 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0016579 GO:0019538 GO:0022607 GO:0030054 GO:0031334 GO:0031461 GO:0031465 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0033522 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0034644 GO:0035518 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043412 GO:0043687 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0051865 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070646 GO:0070647 GO:0070911 GO:0070914 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0080008 GO:0090304 GO:0090305 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

140

Amino Acids

15.49

Weight (kDa)

7.53

Isoelectric Point (pI)

58.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	105
AciI	CCGC	2 cut(s)	27, 103
AclWI	GGATC	2 cut(s)	13, 260
AcoI	YGGCCR	1 cut(s)	385
AcsI	RAATTY	1 cut(s)	235
AflII	CTTAAG	1 cut(s)	256
AgsI	TTSAA	2 cut(s)	240, 322
AjiI	CACGTC	1 cut(s)	166
AluBI	AGCT	2 cut(s)	110, 318
AluI	AGCT	2 cut(s)	110, 318
Alw21I	GWGCWC	1 cut(s)	187
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	2 cut(s)	13, 260
Ama87I	CYCGRG	1 cut(s)	6
AoxI	GGCC	1 cut(s)	385
ApeKI	GCWGC	1 cut(s)	397
ApoI	RAATTY	1 cut(s)	235
AsuHPI	GGTGA	2 cut(s)	89, 127
AvaI	CYCGRG	1 cut(s)	6
BalI	TGGCCA	1 cut(s)	387
BbsI	GAAGAC	1 cut(s)	80
Bbv12I	GWGCWC	1 cut(s)	187
BbvI	GCAGC	1 cut(s)	409
BceAI	ACGGC	2 cut(s)	14, 76
BcoDI	GTCTC	1 cut(s)	9
BfmI	CTRYAG	1 cut(s)	366
BfrI	CTTAAG	1 cut(s)	256
BisI	GCNGC	2 cut(s)	27, 398
BlsI	GCNGC	2 cut(s)	28, 399
BmeT110I	CYCGRG	1 cut(s)	6
BmgBI	CACGTC	1 cut(s)	166
BmsI	GCATC	3 cut(s)	72, 183, 362
BpiI	GAAGAC	1 cut(s)	80
BsaBI	GATNNNNATC	1 cut(s)	173
BsaJI	CCNNGG	1 cut(s)	81
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bse1I	ACTGG	2 cut(s)	196, 388
Bse8I	GATNNNNATC	1 cut(s)	173
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	2 cut(s)	214, 229
BseJI	GATNNNNATC	1 cut(s)	173
BseNI	ACTGG	2 cut(s)	196, 388
BseXI	GCAGC	1 cut(s)	409
BsgI	GTGCAG	1 cut(s)	269
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	1 cut(s)	387
BsiHKAI	GWGCWC	1 cut(s)	187
BsiHKCI	CYCGRG	1 cut(s)	6
BsmAI	GTCTC	1 cut(s)	9
BsnI	GGCC	1 cut(s)	387
BsoBI	CYCGRG	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp143I	GATC	2 cut(s)	18, 265
Bsp19I	CCATGG	1 cut(s)	81
BspACI	CCGC	2 cut(s)	27, 103
BspANI	GGCC	1 cut(s)	387
BspFNI	CGCG	1 cut(s)	105
BspMAI	CTGCAG	1 cut(s)	370
BspPI	GGATC	2 cut(s)	13, 260
BspTI	CTTAAG	1 cut(s)	256
BsrI	ACTGG	2 cut(s)	196, 388
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	2 cut(s)	18, 265
BssT1I	CCWWGG	1 cut(s)	81
Bst4CI	ACNGT	1 cut(s)	72
BstAFI	CTTAAG	1 cut(s)	256
BstDEI	CTNAG	1 cut(s)	203
BstDSI	CCRYGG	1 cut(s)	81
BstF5I	GGATG	2 cut(s)	214, 229
BstFNI	CGCG	1 cut(s)	105
BstKTI	GATC	2 cut(s)	21, 268
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	18, 265
BstSFI	CTRYAG	1 cut(s)	366
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	409
BstV2I	GAAGAC	1 cut(s)	80
BstX2I	RGATCY	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	18
BsuRI	GGCC	1 cut(s)	387
BtgI	CCRYGG	1 cut(s)	81
BtgZI	GCGATG	1 cut(s)	171
BtrI	CACGTC	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	214, 229
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	4 cut(s)	77, 151, 300, 395
CviAII	CATG	1 cut(s)	82
CviJI	RGCY	6 cut(s)	80, 110, 299, 318, 387, 400
CviKI_1	RGCY	6 cut(s)	80, 110, 299, 318, 387, 400
DdeI	CTNAG	1 cut(s)	203
DpnI	GATC	2 cut(s)	20, 267
DpnII	GATC	2 cut(s)	18, 265
EaeI	YGGCCR	1 cut(s)	385
Eco130I	CCWWGG	1 cut(s)	81
Eco88I	CYCGRG	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	81
FaeI	CATG	1 cut(s)	85
FaiI	YATR	7 cut(s)	83, 122, 124, 138, 287, 293, 384
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FatI	CATG	1 cut(s)	81
FauNDI	CATATG	1 cut(s)	122
Fnu4HI	GCNGC	2 cut(s)	27, 398
FokI	GGATG	2 cut(s)	221, 236
Fsp4HI	GCNGC	2 cut(s)	27, 398
GluI	GCNGC	2 cut(s)	27, 398
HaeIII	GGCC	1 cut(s)	387
Hin1II	CATG	1 cut(s)	85
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HindIII	AAGCTT	1 cut(s)	316
HinfI	GANTC	4 cut(s)	9, 169, 227, 362
HphI	GGTGA	2 cut(s)	89, 127
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	2 cut(s)	14, 58
Hpy188III	TCNNGA	2 cut(s)	6, 231
Hpy8I	GTNNAC	1 cut(s)	343
HpyAV	CCTTC	1 cut(s)	411
HpyCH4III	ACNGT	1 cut(s)	72
HpyCH4IV	ACGT	2 cut(s)	94, 165
HpyCH4V	TGCA	5 cut(s)	37, 250, 353, 368, 397
HpyF3I	CTNAG	1 cut(s)	203
HpySE526I	ACGT	2 cut(s)	94, 165
Hsp92II	CATG	1 cut(s)	85
Kzo9I	GATC	2 cut(s)	18, 265
LpnPI	CCDG	7 cut(s)	36, 59, 177, 216, 259, 398, 401
Lsp1109I	GCAGC	1 cut(s)	409
LweI	GCATC	3 cut(s)	72, 183, 362
MaeII	ACGT	2 cut(s)	94, 165
MaeIII	GTNAC	2 cut(s)	95, 359
MalI	GATC	2 cut(s)	20, 267
MboI	GATC	2 cut(s)	18, 265
MboII	GAAGA	2 cut(s)	80, 383
MflI	RGATCY	1 cut(s)	18
MhlI	GDGCHC	1 cut(s)	187
MlsI	TGGCCA	1 cut(s)	387
MluCI	AATT	1 cut(s)	235
MluNI	TGGCCA	1 cut(s)	387
MlyI	GAGTC	2 cut(s)	18, 356
MnlI	CCTC	4 cut(s)	110, 154, 214, 410
Mox20I	TGGCCA	1 cut(s)	387
MscI	TGGCCA	1 cut(s)	387
MseI	TTAA	2 cut(s)	257, 282
MslI	CAYNNNNRTG	1 cut(s)	381
Msp20I	TGGCCA	1 cut(s)	387
MspCI	CTTAAG	1 cut(s)	256
MvnI	CGCG	1 cut(s)	105
NcoI	CCATGG	1 cut(s)	81
NdeI	CATATG	1 cut(s)	122
NdeII	GATC	2 cut(s)	18, 265
NlaIII	CATG	1 cut(s)	85
NmuCI	GTSAC	2 cut(s)	95, 359
PaeR7I	CTCGAG	1 cut(s)	6
PfeI	GAWTC	2 cut(s)	169, 227
PkrI	GCNGC	2 cut(s)	28, 399
PleI	GAGTC	2 cut(s)	17, 356
PpsI	GAGTC	2 cut(s)	17, 356
PstI	CTGCAG	1 cut(s)	370
PsuI	RGATCY	1 cut(s)	18
RseI	CAYNNNNRTG	1 cut(s)	381
SaqAI	TTAA	2 cut(s)	257, 282
SatI	GCNGC	2 cut(s)	27, 398
Sau3AI	GATC	2 cut(s)	18, 265
SchI	GAGTC	2 cut(s)	18, 356
SduI	GDGCHC	1 cut(s)	187
SetI	ASST	7 cut(s)	97, 102, 112, 168, 320, 342, 421
SfaNI	GCATC	3 cut(s)	72, 183, 362
SfcI	CTRYAG	1 cut(s)	366
Sfr274I	CTCGAG	1 cut(s)	6
SlaI	CTCGAG	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	381
SmlI	CTYRAG	2 cut(s)	6, 256
SmoI	CTYRAG	2 cut(s)	6, 256
Sse9I	AATT	1 cut(s)	235
SsiI	CCGC	2 cut(s)	27, 103
SspI	AATATT	1 cut(s)	243
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	72
TaiI	ACGT	2 cut(s)	97, 168
TaqI	TCGA	2 cut(s)	7, 356
TasI	AATT	1 cut(s)	235
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	2 cut(s)	169, 227
Tru1I	TTAA	2 cut(s)	257, 282
Tru9I	TTAA	2 cut(s)	257, 282
TscAI	CASTG	4 cut(s)	77, 151, 307, 395
TseFI	GTSAC	2 cut(s)	95, 359
TseI	GCWGC	1 cut(s)	397
Tsp45I	GTSAC	2 cut(s)	95, 359
TspDTI	ATGAA	1 cut(s)	240
TspRI	CASTG	4 cut(s)	77, 151, 307, 395
Vha464I	CTTAAG	1 cut(s)	256
XapI	RAATTY	1 cut(s)	235
XcmI	CCANNNNNNNNNTGG	1 cut(s)	321
XhoI	CTCGAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.