Rmu_ssc0000311.1_g000021

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000311.1
N/A
Physical Location & Seq
Forward (+)
97401 .. 98682
1282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000311.1_g000021.1.cds

Sequence Viewer

Length: 627 bp
ctgagcagacgccggggatctgcgcttagtgaagggccactgcaggcgttaggctgctgggatctgcaggcgctgggggggtctgctgcaacgacgggatcgacacggccgaggttgtgcaggaatggggaggaccgaggtgggtctgcgcgggactgggcgggggcagcaacgaggtgggtctgccggtgttggctggcgatccctgatctggacagagcctgtctggacgagaatttttcttttcgacaggttgggatctgctgcaggcggcaggtgggaggccggatttctcggtgcagcgacctgtggagggcacgctgggcggatgagctgcgctgccggaggctagaggcgcggcctggtgtgctgcaagggagatggaggccggacggggccgaatatagagttgaaggtcacacagaattcgcagagcttcactggaatgcacccagcaatgtgcctacttgttcatcatctcatctaaagactatctccgtgaagggattaccggttgagatggaaatcctcaggtgtttgttgcagaatggtcatctgctgaataaggtgttgatttttacaagtcttcgttttgtgcttcaggaacatgatgagctacatggatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

208

Amino Acids

23.36

Weight (kDa)

9.02

Isoelectric Point (pI)

56.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 265
Acc36I ACCTGC 1 cut(s) 265
AccII CGCG 2 cut(s) 151, 358
AciI CCGC 5 cut(s) 151, 161, 271, 326, 358
AclWI GGATC 5 cut(s) 25, 69, 106, 196, 266
AcoI YGGCCR 1 cut(s) 107
AcsI RAATTY 2 cut(s) 235, 425
AcuI CTGAAG 1 cut(s) 584
AcyI GRCGYC 1 cut(s) 10
AfiI CCNNNNNNNGG 2 cut(s) 211, 313
AgeI ACCGGT 1 cut(s) 511
AgsI TTSAA 1 cut(s) 413
AjnI CCWGG 1 cut(s) 361
AluBI AGCT 3 cut(s) 334, 436, 616
AluI AGCT 3 cut(s) 334, 436, 616
AlwI GGATC 5 cut(s) 25, 69, 106, 196, 266
AlwNI CAGNNNCTG 2 cut(s) 73, 222
AoxI GGCC 6 cut(s) 35, 107, 283, 359, 386, 396
ApeKI GCWGC 8 cut(s) 54, 86, 167, 264, 300, 334, 339, 370
ApoI RAATTY 2 cut(s) 235, 425
AsiGI ACCGGT 1 cut(s) 511
AspLEI GCGC 5 cut(s) 25, 73, 151, 339, 358
AspS9I GGNCC 3 cut(s) 35, 133, 396
AsuC2I CCSGG 1 cut(s) 14
AvaII GGWCC 1 cut(s) 133
AxyI CCTNAGG 1 cut(s) 530
BaeGI GKGCMC 1 cut(s) 319
BbsI GAAGAC 1 cut(s) 578
BbvI GCAGC 8 cut(s) 41, 73, 179, 251, 312, 321, 326, 357
BccI CCATC 2 cut(s) 375, 514
BceAI ACGGC 1 cut(s) 122
BciT130I CCWGG 1 cut(s) 363
BcnI CCSGG 1 cut(s) 14
BfaI CTAG 1 cut(s) 350
BfmI CTRYAG 3 cut(s) 41, 65, 265
BfoI RGCGCY 1 cut(s) 74
BfuAI ACCTGC 1 cut(s) 265
Bme1390I CCNGG 2 cut(s) 14, 363
Bme18I GGWCC 1 cut(s) 133
BmgT120I GGNCC 3 cut(s) 35, 133, 396
BmiI GGNNCC 1 cut(s) 397
BmrFI CCNGG 2 cut(s) 14, 363
BmrI ACTGGG 1 cut(s) 166
BmuI ACTGGG 1 cut(s) 166
BpiI GAAGAC 1 cut(s) 578
BpuMI CCSGG 1 cut(s) 14
BsaBI GATNNNNATC 1 cut(s) 524
BsaHI GRCGYC 1 cut(s) 10
BsaJI CCNNGG 3 cut(s) 13, 110, 136
BsaWI WCCGGW 1 cut(s) 511
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 313
Bse118I RCCGGY 2 cut(s) 186, 511
Bse1I ACTGG 2 cut(s) 161, 446
Bse21I CCTNAGG 1 cut(s) 530
Bse3DI GCAATG 1 cut(s) 463
Bse8I GATNNNNATC 1 cut(s) 524
BseBI CCWGG 1 cut(s) 363
BseDI CCNNGG 3 cut(s) 13, 110, 136
BseGI GGATG 1 cut(s) 334
BseJI GATNNNNATC 1 cut(s) 524
BseLI CCNNNNNNNGG 2 cut(s) 211, 313
BseMI GCAATG 1 cut(s) 463
BseMII CTCAG 1 cut(s) 544
BseNI ACTGG 2 cut(s) 161, 446
BseSI GKGCMC 1 cut(s) 319
BseX3I CGGCCG 1 cut(s) 107
BseXI GCAGC 8 cut(s) 41, 73, 179, 251, 312, 321, 326, 357
BseYI CCCAGC 4 cut(s) 57, 73, 321, 452
BsgI GTGCAG 2 cut(s) 139, 319
Bsh1236I CGCG 2 cut(s) 151, 358
Bsh1285I CGRYCG 1 cut(s) 110
BshFI GGCC 6 cut(s) 37, 109, 285, 361, 388, 398
BshTI ACCGGT 1 cut(s) 511
BsiEI CGRYCG 1 cut(s) 110
BsiSI CCGG 6 cut(s) 13, 187, 286, 343, 389, 512
BslFI GGGAC 1 cut(s) 167
BslI CCNNNNNNNGG 2 cut(s) 211, 313
BsmFI GGGAC 1 cut(s) 167
BsmI GAATGC 1 cut(s) 451
BsnI GGCC 6 cut(s) 37, 109, 285, 361, 388, 398
Bsp1286I GDGCHC 1 cut(s) 319
Bsp143I GATC 6 cut(s) 17, 61, 98, 201, 208, 258
BspACI CCGC 5 cut(s) 151, 161, 271, 326, 358
BspANI GGCC 6 cut(s) 37, 109, 285, 361, 388, 398
BspCNI CTCAG 1 cut(s) 543
BspFNI CGCG 2 cut(s) 151, 358
BspLI GGNNCC 1 cut(s) 397
BspMAI CTGCAG 3 cut(s) 45, 69, 269
BspMI ACCTGC 1 cut(s) 265
BspPI GGATC 5 cut(s) 25, 69, 106, 196, 266
BsrDI GCAATG 1 cut(s) 463
BsrFI RCCGGY 2 cut(s) 186, 511
BsrI ACTGG 2 cut(s) 161, 446
BssAI RCCGGY 2 cut(s) 186, 511
BssECI CCNNGG 3 cut(s) 13, 110, 136
BssMI GATC 6 cut(s) 17, 61, 98, 201, 208, 258
BssNI GRCGYC 1 cut(s) 10
Bst2UI CCWGG 1 cut(s) 363
BstACI GRCGYC 1 cut(s) 10
BstC8I GCNNGC 5 cut(s) 45, 69, 198, 269, 319
BstDEI CTNAG 3 cut(s) 2, 26, 530
BstF5I GGATG 1 cut(s) 334
BstFNI CGCG 2 cut(s) 151, 358
BstH2I RGCGCY 1 cut(s) 74
BstHHI GCGC 5 cut(s) 25, 73, 151, 339, 358
BstKTI GATC 6 cut(s) 20, 64, 101, 204, 211, 261
BstMBI GATC 6 cut(s) 17, 61, 98, 201, 208, 258
BstMCI CGRYCG 1 cut(s) 110
BstMWI GCNNNNNNNGC 4 cut(s) 167, 323, 355, 367
BstNI CCWGG 1 cut(s) 363
BstSCI CCNGG 2 cut(s) 12, 361
BstSFI CTRYAG 3 cut(s) 41, 65, 265
BstSLI GKGCMC 1 cut(s) 319
BstUI CGCG 2 cut(s) 151, 358
BstV1I GCAGC 8 cut(s) 41, 73, 179, 251, 312, 321, 326, 357
BstV2I GAAGAC 1 cut(s) 578
BstX2I RGATCY 3 cut(s) 17, 61, 258
BstYI RGATCY 3 cut(s) 17, 61, 258
BstZI CGGCCG 1 cut(s) 107
Bsu36I CCTNAGG 1 cut(s) 530
BsuRI GGCC 6 cut(s) 37, 109, 285, 361, 388, 398
BtsCI GGATG 1 cut(s) 334
BtsI GCAGTG 1 cut(s) 38
BtsIMutI CAGTG 2 cut(s) 38, 439
BveI ACCTGC 1 cut(s) 265
Cac8I GCNNGC 5 cut(s) 45, 69, 198, 269, 319
CaiI CAGNNNCTG 2 cut(s) 73, 222
CfoI GCGC 5 cut(s) 25, 73, 151, 339, 358
Cfr10I RCCGGY 2 cut(s) 186, 511
Cfr13I GGNCC 3 cut(s) 35, 133, 396
CseI GACGC 1 cut(s) 18
CspAI ACCGGT 1 cut(s) 511
CviAII CATG 2 cut(s) 608, 620
DdeI CTNAG 3 cut(s) 2, 26, 530
DpnI GATC 6 cut(s) 19, 63, 100, 203, 210, 260
DpnII GATC 6 cut(s) 17, 61, 98, 201, 208, 258
EaeI YGGCCR 1 cut(s) 107
EagI CGGCCG 1 cut(s) 107
EciI GGCGGA 1 cut(s) 341
EclXI CGGCCG 1 cut(s) 107
Eco47I GGWCC 1 cut(s) 133
Eco52I CGGCCG 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 584
Eco81I CCTNAGG 1 cut(s) 530
EcoRI GAATTC 1 cut(s) 425
EcoRII CCWGG 1 cut(s) 361
FaeI CATG 2 cut(s) 611, 623
FaiI YATR 3 cut(s) 405, 609, 621
FaqI GGGAC 1 cut(s) 167
FatI CATG 2 cut(s) 607, 619
FauI CCCGC 2 cut(s) 144, 154
FokI GGATG 1 cut(s) 341
FspBI CTAG 1 cut(s) 350
GlaI GCGC 5 cut(s) 24, 72, 150, 338, 357
GsaI CCCAGC 4 cut(s) 61, 77, 325, 456
HaeII RGCGCY 1 cut(s) 74
HaeIII GGCC 6 cut(s) 37, 109, 285, 361, 388, 398
HapII CCGG 6 cut(s) 13, 187, 286, 343, 389, 512
HgaI GACGC 1 cut(s) 18
HhaI GCGC 5 cut(s) 25, 73, 151, 339, 358
Hin1I GRCGYC 1 cut(s) 10
Hin1II CATG 2 cut(s) 611, 623
Hin6I GCGC 5 cut(s) 23, 71, 149, 337, 356
HinP1I GCGC 5 cut(s) 23, 71, 149, 337, 356
HpaII CCGG 6 cut(s) 13, 187, 286, 343, 389, 512
Hpy188III TCNNGA 3 cut(s) 212, 227, 602
Hpy99I CGWCG 1 cut(s) 97
HpyAV CCTTC 3 cut(s) 26, 407, 496
HpyCH4V TGCA 9 cut(s) 43, 67, 89, 120, 267, 300, 373, 449, 544
HpyF10VI GCNNNNNNNGC 4 cut(s) 167, 323, 355, 367
HpyF3I CTNAG 3 cut(s) 2, 26, 530
Hsp92I GRCGYC 1 cut(s) 10
Hsp92II CATG 2 cut(s) 611, 623
HspAI GCGC 5 cut(s) 23, 71, 149, 337, 356
Kzo9I GATC 6 cut(s) 17, 61, 98, 201, 208, 258
Lsp1109I GCAGC 8 cut(s) 41, 73, 179, 251, 312, 321, 326, 357
MaeI CTAG 1 cut(s) 350
MaeIII GTNAC 1 cut(s) 416
MalI GATC 6 cut(s) 19, 63, 100, 203, 210, 260
MboI GATC 6 cut(s) 17, 61, 98, 201, 208, 258
MboII GAAGA 1 cut(s) 578
MflI RGATCY 3 cut(s) 17, 61, 258
MhlI GDGCHC 1 cut(s) 319
MluCI AATT 2 cut(s) 235, 425
MslI CAYNNNNRTG 1 cut(s) 444
MspI CCGG 6 cut(s) 13, 187, 286, 343, 389, 512
MspR9I CCNGG 2 cut(s) 14, 363
Mva1269I GAATGC 1 cut(s) 451
MvaI CCWGG 1 cut(s) 363
MvnI CGCG 2 cut(s) 151, 358
MwoI GCNNNNNNNGC 4 cut(s) 167, 323, 355, 367
NciI CCSGG 1 cut(s) 14
NdeII GATC 6 cut(s) 17, 61, 98, 201, 208, 258
NlaIII CATG 2 cut(s) 611, 623
NlaIV GGNNCC 1 cut(s) 397
NmeAIII GCCGAG 1 cut(s) 135
NmuCI GTSAC 1 cut(s) 416
PaqCI CACCTGC 1 cut(s) 265
PcsI WCGNNNNNNNCGW 2 cut(s) 98, 107
PctI GAATGC 1 cut(s) 451
PinAI ACCGGT 1 cut(s) 511
Psp6I CCWGG 1 cut(s) 361
PspFI CCCAGC 4 cut(s) 57, 73, 321, 452
PspGI CCWGG 1 cut(s) 361
PspN4I GGNNCC 1 cut(s) 397
PspPI GGNCC 3 cut(s) 35, 133, 396
PstI CTGCAG 3 cut(s) 45, 69, 269
PstNI CAGNNNCTG 2 cut(s) 73, 222
PsuI RGATCY 3 cut(s) 17, 61, 258
RseI CAYNNNNRTG 1 cut(s) 444
Sau3AI GATC 6 cut(s) 17, 61, 98, 201, 208, 258
Sau96I GGNCC 3 cut(s) 35, 133, 396
ScrFI CCNGG 2 cut(s) 14, 363
SduI GDGCHC 1 cut(s) 319
SfcI CTRYAG 3 cut(s) 41, 65, 265
SinI GGWCC 1 cut(s) 133
SmiMI CAYNNNNRTG 1 cut(s) 444
Sse9I AATT 2 cut(s) 235, 425
SsiI CCGC 5 cut(s) 151, 161, 271, 326, 358
SspMI CTAG 1 cut(s) 350
StyD4I CCNGG 2 cut(s) 12, 361
TaqI TCGA 2 cut(s) 101, 247
TaqII GACCGA 1 cut(s) 150
TasI AATT 2 cut(s) 235, 425
TauI GCSGC 2 cut(s) 274, 361
TscAI CASTG 2 cut(s) 45, 446
TseFI GTSAC 1 cut(s) 416
TseI GCWGC 8 cut(s) 54, 86, 167, 264, 300, 334, 339, 370
Tsp45I GTSAC 1 cut(s) 416
TspDTI ATGAA 1 cut(s) 462
TspGWI ACGGA 1 cut(s) 487
TspRI CASTG 2 cut(s) 45, 446
VpaK11BI GGWCC 1 cut(s) 133
XapI RAATTY 2 cut(s) 235, 425
XspI CTAG 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.