Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000316.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

25941 .. 28093

Gene Structure 2153 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

atggatgataactactttatcagtggttcaatagatggcaaagttcgcatttggggaattccttgctgtcaagttgttgattatagcgatgtacgagatatagtttctgcggtgtgctatcgccctgatgggcagggagctattgtaggctcgatgacaggcatatgccgcttttataatacatcagataatcatttgcaaatggacgctgaaatctgtttgtacagtaaaaagaaggctccctgcaaaaagataacaggcttcgagtttttcccacaagatcctagcaaagtaatggtcacttgcgccgattcgcaagtcagaattcttcatggtctgaatgtggttggaaaatacaagggattacggaatgcagcaaacctgagatctgcgacttttacttcagatgggaaacatataatatcagcaagtgaggattctaatgtatacatatggaactgcaaagattttgagactttaactttgtgcaaaagcatgatggaaagaggagaatgtccgcccctcatggttgtttttgatcctcaggaggggttcacagttgaggctgataagcttataaaggattggacaataatcacagaatacactggagatgttgattacttgaagaaccgtgaaaatgatgatggggatagcattatgacattactttcagctgctgatccttcaaaaagccttgtcatttgtcctgacaagtatggcaatattgcccgctacatcaatggcatcaacaatcacacaccggaagggagaaagaagcagaacctaaaatgtgtaagatttgatgtcaacggcgagtctcgggtattactgattgccaacagggacataccaaagggagagagattgtattatgattacaatgcatatgagaatgaatatcctactgagcactttgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009791 GO:0009889 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010556 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0032504 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046976 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070734 GO:0071704 GO:0071840 GO:0080090 GO:0090567 GO:0099402 GO:0140096 GO:1901564 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD SET

Protein Analysis

307

Amino Acids

34.66

Weight (kDa)

5.36

Isoelectric Point (pI)

21.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_Gbeta	PF25391	2 - 153	5.7e-06	G protein beta WD-40 repeat protein
Beta-prop_WDR5	PF25175	3 - 163	7.5e-18	WDR5 beta-propeller domain
Beta-prop_EML_2	PF23414	3 - 165	3.6e-11	Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st	PF24817	3 - 163	1.8e-08	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	4 - 166	4e-11	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	7 - 198	1.2e-06	WDR3 first beta-propeller domain
SET	PF00856	184 - 295	3.1e-09	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	177, 578
AccI	GTMKAC	1 cut(s)	447
AciI	CCGC	4 cut(s)	110, 169, 518, 733
AclWI	GGATC	3 cut(s)	275, 533, 677
AcsI	RAATTY	2 cut(s)	57, 324
AcuI	CTGAAG	1 cut(s)	387
AdeI	CACNNNGTG	1 cut(s)	919
AfaI	GTAC	2 cut(s)	93, 224
AfiI	CCNNNNNNNGG	1 cut(s)	548
AgsI	TTSAA	3 cut(s)	30, 628, 690
AluBI	AGCT	3 cut(s)	140, 574, 677
AluI	AGCT	3 cut(s)	140, 574, 677
Alw21I	GWGCWC	1 cut(s)	915
Alw26I	GTCTC	2 cut(s)	467, 825
AlwI	GGATC	3 cut(s)	275, 533, 677
AlwNI	CAGNNNCTG	1 cut(s)	680
Ama87I	CYCGRG	1 cut(s)	822
ApeKI	GCWGC	2 cut(s)	374, 677
ApoI	RAATTY	2 cut(s)	57, 324
ArsI	GACNNNNNNTTYG	4 cut(s)	282, 314, 466, 498
AspLEI	GCGC	1 cut(s)	308
AvaI	CYCGRG	1 cut(s)	822
AxyI	CCTNAGG	1 cut(s)	543
Bbv12I	GWGCWC	1 cut(s)	915
BbvI	GCAGC	2 cut(s)	386, 664
BccI	CCATC	5 cut(s)	29, 122, 401, 493, 641
BceAI	ACGGC	1 cut(s)	829
BcoDI	GTCTC	2 cut(s)	467, 825
BfaI	CTAG	1 cut(s)	285
BglII	AGATCT	1 cut(s)	386
BisI	GCNGC	3 cut(s)	169, 375, 678
BlsI	GCNGC	3 cut(s)	170, 376, 679
BmeT110I	CYCGRG	1 cut(s)	822
BmiI	GGNNCC	1 cut(s)	240
BmsI	GCATC	1 cut(s)	756
BpmI	CTGGAG	1 cut(s)	630
BsaWI	WCCGGW	1 cut(s)	763
BsaXI	ACNNNNNCTCC	2 cut(s)	129, 159
Bsc4I	CCNNNNNNNGG	1 cut(s)	548
Bse1I	ACTGG	1 cut(s)	613
Bse21I	CCTNAGG	1 cut(s)	543
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	548
BseMII	CTCAG	3 cut(s)	374, 557, 900
BseNI	ACTGG	1 cut(s)	613
BseRI	GAGGAG	1 cut(s)	522
BseXI	GCAGC	2 cut(s)	386, 664
BsiHKAI	GWGCWC	1 cut(s)	915
BsiHKCI	CYCGRG	1 cut(s)	822
BsiSI	CCGG	1 cut(s)	764
BslFI	GGGAC	1 cut(s)	860
BslI	CCNNNNNNNGG	1 cut(s)	548
BsmAI	GTCTC	2 cut(s)	467, 825
BsmFI	GGGAC	1 cut(s)	860
BsmI	GAATGC	1 cut(s)	376
BsoBI	CYCGRG	1 cut(s)	822
Bsp1286I	GDGCHC	1 cut(s)	915
Bsp1407I	TGTACA	1 cut(s)	222
Bsp143I	GATC	4 cut(s)	280, 386, 538, 682
BspACI	CCGC	4 cut(s)	110, 169, 518, 733
BspCNI	CTCAG	3 cut(s)	375, 556, 901
BspLI	GGNNCC	1 cut(s)	240
BspPI	GGATC	3 cut(s)	275, 533, 677
BsrGI	TGTACA	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	613
BssMI	GATC	4 cut(s)	280, 386, 538, 682
BssNAI	GTATAC	1 cut(s)	448
Bst1107I	GTATAC	1 cut(s)	448
Bst4CI	ACNGT	3 cut(s)	227, 559, 635
BstAUI	TGTACA	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	733
BstDEI	CTNAG	3 cut(s)	383, 543, 909
BstF5I	GGATG	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	4 cut(s)	283, 389, 541, 685
BstMAI	GTCTC	2 cut(s)	467, 825
BstMBI	GATC	4 cut(s)	280, 386, 538, 682
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 168
BstV1I	GCAGC	2 cut(s)	386, 664
BstX2I	RGATCY	2 cut(s)	280, 386
BstYI	RGATCY	2 cut(s)	280, 386
BstZ17I	GTATAC	1 cut(s)	448
Bsu36I	CCTNAGG	1 cut(s)	543
BtgZI	GCGATG	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	2 cut(s)	28, 606
Cac8I	GCNNGC	1 cut(s)	733
CaiI	CAGNNNCTG	1 cut(s)	680
CfoI	GCGC	1 cut(s)	308
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	2 cut(s)	92, 223
CviAII	CATG	3 cut(s)	332, 496, 526
CviJI	RGCY	8 cut(s)	140, 150, 239, 261, 566, 574, 677, 696
CviKI_1	RGCY	8 cut(s)	140, 150, 239, 261, 566, 574, 677, 696
CviQI	GTAC	2 cut(s)	92, 223
DdeI	CTNAG	3 cut(s)	383, 543, 909
DpnI	GATC	4 cut(s)	282, 388, 540, 684
DpnII	GATC	4 cut(s)	280, 386, 538, 682
DraIII	CACNNNGTG	1 cut(s)	919
EciI	GGCGGA	1 cut(s)	507
Eco57I	CTGAAG	1 cut(s)	387
Eco81I	CCTNAGG	1 cut(s)	543
Eco88I	CYCGRG	1 cut(s)	822
EcoRI	GAATTC	2 cut(s)	57, 324
EcoT22I	ATGCAT	1 cut(s)	889
FaeI	CATG	3 cut(s)	335, 499, 529
FaqI	GGGAC	1 cut(s)	860
FatI	CATG	3 cut(s)	331, 495, 525
FauI	CCCGC	1 cut(s)	740
FauNDI	CATATG	3 cut(s)	164, 452, 889
FblI	GTMKAC	1 cut(s)	447
Fnu4HI	GCNGC	3 cut(s)	169, 375, 678
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	3 cut(s)	169, 375, 678
FspBI	CTAG	1 cut(s)	285
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	3 cut(s)	169, 375, 678
GsuI	CTGGAG	1 cut(s)	630
HapII	CCGG	1 cut(s)	764
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	1 cut(s)	308
Hin1II	CATG	3 cut(s)	335, 499, 529
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HincII	GTYRAC	1 cut(s)	811
HindII	GTYRAC	1 cut(s)	811
HindIII	AAGCTT	1 cut(s)	572
HinfI	GANTC	3 cut(s)	311, 437, 818
HpaII	CCGG	1 cut(s)	764
Hpy166II	GTNNAC	3 cut(s)	448, 555, 811
Hpy188I	TCNGA	4 cut(s)	187, 323, 339, 406
Hpy188III	TCNNGA	2 cut(s)	545, 710
Hpy8I	GTNNAC	3 cut(s)	448, 555, 811
HpyAV	CCTTC	3 cut(s)	229, 696, 761
HpyCH4III	ACNGT	3 cut(s)	227, 559, 635
HpyCH4V	TGCA	6 cut(s)	199, 246, 374, 462, 489, 887
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 168
HpyF3I	CTNAG	3 cut(s)	383, 543, 909
Hsp92II	CATG	3 cut(s)	335, 499, 529
HspAI	GCGC	1 cut(s)	306
Kzo9I	GATC	4 cut(s)	280, 386, 538, 682
LmnI	GCTCC	2 cut(s)	137, 244
Lsp1109I	GCAGC	2 cut(s)	386, 664
LweI	GCATC	1 cut(s)	756
MaeI	CTAG	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	4 cut(s)	282, 388, 540, 684
MboI	GATC	4 cut(s)	280, 386, 538, 682
MboII	GAAGA	2 cut(s)	320, 640
MflI	RGATCY	2 cut(s)	280, 386
MhlI	GDGCHC	1 cut(s)	915
MluCI	AATT	2 cut(s)	57, 324
MlyI	GAGTC	1 cut(s)	827
MmeI	TCCRAC	1 cut(s)	328
MnlI	CCTC	6 cut(s)	427, 500, 533, 541, 552, 556
Mph1103I	ATGCAT	1 cut(s)	889
MseI	TTAA	1 cut(s)	479
MspA1I	CMGCKG	1 cut(s)	677
MspI	CCGG	1 cut(s)	764
Mva1269I	GAATGC	1 cut(s)	376
MwoI	GCNNNNNNNGC	2 cut(s)	45, 168
NdeI	CATATG	3 cut(s)	164, 452, 889
NdeII	GATC	4 cut(s)	280, 386, 538, 682
NlaIII	CATG	3 cut(s)	335, 499, 529
NlaIV	GGNNCC	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	298
NsiI	ATGCAT	1 cut(s)	889
PctI	GAATGC	1 cut(s)	376
PfeI	GAWTC	2 cut(s)	311, 437
PkrI	GCNGC	3 cut(s)	170, 376, 679
PleI	GAGTC	1 cut(s)	826
PpsI	GAGTC	1 cut(s)	826
PsiI	TTATAA	2 cut(s)	177, 578
PspN4I	GGNNCC	1 cut(s)	240
PstNI	CAGNNNCTG	1 cut(s)	680
PsuI	RGATCY	2 cut(s)	280, 386
PvuII	CAGCTG	1 cut(s)	677
RsaI	GTAC	2 cut(s)	93, 224
RsaNI	GTAC	2 cut(s)	92, 223
SaqAI	TTAA	1 cut(s)	479
SatI	GCNGC	3 cut(s)	169, 375, 678
Sau3AI	GATC	4 cut(s)	280, 386, 538, 682
SchI	GAGTC	1 cut(s)	827
SduI	GDGCHC	1 cut(s)	915
SetI	ASST	5 cut(s)	142, 384, 576, 679, 789
SfaNI	GCATC	1 cut(s)	756
Sse9I	AATT	2 cut(s)	57, 324
SsiI	CCGC	4 cut(s)	110, 169, 518, 733
SspI	AATATT	1 cut(s)	727
SspMI	CTAG	1 cut(s)	285
TaaI	ACNGT	3 cut(s)	227, 559, 635
TaqI	TCGA	2 cut(s)	152, 264
TasI	AATT	2 cut(s)	57, 324
TatI	WGTACW	1 cut(s)	222
TauI	GCSGC	1 cut(s)	171
TfiI	GAWTC	2 cut(s)	311, 437
Tru1I	TTAA	1 cut(s)	479
Tru9I	TTAA	1 cut(s)	479
TscAI	CASTG	2 cut(s)	28, 613
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	2 cut(s)	374, 677
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	2 cut(s)	320, 912
TspGWI	ACGGA	1 cut(s)	382
TspRI	CASTG	2 cut(s)	28, 613
XapI	RAATTY	2 cut(s)	57, 324
XmiI	GTMKAC	1 cut(s)	447
XspI	CTAG	1 cut(s)	285
Zsp2I	ATGCAT	1 cut(s)	889

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.