Rmu_ssc0000327.1_g000002

26S proteasome non-atpase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000327.1
N/A
Physical Location & Seq
Reverse (-)
3293 .. 3550
258 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 258 bp
atgtcagaggcaactggtgtggatcaggacttggctctagctcttcaaatgtccatgcaggaaagcgcaggaggagcatcatcatccgagacggttgatgtgagcaaggtgttggaggatcagtcttttctttcgtctatcctggaatctcttccgggagttgaccccaatgatccttctgtggaagagtttcttgcatctgtgattaatcagtttaaaaagaatgaagaagatccatctaatgacgaggacaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000502 GO:0001101 GO:0001653 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009555 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009743 GO:0009744 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0010015 GO:0010029 GO:0010033 GO:0010053 GO:0010054 GO:0010150 GO:0010498 GO:0016020 GO:0016043 GO:0016049 GO:0019538 GO:0019941 GO:0021700 GO:0022414 GO:0022607 GO:0022622 GO:0023052 GO:0030154 GO:0030163 GO:0031593 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0033993 GO:0034285 GO:0034622 GO:0035966 GO:0038023 GO:0040007 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048364 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048468 GO:0048469 GO:0048528 GO:0048580 GO:0048588 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0051788 GO:0060089 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080147 GO:0090558 GO:0090567 GO:0090627 GO:0090693 GO:0090696 GO:0090697 GO:0090698 GO:0097305 GO:0099402 GO:0140030 GO:1900140 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369 GO:1905392 GO:1905393 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
UIM VWA_2

Protein Analysis

85

Amino Acids

9.08

Weight (kDa)

4.05

Isoelectric Point (pI)

60.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 30, 126, 167, 227
AgsI TTSAA 1 cut(s) 47
AjnI CCWGG 1 cut(s) 141
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
Alw26I GTCTC 1 cut(s) 83
AlwI GGATC 4 cut(s) 30, 126, 167, 227
AseI ATTAAT 1 cut(s) 207
Asp700I GAANNNNTTC 2 cut(s) 150, 189
AspLEI GCGC 1 cut(s) 68
AsuC2I CCSGG 1 cut(s) 156
BccI CCATC 1 cut(s) 244
BciT130I CCWGG 1 cut(s) 143
BcnI CCSGG 1 cut(s) 156
BcoDI GTCTC 1 cut(s) 83
BfaI CTAG 1 cut(s) 38
Bme1390I CCNGG 2 cut(s) 143, 156
BmrFI CCNGG 2 cut(s) 143, 156
BmsI GCATC 2 cut(s) 86, 206
BpuMI CCSGG 1 cut(s) 156
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bse1I ACTGG 1 cut(s) 19
BseBI CCWGG 1 cut(s) 143
BseGI GGATG 1 cut(s) 83
BseNI ACTGG 1 cut(s) 19
BseRI GAGGAG 1 cut(s) 87
BsiSI CCGG 1 cut(s) 155
BsmAI GTCTC 1 cut(s) 83
BsmBI CGTCTC 1 cut(s) 83
Bsp143I GATC 4 cut(s) 22, 118, 172, 232
BspPI GGATC 4 cut(s) 30, 126, 167, 227
BspQI GCTCTTC 1 cut(s) 48
BsrI ACTGG 1 cut(s) 19
BssMI GATC 4 cut(s) 22, 118, 172, 232
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 1 cut(s) 94
Bst6I CTCTTC 3 cut(s) 48, 156, 180
BstF5I GGATG 1 cut(s) 83
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 4 cut(s) 25, 121, 175, 235
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 4 cut(s) 22, 118, 172, 232
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstNI CCWGG 1 cut(s) 143
BstSCI CCNGG 2 cut(s) 141, 154
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BtsCI GGATG 1 cut(s) 83
CfoI GCGC 1 cut(s) 68
CspCI CAANNNNNGTGG 1 cut(s) 35
CviAII CATG 1 cut(s) 55
CviJI RGCY 2 cut(s) 35, 41
CviKI_1 RGCY 2 cut(s) 35, 41
DpnI GATC 4 cut(s) 24, 120, 174, 234
DpnII GATC 4 cut(s) 22, 118, 172, 232
DraI TTTAAA 1 cut(s) 217
Eam1104I CTCTTC 3 cut(s) 48, 156, 180
EarI CTCTTC 3 cut(s) 48, 156, 180
EcoRII CCWGG 1 cut(s) 141
Esp3I CGTCTC 1 cut(s) 83
FaeI CATG 1 cut(s) 58
FaiI YATR 1 cut(s) 56
FalI AAGNNNNNCTT 2 cut(s) 177, 209
FatI CATG 1 cut(s) 54
FokI GGATG 1 cut(s) 70
FspBI CTAG 1 cut(s) 38
GlaI GCGC 1 cut(s) 67
HapII CCGG 1 cut(s) 155
HhaI GCGC 1 cut(s) 68
Hin1II CATG 1 cut(s) 58
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 1 cut(s) 146
HpaII CCGG 1 cut(s) 155
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 2 cut(s) 7, 88
Hpy188III TCNNGA 1 cut(s) 26
Hpy8I GTNNAC 1 cut(s) 163
HpyAV CCTTC 1 cut(s) 186
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4V TGCA 2 cut(s) 58, 197
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
Hsp92II CATG 1 cut(s) 58
HspAI GCGC 1 cut(s) 66
Kzo9I GATC 4 cut(s) 22, 118, 172, 232
LguI GCTCTTC 1 cut(s) 48
LmnI GCTCC 1 cut(s) 74
LpnPI CCDG 6 cut(s) 11, 44, 54, 128, 155, 168
LweI GCATC 2 cut(s) 86, 206
MaeI CTAG 1 cut(s) 38
MalI GATC 4 cut(s) 24, 120, 174, 234
MboI GATC 4 cut(s) 22, 118, 172, 232
MboII GAAGA 5 cut(s) 35, 143, 197, 239, 242
MflI RGATCY 1 cut(s) 232
MmeI TCCRAC 1 cut(s) 93
MnlI CCTC 3 cut(s) 65, 109, 241
MroXI GAANNNNTTC 2 cut(s) 150, 189
MseI TTAA 2 cut(s) 207, 216
MspI CCGG 1 cut(s) 155
MspR9I CCNGG 2 cut(s) 143, 156
MvaI CCWGG 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 74
NciI CCSGG 1 cut(s) 156
NdeII GATC 4 cut(s) 22, 118, 172, 232
NlaIII CATG 1 cut(s) 58
PciSI GCTCTTC 1 cut(s) 48
PdmI GAANNNNTTC 2 cut(s) 150, 189
PfeI GAWTC 1 cut(s) 146
PfoI TCCNGGA 2 cut(s) 141, 154
PshBI ATTAAT 1 cut(s) 207
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
PsuI RGATCY 1 cut(s) 232
SapI GCTCTTC 1 cut(s) 48
SaqAI TTAA 2 cut(s) 207, 216
Sau3AI GATC 4 cut(s) 22, 118, 172, 232
ScrFI CCNGG 2 cut(s) 143, 156
SetI ASST 2 cut(s) 43, 111
SfaNI GCATC 2 cut(s) 86, 206
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 2 cut(s) 141, 154
TaaI ACNGT 1 cut(s) 94
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 2 cut(s) 207, 216
Tru9I TTAA 2 cut(s) 207, 216
TspDTI ATGAA 1 cut(s) 240
VspI ATTAAT 1 cut(s) 207
XmnI GAANNNNTTC 2 cut(s) 150, 189
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.