Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000330.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

94467 .. 94790

Gene Structure 324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

atgcagatgagcatgatcatcaacgagtctctaagattatatcctcccattgtttccctagtaaggaaggttgataaggaagttagagtaggaaaccttgttgtccccgctgatgttgaattgctcatcccaaacctagcattccaccatgagccacaacttgggggcaagatgtacaactattcaaaccggagaggttctcagaaggggttgctaaagctacaaggaacaacagagctgcattcttacccttcggaatgggacctcgaacttgtgtgggcttcaacttcgcgacaacagaggcaaagattgttgtgtcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00905 map00905

Pfam Domains

Protein Families

p450

Protein Analysis

107

Amino Acids

12.35

Weight (kDa)

9.25

Isoelectric Point (pI)

42.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	4 - 53	4.5e-08	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	161
AccII	CGCG	1 cut(s)	292
AciI	CCGC	1 cut(s)	108
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	2 cut(s)	63, 161
AgsI	TTSAA	3 cut(s)	119, 186, 285
AluBI	AGCT	2 cut(s)	220, 238
AluI	AGCT	2 cut(s)	220, 238
Alw26I	GTCTC	1 cut(s)	33
ApeKI	GCWGC	1 cut(s)	238
AspS9I	GGNCC	1 cut(s)	262
AvaII	GGWCC	1 cut(s)	262
BbvI	GCAGC	1 cut(s)	225
BclI	TGATCA	1 cut(s)	15
BcoDI	GTCTC	1 cut(s)	33
BfaI	CTAG	2 cut(s)	59, 137
BisI	GCNGC	1 cut(s)	239
BlsI	GCNGC	1 cut(s)	240
Bme18I	GGWCC	1 cut(s)	262
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	1 cut(s)	263
BplI	GAGNNNNNCTC	2 cut(s)	184, 216
BsaWI	WCCGGW	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 161
BseGI	GGATG	1 cut(s)	126
BseLI	CCNNNNNNNGG	2 cut(s)	63, 161
BseMII	CTCAG	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	225
Bsh1236I	CGCG	1 cut(s)	292
BsiSI	CCGG	1 cut(s)	190
BslFI	GGGAC	2 cut(s)	89, 275
BslI	CCNNNNNNNGG	2 cut(s)	63, 161
BsmAI	GTCTC	1 cut(s)	33
BsmFI	GGGAC	2 cut(s)	89, 275
BsmI	GAATGC	2 cut(s)	140, 241
Bsp1407I	TGTACA	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	15
Bsp68I	TCGCGA	1 cut(s)	292
BspACI	CCGC	1 cut(s)	108
BspCNI	CTCAG	1 cut(s)	214
BspFNI	CGCG	1 cut(s)	292
BspLI	GGNNCC	1 cut(s)	263
BsrGI	TGTACA	1 cut(s)	174
BssMI	GATC	1 cut(s)	15
BstAUI	TGTACA	1 cut(s)	174
BstDEI	CTNAG	2 cut(s)	32, 201
BstF5I	GGATG	1 cut(s)	126
BstFNI	CGCG	1 cut(s)	292
BstKTI	GATC	1 cut(s)	18
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	15
BstUI	CGCG	1 cut(s)	292
BstV1I	GCAGC	1 cut(s)	225
BtsCI	GGATG	1 cut(s)	126
BtuMI	TCGCGA	1 cut(s)	292
Cfr13I	GGNCC	1 cut(s)	262
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	2 cut(s)	13, 149
CviJI	RGCY	4 cut(s)	154, 220, 238, 281
CviKI_1	RGCY	4 cut(s)	154, 220, 238, 281
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	2 cut(s)	32, 201
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	262
EcoO109I	RGGNCCY	1 cut(s)	262
FaeI	CATG	2 cut(s)	16, 152
FaiI	YATR	3 cut(s)	14, 40, 150
FaqI	GGGAC	2 cut(s)	89, 275
FatI	CATG	2 cut(s)	12, 148
FauI	CCCGC	1 cut(s)	115
FbaI	TGATCA	1 cut(s)	15
Fnu4HI	GCNGC	1 cut(s)	239
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	239
FspBI	CTAG	2 cut(s)	59, 137
GluI	GCNGC	1 cut(s)	239
HapII	CCGG	1 cut(s)	190
Hin1II	CATG	2 cut(s)	16, 152
HinfI	GANTC	1 cut(s)	26
HpaII	CCGG	1 cut(s)	190
Hpy188I	TCNGA	2 cut(s)	204, 256
Hpy188III	TCNNGA	1 cut(s)	291
HpyAV	CCTTC	3 cut(s)	61, 199, 261
HpyCH4V	TGCA	2 cut(s)	4, 241
HpyF3I	CTNAG	2 cut(s)	32, 201
Hsp92II	CATG	2 cut(s)	16, 152
Ksp22I	TGATCA	1 cut(s)	15
Kzo9I	GATC	1 cut(s)	15
LpnPI	CCDG	1 cut(s)	203
Lsp1109I	GCAGC	1 cut(s)	225
MaeI	CTAG	2 cut(s)	59, 137
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MluCI	AATT	1 cut(s)	119
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	4 cut(s)	54, 188, 275, 294
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	1 cut(s)	190
Mva1269I	GAATGC	2 cut(s)	140, 241
MvnI	CGCG	1 cut(s)	292
NdeII	GATC	1 cut(s)	15
NlaIII	CATG	2 cut(s)	16, 152
NlaIV	GGNNCC	1 cut(s)	263
NruI	TCGCGA	1 cut(s)	292
PctI	GAATGC	2 cut(s)	140, 241
PflMI	CCANNNNNTGG	1 cut(s)	161
PkrI	GCNGC	1 cut(s)	240
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
PpuMI	RGGWCCY	1 cut(s)	262
Psp5II	RGGWCCY	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	263
PspPI	GGNCC	1 cut(s)	262
PspPPI	RGGWCCY	1 cut(s)	262
RruI	TCGCGA	1 cut(s)	292
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SatI	GCNGC	1 cut(s)	239
Sau3AI	GATC	1 cut(s)	15
Sau96I	GGNCC	1 cut(s)	262
SchI	GAGTC	1 cut(s)	35
SetI	ASST	7 cut(s)	72, 99, 138, 199, 222, 240, 267
SinI	GGWCC	1 cut(s)	262
Sse9I	AATT	1 cut(s)	119
SsiI	CCGC	1 cut(s)	108
SspMI	CTAG	2 cut(s)	59, 137
TaqI	TCGA	1 cut(s)	267
TasI	AATT	1 cut(s)	119
TatI	WGTACW	1 cut(s)	174
TseI	GCWGC	1 cut(s)	238
Van91I	CCANNNNNTGG	1 cut(s)	161
VpaK11BI	GGWCC	1 cut(s)	262
XspI	CTAG	2 cut(s)	59, 137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.