Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000335.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1508

Gene Structure 1508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000335.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 764 bp

cacccccagcatcacctccagcagcatcaccgccacctccaacaccaacttcccctcctccggcggcaccagcatccaatgtatccccaccaccgccaccatcaggagactcccctcctcccaaagcctccccaacacctccatcagaagcctcaccgccacctaaatcccctcctcctccagctgatgcatcaccgccttcatccacttctccaccgccaccaaaagcaccagaaaagtctcctccctcccccactgttacaccacctccatctggttctcagtctgctccgccaccagctgataacacccctcccaagtccacatcaccgccgccttcagttccctcatcgtcgtcttcccctcctgctccgcccactaattcatcagctcctgctccctcaggcttgcctgctatcccgacacagaaaccaactgcaaagtcaactaatgatgccaatgtaacggcaaatgccacacctggaaacacaaaagttaacactggaggagctgtggcaattggcattgtggttggggtgctggtgctcagtcttgttgtgatggccgtgtggttcaccaagaagaagaagagaaaaagtgggtcgaatctttacaccatgccttctccctttgcttcatcccagaattcagtttaccaaacacctcagctgcatcttctcacagcaagttcagaagtgcttcctctcacagcaagttcggaagtgcttcctttcacagcacagcaatcccaaactaagccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

253

Amino Acids

25.0

Weight (kDa)

9.78

Isoelectric Point (pI)

98.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	66
AcoI	YGGCCR	1 cut(s)	563
AcsI	RAATTY	1 cut(s)	645
AcuI	CTGAAG	1 cut(s)	323
AfiI	CCNNNNNNNGG	3 cut(s)	60, 103, 274
AjnI	CCWGG	1 cut(s)	480
AjuI	GAANNNNNNNTTGG	2 cut(s)	33, 65
AluBI	AGCT	5 cut(s)	184, 301, 391, 511, 669
AluI	AGCT	5 cut(s)	184, 301, 391, 511, 669
Alw21I	GWGCWC	1 cut(s)	548
Alw26I	GTCTC	2 cut(s)	101, 245
AlwNI	CAGNNNCTG	1 cut(s)	394
AoxI	GGCC	1 cut(s)	563
ApeKI	GCWGC	2 cut(s)	22, 669
ApoI	RAATTY	1 cut(s)	645
Asp700I	GAANNNNTTC	2 cut(s)	698, 725
AsuHPI	GGTGA	6 cut(s)	5, 20, 146, 185, 320, 567
AxyI	CCTNAGG	1 cut(s)	402
BanI	GGYRCC	1 cut(s)	66
BbsI	GAAGAC	1 cut(s)	350
Bbv12I	GWGCWC	1 cut(s)	548
BbvCI	CCTCAGC	1 cut(s)	665
BbvI	GCAGC	2 cut(s)	34, 656
BccI	CCATC	4 cut(s)	108, 150, 279, 555
BceAI	ACGGC	2 cut(s)	482, 550
BciT130I	CCWGG	1 cut(s)	482
BciVI	GTATCC	1 cut(s)	93
BcoDI	GTCTC	2 cut(s)	101, 245
BfuI	GTATCC	1 cut(s)	93
BisI	GCNGC	4 cut(s)	23, 65, 334, 670
BlsI	GCNGC	4 cut(s)	24, 66, 335, 671
Bme1390I	CCNGG	1 cut(s)	482
BmiI	GGNNCC	1 cut(s)	68
BmrFI	CCNGG	1 cut(s)	482
BmsI	GCATC	7 cut(s)	19, 34, 82, 177, 199, 444, 681
BpiI	GAAGAC	1 cut(s)	350
BpmI	CTGGAG	2 cut(s)	164, 524
Bpu10I	CCTNAGC	1 cut(s)	665
BsaXI	ACNNNNNCTCC	6 cut(s)	39, 69, 252, 282, 497, 527
Bsc4I	CCNNNNNNNGG	3 cut(s)	60, 103, 274
Bse1I	ACTGG	1 cut(s)	507
Bse21I	CCTNAGG	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	482
BseGI	GGATG	3 cut(s)	73, 202, 637
BseLI	CCNNNNNNNGG	3 cut(s)	60, 103, 274
BseMII	CTCAG	4 cut(s)	295, 416, 561, 679
BseNI	ACTGG	1 cut(s)	507
BseRI	GAGGAG	6 cut(s)	47, 107, 164, 167, 233, 521
BseXI	GCAGC	2 cut(s)	34, 656
BseYI	CCCAGC	1 cut(s)	6
BshFI	GGCC	1 cut(s)	565
BshNI	GGYRCC	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	548
BsiSI	CCGG	1 cut(s)	61
BslI	CCNNNNNNNGG	3 cut(s)	60, 103, 274
BsmAI	GTCTC	2 cut(s)	101, 245
BsnI	GGCC	1 cut(s)	565
Bsp1286I	GDGCHC	1 cut(s)	548
BspANI	GGCC	1 cut(s)	565
BspCNI	CTCAG	4 cut(s)	294, 415, 560, 678
BspLI	GGNNCC	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	507
Bst2UI	CCWGG	1 cut(s)	482
Bst4CI	ACNGT	1 cut(s)	258
Bst6I	CTCTTC	1 cut(s)	583
BstC8I	GCNNGC	2 cut(s)	409, 413
BstDEI	CTNAG	6 cut(s)	281, 402, 547, 665, 755, 761
BstF5I	GGATG	3 cut(s)	73, 202, 637
BstMAI	GTCTC	2 cut(s)	101, 245
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstNI	CCWGG	1 cut(s)	482
BstSCI	CCNGG	1 cut(s)	480
BstV1I	GCAGC	2 cut(s)	34, 656
BstV2I	GAAGAC	1 cut(s)	350
Bsu36I	CCTNAGG	1 cut(s)	402
BsuI	GTATCC	1 cut(s)	93
BsuRI	GGCC	1 cut(s)	565
BtsCI	GGATG	3 cut(s)	73, 202, 637
BtsIMutI	CAGTG	2 cut(s)	254, 500
Cac8I	GCNNGC	2 cut(s)	409, 413
CaiI	CAGNNNCTG	1 cut(s)	394
CviAII	CATG	1 cut(s)	618
DdeI	CTNAG	6 cut(s)	281, 402, 547, 665, 755, 761
EaeI	YGGCCR	1 cut(s)	563
Eam1104I	CTCTTC	1 cut(s)	583
EarI	CTCTTC	1 cut(s)	583
EciI	GGCGGA	2 cut(s)	281, 362
Eco57I	CTGAAG	1 cut(s)	323
Eco81I	CCTNAGG	1 cut(s)	402
EcoRI	GAATTC	1 cut(s)	645
EcoRII	CCWGG	1 cut(s)	480
EcoT22I	ATGCAT	1 cut(s)	192
FaeI	CATG	1 cut(s)	621
FaiI	YATR	1 cut(s)	619
FatI	CATG	1 cut(s)	617
Fnu4HI	GCNGC	4 cut(s)	23, 65, 334, 670
FokI	GGATG	3 cut(s)	60, 189, 624
Fsp4HI	GCNGC	4 cut(s)	23, 65, 334, 670
GluI	GCNGC	4 cut(s)	23, 65, 334, 670
GsaI	CCCAGC	1 cut(s)	10
GsuI	CTGGAG	2 cut(s)	164, 524
HaeIII	GGCC	1 cut(s)	565
HapII	CCGG	1 cut(s)	61
Hin1II	CATG	1 cut(s)	621
HincII	GTYRAC	2 cut(s)	446, 498
HindII	GTYRAC	2 cut(s)	446, 498
HinfI	GANTC	2 cut(s)	109, 606
HpaI	GTTAAC	1 cut(s)	498
HpaII	CCGG	1 cut(s)	61
HphI	GGTGA	6 cut(s)	5, 20, 146, 185, 320, 567
Hpy166II	GTNNAC	5 cut(s)	323, 446, 498, 575, 654
Hpy188I	TCNGA	3 cut(s)	147, 693, 720
Hpy188III	TCNNGA	2 cut(s)	104, 420
Hpy8I	GTNNAC	5 cut(s)	323, 446, 498, 575, 654
Hpy99I	CGWCG	1 cut(s)	357
HpyAV	CCTTC	3 cut(s)	209, 347, 632
HpyCH4III	ACNGT	1 cut(s)	258
HpyCH4V	TGCA	3 cut(s)	190, 439, 672
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
HpyF3I	CTNAG	6 cut(s)	281, 402, 547, 665, 755, 761
Hsp92II	CATG	1 cut(s)	621
KspAI	GTTAAC	1 cut(s)	498
LmnI	GCTCC	5 cut(s)	294, 375, 396, 402, 508
Lsp1109I	GCAGC	2 cut(s)	34, 656
LweI	GCATC	7 cut(s)	19, 34, 82, 177, 199, 444, 681
MaeIII	GTNAC	2 cut(s)	258, 462
MboII	GAAGA	5 cut(s)	350, 594, 597, 600, 667
MfeI	CAATTG	1 cut(s)	518
MhlI	GDGCHC	1 cut(s)	548
MluCI	AATT	3 cut(s)	381, 518, 645
MlyI	GAGTC	1 cut(s)	103
MmeI	TCCRAC	1 cut(s)	64
Mph1103I	ATGCAT	1 cut(s)	192
MroXI	GAANNNNTTC	2 cut(s)	698, 725
MseI	TTAA	1 cut(s)	497
MspA1I	CMGCKG	3 cut(s)	184, 301, 669
MspI	CCGG	1 cut(s)	61
MspR9I	CCNGG	1 cut(s)	482
MunI	CAATTG	1 cut(s)	518
MvaI	CCWGG	1 cut(s)	482
MwoI	GCNNNNNNNGC	1 cut(s)	70
NlaIII	CATG	1 cut(s)	621
NlaIV	GGNNCC	1 cut(s)	68
NsiI	ATGCAT	1 cut(s)	192
PdmI	GAANNNNTTC	2 cut(s)	698, 725
PfeI	GAWTC	1 cut(s)	606
PkrI	GCNGC	4 cut(s)	24, 66, 335, 671
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
Psp6I	CCWGG	1 cut(s)	480
PspFI	CCCAGC	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	480
PspN4I	GGNNCC	1 cut(s)	68
PstNI	CAGNNNCTG	1 cut(s)	394
PvuII	CAGCTG	3 cut(s)	184, 301, 669
SaqAI	TTAA	1 cut(s)	497
SatI	GCNGC	4 cut(s)	23, 65, 334, 670
SchI	GAGTC	1 cut(s)	103
ScrFI	CCNGG	1 cut(s)	482
SduI	GDGCHC	1 cut(s)	548
SfaNI	GCATC	7 cut(s)	19, 34, 82, 177, 199, 444, 681
Sse9I	AATT	3 cut(s)	381, 518, 645
StyD4I	CCNGG	1 cut(s)	480
TaaI	ACNGT	1 cut(s)	258
TaqI	TCGA	1 cut(s)	604
TasI	AATT	3 cut(s)	381, 518, 645
TauI	GCSGC	2 cut(s)	67, 336
TfiI	GAWTC	1 cut(s)	606
Tru1I	TTAA	1 cut(s)	497
Tru9I	TTAA	1 cut(s)	497
TscAI	CASTG	2 cut(s)	261, 507
TseI	GCWGC	2 cut(s)	22, 669
TspDTI	ATGAA	3 cut(s)	191, 374, 626
TspRI	CASTG	2 cut(s)	261, 507
XapI	RAATTY	1 cut(s)	645
XmnI	GAANNNNTTC	2 cut(s)	698, 725
Zsp2I	ATGCAT	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.