Rmu_ssc0000338.1_g000004
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000338.1
N/A
Physical Location & Seq
Forward (+)
23322 .. 23735
414 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 327 bp
atgagtggtcctttgtctccaatatcacttcctgcaccaaagcaactcaaattcacaccaggaatagtaagcagttcagttcaggagtcggcaacatttctgaaccagacacgaaagctggtaccagttgggcaactgtcaatgaagaaattagcaacagtggggcaagctgggaaactttggagatggaagagaagtcaccatcagtggctgctacagtttaagtggaagtggcagaagccttggaaactctcagaatggatcaagcacagtgatgagacactaattagatcaaggcctcgcccccaggctcagatagtcagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000022 GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000819 GO:0000910 GO:0002376 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003676 GO:0003677 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0005876 GO:0006355 GO:0006810 GO:0006890 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0008088 GO:0008089 GO:0008150 GO:0008574 GO:0009664 GO:0009832 GO:0009889 GO:0009891 GO:0009893 GO:0009937 GO:0009966 GO:0009987 GO:0010215 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010970 GO:0015630 GO:0016043 GO:0016192 GO:0016363 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019882 GO:0019884 GO:0019886 GO:0022402 GO:0022607 GO:0023051 GO:0030198 GO:0030496 GO:0030705 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0042127 GO:0042546 GO:0042623 GO:0043062 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044421 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045171 GO:0045229 GO:0045893 GO:0045935 GO:0046907 GO:0048002 GO:0048193 GO:0048285 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051179 GO:0051225 GO:0051231 GO:0051234 GO:0051252 GO:0051254 GO:0051255 GO:0051256 GO:0051276 GO:0051301 GO:0051641 GO:0051649 GO:0060255 GO:0061640 GO:0065007 GO:0070013 GO:0070726 GO:0070925 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071840 GO:0080090 GO:0090307 GO:0097159 GO:0098813 GO:0098930 GO:0099080 GO:0099081 GO:0099111 GO:0099512 GO:0099513 GO:0140014 GO:1901363 GO:1902680 GO:1902850 GO:1903047 GO:1903506 GO:1903508 GO:1990939 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Kinesin

Protein Analysis

108

Amino Acids

12.55

Weight (kDa)

11.68

Isoelectric Point (pI)

53.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 121
AccB1I GGYRCC 1 cut(s) 121
AclWI GGATC 1 cut(s) 269
AcsI RAATTY 1 cut(s) 50
AfaI GTAC 1 cut(s) 123
AjnI CCWGG 2 cut(s) 58, 306
AluBI AGCT 2 cut(s) 118, 170
AluI AGCT 2 cut(s) 118, 170
Alw26I GTCTC 2 cut(s) 21, 272
AlwI GGATC 1 cut(s) 269
AlwNI CAGNNNCTG 1 cut(s) 211
AoxI GGCC 1 cut(s) 296
ApeKI GCWGC 1 cut(s) 211
ApoI RAATTY 1 cut(s) 50
Asp718I GGTACC 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 191
AvaII GGWCC 1 cut(s) 8
BanI GGYRCC 1 cut(s) 121
BbvI GCAGC 1 cut(s) 198
BccI CCATC 2 cut(s) 180, 210
BciT130I CCWGG 2 cut(s) 60, 308
BcoDI GTCTC 2 cut(s) 21, 272
BfmI CTRYAG 1 cut(s) 215
BisI GCNGC 1 cut(s) 212
BlsI GCNGC 1 cut(s) 213
Bme1390I CCNGG 2 cut(s) 60, 308
Bme18I GGWCC 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 8
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 2 cut(s) 60, 308
BsaJI CCNNGG 2 cut(s) 242, 306
Bse1I ACTGG 1 cut(s) 125
BseBI CCWGG 2 cut(s) 60, 308
BseDI CCNNGG 2 cut(s) 242, 306
BseMII CTCAG 2 cut(s) 267, 326
BseNI ACTGG 1 cut(s) 125
BseXI GCAGC 1 cut(s) 198
BseYI CCCAGC 1 cut(s) 170
BsgI GTGCAG 1 cut(s) 18
BshFI GGCC 1 cut(s) 298
BshNI GGYRCC 1 cut(s) 121
BsmAI GTCTC 2 cut(s) 21, 272
BsnI GGCC 1 cut(s) 298
Bsp143I GATC 2 cut(s) 261, 290
BspANI GGCC 1 cut(s) 298
BspCNI CTCAG 2 cut(s) 266, 325
BspLI GGNNCC 1 cut(s) 123
BspPI GGATC 1 cut(s) 269
BspT107I GGYRCC 1 cut(s) 121
BsrI ACTGG 1 cut(s) 125
BssECI CCNNGG 2 cut(s) 242, 306
BssMI GATC 2 cut(s) 261, 290
BssT1I CCWWGG 1 cut(s) 242
Bst2UI CCWGG 2 cut(s) 60, 308
Bst4CI ACNGT 4 cut(s) 138, 160, 219, 272
Bst6I CTCTTC 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 2 cut(s) 253, 312
BstKTI GATC 2 cut(s) 264, 293
BstMAI GTCTC 2 cut(s) 21, 272
BstMBI GATC 2 cut(s) 261, 290
BstNI CCWGG 2 cut(s) 60, 308
BstSCI CCNGG 2 cut(s) 58, 306
BstSFI CTRYAG 1 cut(s) 215
BstV1I GCAGC 1 cut(s) 198
BsuRI GGCC 1 cut(s) 298
BtsIMutI CAGTG 3 cut(s) 165, 212, 277
Cac8I GCNNGC 1 cut(s) 168
CaiI CAGNNNCTG 1 cut(s) 211
Cfr13I GGNCC 1 cut(s) 8
Csp6I GTAC 1 cut(s) 122
CviJI RGCY 6 cut(s) 118, 170, 211, 241, 298, 311
CviKI_1 RGCY 6 cut(s) 118, 170, 211, 241, 298, 311
CviQI GTAC 1 cut(s) 122
DdeI CTNAG 2 cut(s) 253, 312
DpnI GATC 2 cut(s) 263, 292
DpnII GATC 2 cut(s) 261, 290
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 242
Eco147I AGGCCT 1 cut(s) 298
Eco47I GGWCC 1 cut(s) 8
EcoRII CCWGG 2 cut(s) 58, 306
EcoT14I CCWWGG 1 cut(s) 242
ErhI CCWWGG 1 cut(s) 242
Fnu4HI GCNGC 1 cut(s) 212
Fsp4HI GCNGC 1 cut(s) 212
GluI GCNGC 1 cut(s) 212
GsaI CCCAGC 1 cut(s) 174
HaeIII GGCC 1 cut(s) 298
HinfI GANTC 1 cut(s) 86
HphI GGTGA 1 cut(s) 191
Hpy188I TCNGA 4 cut(s) 102, 256, 315, 323
Hpy188III TCNNGA 1 cut(s) 83
HpyCH4III ACNGT 4 cut(s) 138, 160, 219, 272
HpyCH4V TGCA 1 cut(s) 35
HpyF3I CTNAG 2 cut(s) 253, 312
KpnI GGTACC 1 cut(s) 125
Kzo9I GATC 2 cut(s) 261, 290
Lsp1109I GCAGC 1 cut(s) 198
MaeIII GTNAC 1 cut(s) 197
MalI GATC 2 cut(s) 263, 292
MboI GATC 2 cut(s) 261, 290
MboII GAAGA 2 cut(s) 157, 202
MluCI AATT 3 cut(s) 50, 149, 285
MlyI GAGTC 1 cut(s) 95
MnlI CCTC 1 cut(s) 309
MseI TTAA 1 cut(s) 222
MslI CAYNNNNRTG 1 cut(s) 273
MspR9I CCNGG 2 cut(s) 60, 308
MvaI CCWGG 2 cut(s) 60, 308
NdeII GATC 2 cut(s) 261, 290
NlaIV GGNNCC 1 cut(s) 123
NmuCI GTSAC 1 cut(s) 197
PceI AGGCCT 1 cut(s) 298
PkrI GCNGC 1 cut(s) 213
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
Psp6I CCWGG 2 cut(s) 58, 306
PspFI CCCAGC 1 cut(s) 170
PspGI CCWGG 2 cut(s) 58, 306
PspN4I GGNNCC 1 cut(s) 123
PspPI GGNCC 1 cut(s) 8
PstNI CAGNNNCTG 1 cut(s) 211
RsaI GTAC 1 cut(s) 123
RsaNI GTAC 1 cut(s) 122
RseI CAYNNNNRTG 1 cut(s) 273
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 1 cut(s) 212
Sau3AI GATC 2 cut(s) 261, 290
Sau96I GGNCC 1 cut(s) 8
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 2 cut(s) 60, 308
SetI ASST 2 cut(s) 120, 172
SfcI CTRYAG 1 cut(s) 215
SinI GGWCC 1 cut(s) 8
SmiMI CAYNNNNRTG 1 cut(s) 273
Sse9I AATT 3 cut(s) 50, 149, 285
SseBI AGGCCT 1 cut(s) 298
StuI AGGCCT 1 cut(s) 298
StyD4I CCNGG 2 cut(s) 58, 306
StyI CCWWGG 1 cut(s) 242
TaaI ACNGT 4 cut(s) 138, 160, 219, 272
TasI AATT 3 cut(s) 50, 149, 285
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 3 cut(s) 165, 212, 277
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 1 cut(s) 211
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 158
TspRI CASTG 3 cut(s) 165, 212, 277
VpaK11BI GGWCC 1 cut(s) 8
XapI RAATTY 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.