Rmu_ssc0000350.1_g000024

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000350.1
N/A
Physical Location & Seq
Forward (+)
146975 .. 148570
1596 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 378 bp
atgcatgatgaccggtggaatctgtgcgatgatcagtgtgatgactgctcggggttaatcctgcaagtcagggaaatcgtggctgaagctgaggtggcatctttgcagctttacggtaggaagctatctttgatgagtaacctgaacaaattggactttgctccattaggaacaactggctctgaatatcacaggtgggttcatgatgtcccccagcatctcaaggccgatggaatcctagatacaattctcgagcctagccaggacatgctaactattgagcaagctcaagctttggaagcaaatagagaagccttagaggcaaataaggcgaaagccatcatcctaatgactcgtcatatggatgattcgctctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

125

Amino Acids

14.09

Weight (kDa)

4.64

Isoelectric Point (pI)

58.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 105
AgeI ACCGGT 1 cut(s) 12
AjnI CCWGG 1 cut(s) 261
AluBI AGCT 5 cut(s) 89, 109, 124, 287, 293
AluI AGCT 5 cut(s) 89, 109, 124, 287, 293
Ama87I CYCGRG 2 cut(s) 49, 251
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 1 cut(s) 106
AsiGI ACCGGT 1 cut(s) 12
AvaI CYCGRG 2 cut(s) 49, 251
BbvCI CCTCAGC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 118
BccI CCATC 2 cut(s) 224, 347
BciT130I CCWGG 1 cut(s) 263
BclI TGATCA 1 cut(s) 31
BfaI CTAG 3 cut(s) 239, 258, 376
BglI GCCNNNNNGGC 1 cut(s) 320
BisI GCNGC 1 cut(s) 107
BlsI GCNGC 1 cut(s) 108
Bme1390I CCNGG 1 cut(s) 263
BmeT110I CYCGRG 2 cut(s) 49, 251
BmrFI CCNGG 1 cut(s) 263
BmsI GCATC 2 cut(s) 107, 226
Bpu10I CCTNAGC 1 cut(s) 90
BpuEI CTTGAG 2 cut(s) 206, 273
BsaWI WCCGGW 1 cut(s) 12
Bse118I RCCGGY 1 cut(s) 12
Bse1I ACTGG 1 cut(s) 181
BseBI CCWGG 1 cut(s) 263
BseGI GGATG 2 cut(s) 342, 370
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 181
BseXI GCAGC 1 cut(s) 118
BseYI CCCAGC 1 cut(s) 213
BshFI GGCC 1 cut(s) 227
BshTI ACCGGT 1 cut(s) 12
BsiHKCI CYCGRG 2 cut(s) 49, 251
BsiSI CCGG 1 cut(s) 13
BslFI GGGAC 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 194
BsnI GGCC 1 cut(s) 227
BsoBI CYCGRG 2 cut(s) 49, 251
Bsp143I GATC 1 cut(s) 31
BspANI GGCC 1 cut(s) 227
BspCNI CTCAG 1 cut(s) 82
BspHI TCATGA 1 cut(s) 202
BsrFI RCCGGY 1 cut(s) 12
BsrI ACTGG 1 cut(s) 181
BssAI RCCGGY 1 cut(s) 12
BssMI GATC 1 cut(s) 31
Bst2UI CCWGG 1 cut(s) 263
Bst4CI ACNGT 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 285
BstDEI CTNAG 2 cut(s) 90, 316
BstF5I GGATG 2 cut(s) 342, 370
BstKTI GATC 1 cut(s) 34
BstMBI GATC 1 cut(s) 31
BstMWI GCNNNNNNNGC 4 cut(s) 95, 299, 320, 329
BstNI CCWGG 1 cut(s) 263
BstNSI RCATGY 1 cut(s) 271
BstSCI CCNGG 1 cut(s) 261
BstV1I GCAGC 1 cut(s) 118
BsuRI GGCC 1 cut(s) 227
BtgZI GCGATG 1 cut(s) 42
BtsCI GGATG 2 cut(s) 342, 370
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 1 cut(s) 285
CciI TCATGA 1 cut(s) 202
Cfr10I RCCGGY 1 cut(s) 12
CspAI ACCGGT 1 cut(s) 12
CviAII CATG 3 cut(s) 5, 203, 268
DdeI CTNAG 2 cut(s) 90, 316
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
Eco57I CTGAAG 1 cut(s) 105
Eco88I CYCGRG 2 cut(s) 49, 251
EcoRII CCWGG 1 cut(s) 261
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 8, 206, 271
FaiI YATR 5 cut(s) 6, 204, 269, 360, 362
FaqI GGGAC 1 cut(s) 194
FatI CATG 3 cut(s) 4, 202, 267
FauNDI CATATG 1 cut(s) 360
FbaI TGATCA 1 cut(s) 31
Fnu4HI GCNGC 1 cut(s) 107
FokI GGATG 1 cut(s) 329
Fsp4HI GCNGC 1 cut(s) 107
FspBI CTAG 3 cut(s) 239, 258, 376
GluI GCNGC 1 cut(s) 107
GsaI CCCAGC 1 cut(s) 217
HaeIII GGCC 1 cut(s) 227
HapII CCGG 1 cut(s) 13
Hin1II CATG 3 cut(s) 8, 206, 271
HindIII AAGCTT 1 cut(s) 291
HinfI GANTC 4 cut(s) 19, 234, 352, 368
HpaII CCGG 1 cut(s) 13
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 2 cut(s) 203, 251
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4V TGCA 3 cut(s) 4, 64, 106
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 299, 320, 329
HpyF3I CTNAG 2 cut(s) 90, 316
Hsp92II CATG 3 cut(s) 8, 206, 271
Ksp22I TGATCA 1 cut(s) 31
Kzo9I GATC 1 cut(s) 31
LmnI GCTCC 1 cut(s) 166
LpnPI CCDG 9 cut(s) 26, 55, 74, 155, 162, 178, 227, 248, 275
Lsp1109I GCAGC 1 cut(s) 118
LweI GCATC 2 cut(s) 107, 226
MaeI CTAG 3 cut(s) 239, 258, 376
MaeIII GTNAC 1 cut(s) 137
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MluCI AATT 2 cut(s) 149, 246
MlyI GAGTC 1 cut(s) 346
MnlI CCTC 2 cut(s) 85, 313
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 56
MslI CAYNNNNRTG 2 cut(s) 347, 363
MspI CCGG 1 cut(s) 13
MspR9I CCNGG 1 cut(s) 263
MvaI CCWGG 1 cut(s) 263
MwoI GCNNNNNNNGC 4 cut(s) 95, 299, 320, 329
NdeI CATATG 1 cut(s) 360
NdeII GATC 1 cut(s) 31
NlaIII CATG 3 cut(s) 8, 206, 271
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 271
PaeR7I CTCGAG 1 cut(s) 251
PagI TCATGA 1 cut(s) 202
PfeI GAWTC 3 cut(s) 19, 234, 368
PinAI ACCGGT 1 cut(s) 12
PkrI GCNGC 1 cut(s) 108
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
Psp6I CCWGG 1 cut(s) 261
PspFI CCCAGC 1 cut(s) 213
PspGI CCWGG 1 cut(s) 261
RseI CAYNNNNRTG 2 cut(s) 347, 363
SaqAI TTAA 1 cut(s) 56
SatI GCNGC 1 cut(s) 107
Sau3AI GATC 1 cut(s) 31
SchI GAGTC 1 cut(s) 346
ScrFI CCNGG 1 cut(s) 263
SetI ASST 8 cut(s) 91, 96, 111, 126, 144, 197, 289, 295
SfaNI GCATC 2 cut(s) 107, 226
Sfr274I CTCGAG 1 cut(s) 251
SlaI CTCGAG 1 cut(s) 251
SmiMI CAYNNNNRTG 2 cut(s) 347, 363
SmlI CTYRAG 3 cut(s) 221, 251, 288
SmoI CTYRAG 3 cut(s) 221, 251, 288
Sse9I AATT 2 cut(s) 149, 246
SspMI CTAG 3 cut(s) 239, 258, 376
StyD4I CCNGG 1 cut(s) 261
TaaI ACNGT 1 cut(s) 116
TaqI TCGA 1 cut(s) 252
TasI AATT 2 cut(s) 149, 246
TfiI GAWTC 3 cut(s) 19, 234, 368
Tru1I TTAA 1 cut(s) 56
Tru9I TTAA 1 cut(s) 56
TscAI CASTG 1 cut(s) 41
TseI GCWGC 1 cut(s) 106
TspDTI ATGAA 1 cut(s) 191
TspRI CASTG 1 cut(s) 41
XceI RCATGY 1 cut(s) 271
XhoI CTCGAG 1 cut(s) 251
XspI CTAG 3 cut(s) 239, 258, 376
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.