Rmu_ssc0000363.1_g000001

Protein SIEVE ELEMENT OCCLUSION

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000363.1
N/A
Physical Location & Seq
Forward (+)
580 .. 1273
694 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 381 bp
atggcccttgtacctcataatcgggcccccaacaccattcgtagaggagacaattatcgtcctcctccgcctagtagagatggccgtcctcaatttgaaacagatgacagttcattgatcagccaagttctgttcatcgatgaatctcacgatgaccgtccctatgatcctactcctatttctttgaaacatattctacaagccgcagagattattattctttcccatgtcaacacccctgatatccattccaatgtttccggatcagcagaaactgcagatgcacatgaggatgccttggaacatcatgcgagcccgattaccctccatgaaagctacggtgttccaagcagcatctttattgcaatttcctgcaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0008150 GO:0009888 GO:0010087 GO:0010088 GO:0032502 GO:0042802 GO:0042803 GO:0043621 GO:0046983 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SEO_C SEO_N

Protein Analysis

126

Amino Acids

13.88

Weight (kDa)

5.28

Isoelectric Point (pI)

58.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 260
AciI CCGC 2 cut(s) 68, 204
AclWI GGATC 2 cut(s) 161, 271
AcoI YGGCCR 1 cut(s) 82
AfaI GTAC 1 cut(s) 12
AgsI TTSAA 2 cut(s) 98, 187
AluBI AGCT 1 cut(s) 336
AluI AGCT 1 cut(s) 336
Alw26I GTCTC 1 cut(s) 42
AlwI GGATC 2 cut(s) 161, 271
AlwNI CAGNNNCTG 1 cut(s) 275
Aor13HI TCCGGA 1 cut(s) 260
AoxI GGCC 3 cut(s) 3, 24, 82
ApaI GGGCCC 1 cut(s) 28
ApeKI GCWGC 1 cut(s) 351
AspS9I GGNCC 3 cut(s) 4, 24, 25
BaeGI GKGCMC 1 cut(s) 28
BanII GRGCYC 2 cut(s) 28, 317
BbvI GCAGC 1 cut(s) 363
BccI CCATC 1 cut(s) 74
BceAI ACGGC 1 cut(s) 69
BclI TGATCA 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 1 cut(s) 72
BfmI CTRYAG 1 cut(s) 276
BisI GCNGC 2 cut(s) 204, 352
BlsI GCNGC 2 cut(s) 205, 353
BmgT120I GGNCC 3 cut(s) 4, 24, 25
BmiI GGNNCC 2 cut(s) 26, 27
BmsI GCATC 3 cut(s) 271, 283, 363
Bsa29I ATCGAT 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 297
BsaWI WCCGGW 1 cut(s) 260
BseAI TCCGGA 1 cut(s) 260
BseCI ATCGAT 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 1 cut(s) 298
BseRI GAGGAG 2 cut(s) 54, 60
BseSI GKGCMC 1 cut(s) 28
BseXI GCAGC 1 cut(s) 363
BshFI GGCC 3 cut(s) 5, 26, 84
BshVI ATCGAT 1 cut(s) 138
BsiSI CCGG 1 cut(s) 261
BslFI GGGAC 1 cut(s) 144
BsmAI GTCTC 1 cut(s) 42
BsmFI GGGAC 1 cut(s) 144
BsnI GGCC 3 cut(s) 5, 26, 84
Bsp120I GGGCCC 1 cut(s) 24
Bsp1286I GDGCHC 2 cut(s) 28, 317
Bsp13I TCCGGA 1 cut(s) 260
Bsp143I GATC 3 cut(s) 117, 166, 263
BspACI CCGC 2 cut(s) 68, 204
BspANI GGCC 3 cut(s) 5, 26, 84
BspDI ATCGAT 1 cut(s) 138
BspEI TCCGGA 1 cut(s) 260
BspLI GGNNCC 2 cut(s) 26, 27
BspMAI CTGCAG 1 cut(s) 280
BspPI GGATC 2 cut(s) 161, 271
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 3 cut(s) 117, 166, 263
BssT1I CCWWGG 1 cut(s) 297
Bst4CI ACNGT 3 cut(s) 110, 158, 341
BstAPI GCANNNNNTGC 1 cut(s) 275
BstC8I GCNNGC 1 cut(s) 313
BstF5I GGATG 1 cut(s) 298
BstKTI GATC 3 cut(s) 120, 169, 266
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 3 cut(s) 117, 166, 263
BstMWI GCNNNNNNNGC 1 cut(s) 275
BstSFI CTRYAG 1 cut(s) 276
BstSLI GKGCMC 1 cut(s) 28
BstV1I GCAGC 1 cut(s) 363
Bsu15I ATCGAT 1 cut(s) 138
BsuRI GGCC 3 cut(s) 5, 26, 84
BsuTUI ATCGAT 1 cut(s) 138
BtsCI GGATG 1 cut(s) 298
Cac8I GCNNGC 1 cut(s) 313
CaiI CAGNNNCTG 1 cut(s) 275
Cfr13I GGNCC 3 cut(s) 4, 24, 25
ClaI ATCGAT 1 cut(s) 138
Csp6I GTAC 1 cut(s) 11
CviAII CATG 4 cut(s) 227, 287, 308, 329
CviJI RGCY 7 cut(s) 5, 26, 84, 123, 203, 315, 336
CviKI_1 RGCY 7 cut(s) 5, 26, 84, 123, 203, 315, 336
CviQI GTAC 1 cut(s) 11
DpnI GATC 3 cut(s) 119, 168, 265
DpnII GATC 3 cut(s) 117, 166, 263
EaeI YGGCCR 1 cut(s) 82
EciI GGCGGA 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 297
Eco24I GRGCYC 2 cut(s) 28, 317
Eco32I GATATC 1 cut(s) 244
EcoO109I RGGNCCY 1 cut(s) 25
EcoRV GATATC 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 297
EcoT38I GRGCYC 2 cut(s) 28, 317
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 4 cut(s) 230, 290, 311, 332
FaiI YATR 7 cut(s) 18, 165, 192, 228, 288, 309, 330
FaqI GGGAC 1 cut(s) 144
FatI CATG 4 cut(s) 226, 286, 307, 328
FbaI TGATCA 1 cut(s) 117
Fnu4HI GCNGC 2 cut(s) 204, 352
FokI GGATG 1 cut(s) 305
FriOI GRGCYC 2 cut(s) 28, 317
Fsp4HI GCNGC 2 cut(s) 204, 352
FspBI CTAG 1 cut(s) 72
GluI GCNGC 2 cut(s) 204, 352
HaeIII GGCC 3 cut(s) 5, 26, 84
HapII CCGG 1 cut(s) 261
Hin1II CATG 4 cut(s) 230, 290, 311, 332
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 1 cut(s) 143
HpaII CCGG 1 cut(s) 261
Hpy166II GTNNAC 1 cut(s) 232
Hpy188III TCNNGA 2 cut(s) 149, 261
Hpy8I GTNNAC 1 cut(s) 232
HpyCH4III ACNGT 3 cut(s) 110, 158, 341
HpyCH4V TGCA 4 cut(s) 278, 284, 365, 375
HpyF10VI GCNNNNNNNGC 1 cut(s) 275
Hsp92II CATG 4 cut(s) 230, 290, 311, 332
Kpn2I TCCGGA 1 cut(s) 260
Ksp22I TGATCA 1 cut(s) 117
Kzo9I GATC 3 cut(s) 117, 166, 263
LpnPI CCDG 2 cut(s) 252, 274
Lsp1109I GCAGC 1 cut(s) 363
LweI GCATC 3 cut(s) 271, 283, 363
MaeI CTAG 1 cut(s) 72
MalI GATC 3 cut(s) 119, 168, 265
MboI GATC 3 cut(s) 117, 166, 263
MhlI GDGCHC 2 cut(s) 28, 317
MluCI AATT 3 cut(s) 52, 92, 366
MnlI CCTC 7 cut(s) 24, 38, 72, 75, 99, 283, 335
MroI TCCGGA 1 cut(s) 260
MslI CAYNNNNRTG 2 cut(s) 252, 291
MspI CCGG 1 cut(s) 261
MwoI GCNNNNNNNGC 1 cut(s) 275
NdeII GATC 3 cut(s) 117, 166, 263
NlaIII CATG 4 cut(s) 230, 290, 311, 332
NlaIV GGNNCC 2 cut(s) 26, 27
PfeI GAWTC 1 cut(s) 143
PkrI GCNGC 2 cut(s) 205, 353
PspN4I GGNNCC 2 cut(s) 26, 27
PspOMI GGGCCC 1 cut(s) 24
PspPI GGNCC 3 cut(s) 4, 24, 25
PstI CTGCAG 1 cut(s) 280
PstNI CAGNNNCTG 1 cut(s) 275
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
RseI CAYNNNNRTG 2 cut(s) 252, 291
SatI GCNGC 2 cut(s) 204, 352
Sau3AI GATC 3 cut(s) 117, 166, 263
Sau96I GGNCC 3 cut(s) 4, 24, 25
SduI GDGCHC 2 cut(s) 28, 317
SetI ASST 2 cut(s) 16, 338
SfaNI GCATC 3 cut(s) 271, 283, 363
SfcI CTRYAG 1 cut(s) 276
SmiMI CAYNNNNRTG 2 cut(s) 252, 291
Sse9I AATT 3 cut(s) 52, 92, 366
SsiI CCGC 2 cut(s) 68, 204
SspMI CTAG 1 cut(s) 72
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 3 cut(s) 110, 158, 341
TaqI TCGA 1 cut(s) 138
TasI AATT 3 cut(s) 52, 92, 366
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 1 cut(s) 143
TseI GCWGC 1 cut(s) 351
TspDTI ATGAA 4 cut(s) 102, 124, 156, 345
XspI CTAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.