Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000371.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

50420 .. 51290

Gene Structure 871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

atggctgacaagtacggaccgctcttcactatcaagcttggtgtgcaccgagctcttgttgtaagcagttgggatgtggctaaagaatgtctcaccactaatgataaagcttttgccaaccgcccgaaagctttaggcccggagattatggggtacgactatgccagtgcgaaagataactatgctgcacatcctctccaaccacaagttggagttgctcaagcacgtccgagaatcggaggtgaaggtacgaaacatatatttgatatgtgggagcgaaacaaaggtgtctcaaataaggtgctggtggacatgaagaggtggtttggagacttaacctcaaagatcatgctcaggatggttgttggaaagcaatttcaatttcttgggtctaacttggcacaagagaatgaagagaatgaaagctttcgaaaggcgttgagggaattttttagattgggtggcgaatttgtaatctcagatgcagttccatttcttaggtggttggatttgggaggttacgagaaagccatgaagaagacagctaaagaactcgatggtgcgcttcaaaaatggttagaagagcataagcacaagagaagtagtaattctttgcaacatgattgtgagcatgacttcatggatatgatgcttaccgtccttgatgatgatagtagaggagtgtgctggttcaattactgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0042221 GO:0044550 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071241 GO:0071248 GO:0071281

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00980 ko00981 ko01100 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00980 map00981 map01100 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

234

Amino Acids

26.76

Weight (kDa)

7.69

Isoelectric Point (pI)

47.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 219	2.5e-13	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	209
AccBSI	CCGCTC	1 cut(s)	22
AciI	CCGC	2 cut(s)	20, 121
AcsI	RAATTY	2 cut(s)	446, 467
AfaI	GTAC	3 cut(s)	14, 155, 250
AfiI	CCNNNNNNNGG	2 cut(s)	209, 236
AgsI	TTSAA	3 cut(s)	380, 569, 694
AjiI	CACGTC	1 cut(s)	227
AluBI	AGCT	6 cut(s)	37, 53, 110, 131, 426, 545
AluI	AGCT	6 cut(s)	37, 53, 110, 131, 426, 545
Alw21I	GWGCWC	2 cut(s)	48, 55
Alw26I	GTCTC	3 cut(s)	95, 295, 324
Alw44I	GTGCAC	1 cut(s)	44
AoxI	GGCC	1 cut(s)	136
ApaLI	GTGCAC	1 cut(s)	44
ApeKI	GCWGC	1 cut(s)	185
ApoI	RAATTY	2 cut(s)	446, 467
Asp700I	GAANNNNTTC	1 cut(s)	426
AspLEI	GCGC	1 cut(s)	565
AspS9I	GGNCC	2 cut(s)	17, 137
AsuC2I	CCSGG	1 cut(s)	140
AsuHPI	GGTGA	2 cut(s)	85, 254
AsuII	TTCGAA	1 cut(s)	430
AvaII	GGWCC	1 cut(s)	17
BaeGI	GKGCMC	1 cut(s)	48
BanII	GRGCYC	1 cut(s)	55
BbsI	GAAGAC	1 cut(s)	545
Bbv12I	GWGCWC	2 cut(s)	48, 55
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	2 cut(s)	352, 551
BcnI	CCSGG	1 cut(s)	140
BcoDI	GTCTC	3 cut(s)	95, 295, 324
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
Bme1390I	CCNGG	1 cut(s)	140
Bme18I	GGWCC	1 cut(s)	17
BmgBI	CACGTC	1 cut(s)	227
BmgT120I	GGNCC	2 cut(s)	17, 137
BmrFI	CCNGG	1 cut(s)	140
BmsI	GCATC	2 cut(s)	472, 639
BpiI	GAAGAC	1 cut(s)	545
Bpu10I	CCTNAGC	1 cut(s)	353
Bpu14I	TTCGAA	1 cut(s)	430
BpuEI	CTTGAG	1 cut(s)	204
BpuMI	CCSGG	1 cut(s)	140
BsaXI	ACNNNNNCTCC	2 cut(s)	180, 210
Bsc4I	CCNNNNNNNGG	2 cut(s)	209, 236
Bse1I	ACTGG	1 cut(s)	165
BseGI	GGATG	3 cut(s)	79, 190, 363
BseLI	CCNNNNNNNGG	2 cut(s)	209, 236
BseMII	CTCAG	2 cut(s)	367, 492
BseNI	ACTGG	1 cut(s)	165
BseRI	GAGGAG	1 cut(s)	693
BseSI	GKGCMC	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	172
BsgI	GTGCAG	1 cut(s)	171
BshFI	GGCC	1 cut(s)	138
BsiHKAI	GWGCWC	2 cut(s)	48, 55
BsiSI	CCGG	1 cut(s)	140
BslI	CCNNNNNNNGG	2 cut(s)	209, 236
BsmAI	GTCTC	3 cut(s)	95, 295, 324
BsnI	GGCC	1 cut(s)	138
Bsp119I	TTCGAA	1 cut(s)	430
Bsp1286I	GDGCHC	2 cut(s)	48, 55
Bsp143I	GATC	1 cut(s)	345
BspACI	CCGC	2 cut(s)	20, 121
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	2 cut(s)	366, 491
BspQI	GCTCTTC	2 cut(s)	29, 576
BspT104I	TTCGAA	1 cut(s)	430
BsrBI	CCGCTC	1 cut(s)	22
BsrI	ACTGG	1 cut(s)	165
BssMI	GATC	1 cut(s)	345
Bst4CI	ACNGT	1 cut(s)	658
Bst6I	CTCTTC	4 cut(s)	29, 311, 408, 576
BstBI	TTCGAA	1 cut(s)	430
BstDEI	CTNAG	3 cut(s)	353, 478, 497
BstF5I	GGATG	3 cut(s)	79, 190, 363
BstHHI	GCGC	1 cut(s)	565
BstKTI	GATC	1 cut(s)	348
BstMAI	GTCTC	3 cut(s)	95, 295, 324
BstMBI	GATC	1 cut(s)	345
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	138
BstSLI	GKGCMC	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	172
BstV2I	GAAGAC	1 cut(s)	545
BsuRI	GGCC	1 cut(s)	138
BtrI	CACGTC	1 cut(s)	227
BtsCI	GGATG	3 cut(s)	79, 190, 363
BtsIMutI	CAGTG	1 cut(s)	172
CfoI	GCGC	1 cut(s)	565
Cfr13I	GGNCC	2 cut(s)	17, 137
CpoI	CGGWCCG	1 cut(s)	17
Csp6I	GTAC	3 cut(s)	13, 154, 249
CspI	CGGWCCG	1 cut(s)	17
CviAII	CATG	6 cut(s)	313, 349, 532, 620, 632, 640
CviQI	GTAC	3 cut(s)	13, 154, 249
DdeI	CTNAG	3 cut(s)	353, 478, 497
DpnI	GATC	1 cut(s)	347
DpnII	GATC	1 cut(s)	345
Eam1104I	CTCTTC	4 cut(s)	29, 311, 408, 576
EarI	CTCTTC	4 cut(s)	29, 311, 408, 576
Ecl136II	GAGCTC	1 cut(s)	53
Eco24I	GRGCYC	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	17
Eco53kI	GAGCTC	1 cut(s)	53
EcoICRI	GAGCTC	1 cut(s)	53
EcoT38I	GRGCYC	1 cut(s)	55
FaeI	CATG	6 cut(s)	316, 352, 535, 623, 635, 643
FatI	CATG	6 cut(s)	312, 348, 531, 619, 631, 639
Fnu4HI	GCNGC	1 cut(s)	186
FokI	GGATG	3 cut(s)	86, 177, 370
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	1 cut(s)	186
GlaI	GCGC	1 cut(s)	564
GluI	GCNGC	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	1 cut(s)	140
HhaI	GCGC	1 cut(s)	565
Hin1II	CATG	6 cut(s)	316, 352, 535, 623, 635, 643
Hin6I	GCGC	1 cut(s)	563
HinP1I	GCGC	1 cut(s)	563
HindIII	AAGCTT	4 cut(s)	35, 108, 129, 424
HinfI	GANTC	1 cut(s)	234
HpaII	CCGG	1 cut(s)	140
HphI	GGTGA	2 cut(s)	85, 254
Hpy166II	GTNNAC	2 cut(s)	46, 310
Hpy188I	TCNGA	3 cut(s)	231, 239, 481
Hpy188III	TCNNGA	1 cut(s)	355
Hpy8I	GTNNAC	2 cut(s)	46, 310
HpyAV	CCTTC	1 cut(s)	239
HpyCH4III	ACNGT	1 cut(s)	658
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	4 cut(s)	46, 188, 485, 616
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
HpyF3I	CTNAG	3 cut(s)	353, 478, 497
HpySE526I	ACGT	1 cut(s)	226
Hsp92II	CATG	6 cut(s)	316, 352, 535, 623, 635, 643
HspAI	GCGC	1 cut(s)	563
Kzo9I	GATC	1 cut(s)	345
LguI	GCTCTTC	2 cut(s)	29, 576
LmnI	GCTCC	1 cut(s)	274
LpnPI	CCDG	5 cut(s)	153, 178, 290, 340, 673
Lsp1109I	GCAGC	1 cut(s)	172
LweI	GCATC	2 cut(s)	472, 639
MaeII	ACGT	1 cut(s)	226
MaeIII	GTNAC	1 cut(s)	518
MalI	GATC	1 cut(s)	347
MbiI	CCGCTC	1 cut(s)	22
MboI	GATC	1 cut(s)	345
MboII	GAAGA	6 cut(s)	16, 328, 425, 547, 550, 593
MhlI	GDGCHC	2 cut(s)	48, 55
MluCI	AATT	6 cut(s)	374, 380, 446, 467, 607, 694
MmeI	TCCRAC	4 cut(s)	190, 223, 346, 486
MnlI	CCTC	7 cut(s)	204, 233, 312, 349, 435, 509, 671
MroXI	GAANNNNTTC	1 cut(s)	426
MseI	TTAA	1 cut(s)	335
MslI	CAYNNNNRTG	2 cut(s)	624, 644
MspI	CCGG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	140
MwoI	GCNNNNNNNGC	1 cut(s)	43
NciI	CCSGG	1 cut(s)	140
NdeII	GATC	1 cut(s)	345
NlaIII	CATG	6 cut(s)	316, 352, 535, 623, 635, 643
NspV	TTCGAA	1 cut(s)	430
PciSI	GCTCTTC	2 cut(s)	29, 576
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	1 cut(s)	234
PflMI	CCANNNNNTGG	1 cut(s)	209
PkrI	GCNGC	1 cut(s)	187
Psp124BI	GAGCTC	1 cut(s)	55
PspPI	GGNCC	2 cut(s)	17, 137
RsaI	GTAC	3 cut(s)	14, 155, 250
RsaNI	GTAC	3 cut(s)	13, 154, 249
RseI	CAYNNNNRTG	2 cut(s)	624, 644
Rsr2I	CGGWCCG	1 cut(s)	17
RsrII	CGGWCCG	1 cut(s)	17
SacI	GAGCTC	1 cut(s)	55
SapI	GCTCTTC	2 cut(s)	29, 576
SaqAI	TTAA	1 cut(s)	335
SatI	GCNGC	1 cut(s)	186
Sau3AI	GATC	1 cut(s)	345
Sau96I	GGNCC	2 cut(s)	17, 137
ScrFI	CCNGG	1 cut(s)	140
SduI	GDGCHC	2 cut(s)	48, 55
SfaNI	GCATC	2 cut(s)	472, 639
SfuI	TTCGAA	1 cut(s)	430
SinI	GGWCC	1 cut(s)	17
SmiMI	CAYNNNNRTG	2 cut(s)	624, 644
SmlI	CTYRAG	1 cut(s)	219
SmoI	CTYRAG	1 cut(s)	219
Sse9I	AATT	6 cut(s)	374, 380, 446, 467, 607, 694
SsiI	CCGC	2 cut(s)	20, 121
SstI	GAGCTC	1 cut(s)	55
StyD4I	CCNGG	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	658
TaiI	ACGT	1 cut(s)	229
TaqI	TCGA	2 cut(s)	430, 555
TasI	AATT	6 cut(s)	374, 380, 446, 467, 607, 694
TfiI	GAWTC	1 cut(s)	234
Tru1I	TTAA	1 cut(s)	335
Tru9I	TTAA	1 cut(s)	335
TscAI	CASTG	1 cut(s)	172
TseI	GCWGC	1 cut(s)	185
TspDTI	ATGAA	5 cut(s)	329, 426, 435, 548, 628
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	172
Van91I	CCANNNNNTGG	1 cut(s)	209
VneI	GTGCAC	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	17
XapI	RAATTY	2 cut(s)	446, 467
XcmI	CCANNNNNNNNNTGG	2 cut(s)	206, 498
XmnI	GAANNNNTTC	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.